Array 1 413-183 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNB01000101.1 Verrucosispora sonchi strain CGMCC 4.7312 sequence101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================== ================== 412 27 100.0 41 ........................... TACACGTCCTGCATGACGGCGAGGAGGCCGGCGCCGGCGTC 344 27 100.0 42 ........................... ATGTCGTCCCCGGTGGGCATCAGCCCGGCGGCCTGCAAGGTC 275 27 100.0 39 ........................... GCCAGCGCCCACACCGTCTGCGGGCAGTCGTCGGGCGTT 209 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ========================================== ================== 4 27 100.0 41 CTCATCGCCCCTACCAGGGATCGCAAC # Left flank : CGACACGCCGGGGTAGATTGCACTACCGGAGGTTCGCTGCAAATTGAGTACGCGACTGGCCAGTCAGAGGGCCCGTGACCAGGGACTTAAGGCTGGGGT # Right flank : CCCGCAGTCGTCGCCGGTGCTGCCTTCCGGCCCGCAGGTCCTCATCGCCCCTACCAACCTCCCCCGTTCAGAGGGCAAATTGATTCATCGAGGGCGATAGAGGAAAGGTGCACCTGACCTGCAAGGATGTGAGTGTCGAAGTCATATCCACAGCAGAGTTGGGTGCACCTTCCTGGTGAGCAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATCGCCCCTACCAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.50,-4.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 31612-32040 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNB01000039.1 Verrucosispora sonchi strain CGMCC 4.7312 sequence039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 31612 29 93.3 36 ..G...-....................... GAGCGCCCATCCCACGTCCAGGCGGTGACGCTGCCA 31677 30 96.7 37 .....................A........ AGGACGGCTTCTCGTGCGGCCTGTGGGTGGTCGCCGC 31744 30 93.3 37 ......C.................A..... TCGACGCCGACCGAACCAACGGCGACGAGGGCGACAT 31811 30 100.0 35 .............................. CACCTCCCACCGGCCGGACCCGTCCATGTGCTGCT AGT [31826] 31879 30 100.0 35 .............................. CGCGACCCCAACCGGACCGCCGTCCGGACCTACCT 31944 30 100.0 37 .............................. ACGGCATGGCGGAGATCGGCAAGCCGTACGTGTGGGG 32011 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 GTTGCGATCCCTGGTAGGGGCGATGAGGAC # Left flank : GGTAGCGCACTTGACTGGGGGTCAAGGGGTCGTCGGTTCGAATCCGGCCGTCCCGACCAGAAGTTGCAGGTCAGAGCCGGTTTCCTGGAGATCAGGGGACCGGCTCTTGATCGTTTGTTGCTCATTTGTTGCTCGTCCTGAGCCTCAGTTGCTGACACGTACCGGCACGGCGGATACCCAGGCGGATCAACCGATCTAGGTTGGCCGGGCGTGCTGCGGCCGATCGTGTTCAAACGGGTCTGGCGCAAGGAGCCACGAGGCTGGGTGGTCCTCGTGTCTGGCCGGCAGCGCGGTCGAGCGCTGCGTGTGCTGCGGCCGTGCCGGAATCGCCGCGCAAGGAGCAGGTTGGCCTCCCCTCGAGGATGCACCGGTGCCCGAAGCCGGTTCGTCACGTACACCAAGCGGGCTACCGGCGAAAAGACGCCGAGATCGAGAGCTCTGGCCAGAGCTGCAACACCCTTGAGACCCGGAGCCGACGCAGGTTTGCCTGCTGAGTGGTC # Right flank : CCCCAGCCTTAAGTCCCTGGTCACGGGCCCTCTGACTGGCCAGTCGCGTACTCAATTTGCAGCGAACCTCCGGTAGTGCAATCTACCCCGGCGTGTCGCCGCAACCGCCAAGATCACAAAATGTCCGAGGGCGCAGGTTGAGACCGCCCCCACTCCTGCCGCTGGCCGTTCGTGCCGGGCGGGAACGTGTAAACAAGCATCCTGCCGTACGAGGCGTCGATCAACTTGCCAACGGCAGGCGTACCGAGCGGCCGAGTTGCATGTCGCGCTTCGACCATCTGTATTCAGCAGGCTGACCGCAATCTTTATCAACCGAGGCCAAGCCGTATTGGTTCTAGACCGCGCGACCCTTGGGATAGCCCTGTCTTGGCGGCGTCGGGGGAGGTGCGGCGGTGCGTTGGACTGCTGGCAGAGAACGGGAGGCCTCCGTGATTGCGCGGAGGCTTTCTGCGGCTTGTCGAGCTGCCTGAGCCTGATGAATTCTCTTCTGGGCATCGCGA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTGGTAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.50,-4.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //