Array 1 129-1809 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKO01000116.1 Campylobacter fetus subsp. testudinum strain wqj6 contig00121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 129 29 100.0 37 ............................. CAACAAGCAACTGGAAACGAGAAAAAAGAGCAAAAAG 195 29 100.0 38 ............................. CAACTTGATCCGCAGATCTCTCTATATGAGTTCTTTGG 262 29 100.0 37 ............................. TCATTTATTAGTTTTTTCTCTAAAGCCACCAGAGCGT 328 29 100.0 37 ............................. TTGCTCTATAAGACCATTTTGTATAAAATGGTGGTGC 394 29 100.0 38 ............................. TACAAATATTTTTGAAAGCAAATACTTTGTCAAAATTT 461 29 100.0 37 ............................. TTAAAAATTGCCGTTTGCATTTTCTTTAAAGAAATGC 527 29 100.0 38 ............................. TCTCTGTGTAGAATTAGAAACAATATTTGCAAATTCAA 594 29 100.0 37 ............................. TTTGCTATTTGCAAATTTTGCAGGGACGGCTTTACCA 660 29 100.0 37 ............................. TTTATAAATAGCCTGTTCTATTTCACTTATCTCTTCC 726 29 100.0 38 ............................. CTTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 793 29 100.0 37 ............................. CGTTTTTTCCTTTAAAATATCGTGAGCTTCCTCTTCC 859 29 100.0 37 ............................. CTCGCCTATGAACAGAGCTAGTCCGTTTTCATTTATT 925 29 100.0 37 ............................. CTTGTAGATCCATATTGTTATTTCTACTTTACATTTT 991 29 100.0 37 ............................. CATGAAATAGTAGTATTTTTTAACAATGAACAGTAAA 1057 29 100.0 37 ............................. CACTTTAGTATTTAAATAAGCCGTATTAAAAGCGTTT 1123 29 100.0 36 ............................. CAAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 1188 29 100.0 36 ............................. CAAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 1253 29 100.0 37 ............................. CATGAAATTTCCGTTGATATAAAAAATAAGTTTAATG 1319 29 82.8 5 ..................A..ATA.C... TTTAA Deletion [1353] 1353 29 100.0 36 ............................. CATGATACAAAGCGTGGTTGGTAGATATTATATTTC 1418 29 100.0 36 ............................. CAAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 1483 29 100.0 37 ............................. CACGAAATTTCCGTTGATATAAAAAATAAGTTTAATG 1549 29 82.8 5 ..................A..ATA.C... TTTAA Deletion [1583] 1583 29 96.6 37 ............T................ CACTTTAGTATTTAAATAAGCCGTATTAAAAGCGTTT 1649 29 100.0 37 ............................. CCAAAGCAGGTTTTAGTTCATCACGTTAAGCCTTCTA 1715 29 100.0 37 ............................. CTTGTCGGCATCACCGCAATGAACTATTGTATCTACA 1781 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 27 29 98.6 35 GTTTGCTAATGACAATATTTGTGTTGAAA # Left flank : ATAGCTATATTATATATAAAACAAATAATCCATTTTCAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATGG # Right flank : ACAAGTTCTTTTTTTAATGGCAATGAGATAGTGACTTGTTATAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAGCGCTTCAATATATGATAAAAAAGAGGTGATAAAATGGAAAATCGCAAACTTATTATAGGGTATTATGGAATAGAATGGGATATAAAAGTTCCTGGCTATGATGAGGATAAAGCAGATGTATTAAAAATCATCAAACCTATAACGTCTGTAATGGACGGCAAAATAGTTGAAATATTTGATATCCTTACTCCACACAAAGAGGATATAGATGATGCAAAAGAGTATAAAGAATTCTATGAGATCTGCGATTTTGAAGTACCACAAACTAATCATAAATTCACAGGTACTTTTATAGACGCTTTAGAATATATAAAAGATACCTTTAATCAAGTTTCAAAGACTGTTTAACATTTGACGGCGACAGGCTAATAACAGCTTTTAAGCCGACGCAAGGATATATCAAGATATTTCAAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1984-373 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKO01000106.1 Campylobacter fetus subsp. testudinum strain wqj6 contig00111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1983 30 100.0 35 .............................. TCGGACTTTTTAAATATTTTAAACAAAATGACTGA 1918 30 100.0 35 .............................. AAGAAATGCTCAAATAACTTGTACATTTCTTTTAA 1853 30 100.0 35 .............................. ATAGAAAGATAAACTTTTGTAGGAGATACAAAATA 1788 30 93.3 36 ...............G.............T AGGATAAAAAGCTATACAAGCAAAGCAAGACAACTT 1722 30 100.0 36 .............................. TCTGTTATTTTATACTCTACCCCCGAGTAAAGAAAT 1656 30 100.0 36 .............................. CTAAAATTAAATTTAACGGCTCTTGTTTTTAGTGGC 1590 30 100.0 38 .............................. AACTCAAATTTGGAACACAGATAGACCGGAGTAAAAAA 1522 30 100.0 36 .............................. TTTTTCAAGGCGATGAAACTAGCCAAAACCGCATAG 1456 30 100.0 36 .............................. GGGATAAAAGGCAAATTTATGCTTAGTTACAACAAT 1390 30 100.0 38 .............................. AACTCAAATTTGGAACACAGATAGACCGGAGTAAAAAA 1322 30 100.0 36 .............................. TTTTTCTAAAAAGGAAAACGTGCAATGCGCAACAAC 1256 30 100.0 36 .............................. TAGGCCTATATTTCGTAAATTTATAAAAGATATGGT 1190 30 100.0 36 .............................. TTTATAGCTTGTCTTTCTGCCTCGCCGCTACTTTTC 1124 30 100.0 36 .............................. TTTAATTTGCTTAAGAACATATTTACCGTATTATTT 1058 30 100.0 35 .............................. CAAAAATACTCTTTGCACTCCTCTTTACTAAGCCC 993 30 100.0 36 .............................. CTGGAAAACTCCTCCGTCTTAAGCTTTACTTGTGCT 927 30 100.0 37 .............................. ATCTTTACAAGCACGTCTCCCTCATATATTCTAATCC 860 30 100.0 35 .............................. AAAGGAGCAAGGGCTTGGAAATGGTTTAGCAATCT 795 30 100.0 35 .............................. GAATATAAAAGAATTGCTGAGTTTTTTTATAGGGC 730 30 100.0 35 .............................. TGATATTCAGTGACGTTCTAAGCGTTGTTGATACT 665 30 100.0 35 .............................. ATAGCATTGTGATAGTGTTTCCTACGTTTAAAGGC 600 30 96.7 36 ...............G.............. