Array 1 10972-7951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMM010000010.1 Bifidobacterium sp. MSK.13.1 NODE_10_length_90208_cov_341.283, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 10971 29 100.0 32 ............................. ACAGCGACTTACGAAGTAACTGCCACCCGTGG 10910 29 100.0 32 ............................. GATCGTTCGCACAACCATCGTCACCATGCTTC 10849 29 100.0 32 ............................. GGACGCCCGTGACATGCTGCGCCAGATTCGCG 10788 29 100.0 32 ............................. GGACGGATTTCCCGATGCATATCCATGCCACG 10727 29 100.0 32 ............................. CACTGGGGTATCTACGGCGTGTCGCCGTTCAC 10666 29 100.0 32 ............................. CGATACAGACTACGCCGAAACGTTGAAACAAC 10605 29 100.0 32 ............................. TGCAGGATACGCGTCGCGTCACCTGCGTCTCC 10544 29 100.0 32 ............................. AATTCAATTTACGCAAAAGATACCGGAATCTA 10483 29 100.0 32 ............................. AATCAGATCGTTTGGCCGGGACAATATTGTCA 10422 29 100.0 32 ............................. ACTTCGTAACGTCCGCGACTCATGTAGGACGG 10361 29 100.0 32 ............................. TACGGGGAGTGTCAAAATCGTAGTCGTTCGTG 10300 29 100.0 32 ............................. GAAGCGCTTGCGCTCGGCCTTCGCCCTTGCGC 10239 29 96.6 32 ............................T CCATAGTCGGCGAGGCGCTGCTTCCCGTGCTG 10178 29 96.6 32 ............................T CCGCGTTCGCGACGACGAAATAGCGTCCGTAT 10117 29 100.0 32 ............................. TGTACGTACGTAGCTCGACATGCCCCGAAGAG 10056 29 100.0 32 ............................. TGTTACATTGGCGGCACGGCGACACCGGCTGT 9995 29 100.0 32 ............................