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 534 30 100.0 36 .............................. TCAAATACCGCTTTGGATATATAGAAAAATTAACTT 468 30 100.0 37 .............................. CTAAGACTTACACCTGTTTTTGATACATTAGAAAACA 401 29 73.3 0 ..........C....AGC.C..-..A...T | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 98.5 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TTTCCTTTTTTTATTCTGTT # Right flank : TCACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAGAGTATAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGCGTTGAGAGAGTTTGGAAAAAGAGCAATGCACATATTTATGAAAAGCACGACACCGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 867-1880 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKO01000129.1 Campylobacter fetus subsp. testudinum strain wqj6 contig00134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 867 30 100.0 35 .............................. TCTGCTATGGGCAAAAATATAGAAGACAATTTGTT 932 30 96.7 35 A............................. ATACGATATCAACCGGCAAAACCAATCTATTTGTT 997 30 96.7 35 A............................. GAAATTTTATAATCGTCAAAAATAATAGGATCAGA 1062 30 100.0 36 .............................. TTTAATGGTATTTCTTGCCATTTTTGGAAAATAAAA 1128 30 100.0 36 .............................. TTCTATTTCCTTTTTCAATAATCTTGTTTTGATATC 1194 30 100.0 36 .............................. GGTAGAAACAAAGCTACCTTATTACGTTGGATTTTA 1260 30 100.0 37 .............................. GCTTTAGGGTAAAAATAATTTTATCTTCATTTGCTAT 1327 30 100.0 35 .............................. GGAGTTTTTAAAAGAGGGTGAGCGCATACCAAAAA 1392 30 100.0 36 .............................. AGAAGAAAAGTTTATTAAATACAAAAGTATATCCTA 1458 30 100.0 35 .............................. TCATTACCTTATGTGAAAGGTATGGCTGGGATAAA 1523 30 100.0 36 .............................. GCCATTTCATTCTCGTTTATAGAAGGCTTAACGTGA 1589 30 100.0 35 .............................. AAGCCTAATTTAGGCTTTTATAAATGCTCTGACAT 1654 30 100.0 36 .............................. TTAGGGTAAAAATAATTTTATCTCTCCATTTGCTAA 1720 30 100.0 35 .............................. AGTTAGAGATGAAGAGGTAATAGCGACTTTTAGAA 1785 30 100.0 36 .............................. TTTAAGTCTAAACAAACAACTAAATTTACAACAACG 1851 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.6 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTACACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAGTGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAGCTTTTCATAGTTTATCCTTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCATTCGACAA # Right flank : AGTACCAACTGACCTAGCTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 229-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKO01000226.1 Campylobacter fetus subsp. testudinum strain wqj6 contig00233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 228 29 100.0 36 ............................. GAAGCAGTAGCCAAAGACGCCTCTAAAAATGTTTTG 163 29 100.0 36 ............................. GAAATATAATATCTACCAACCACGCTTTGTATCATG 98 29 100.0 5 ............................. TTAAA Deletion [65] 64 29 82.8 0 ...G.TAT..T.................. | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 95.7 26 TTTCAACACAAATATTGTCATTAGCAAAC # Left flank : | # Right flank : CCATTAAACTTATTTTTTATATCAACGGAAATTTCA # Questionable array : NO Score: 4.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.14, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 388-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKO01000170.1 Campylobacter fetus subsp. testudinum strain wqj6 contig00178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 387 30 100.0 35 .............................. ATTTTATCGATATTCCGGCTAATAAATATAAAGAT 322 30 100.0 35 .............................. AAGCGTAGCACCAAAAGAAGCGTATGAAAGCATAG 257 30 100.0 36 .............................. TAACTAGTGGCAAATGGGCTAAGAGTTTTTATAAGT 191 30 96.7 35 .........................A.... TCTATCATTTTAAATTTCCTTTTTTTATTCTGTTT 126 30 100.0 35 .............................. TCGGACTTTTTAAATATTTTAAACAAAATGACTGA 61 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 35 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : CTAGTTAGTTTCAACACAAATAATCCATTTTCAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTCAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTAT # Right flank : CAAGAAATGCTCAAATAACTTGTTAATTTCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //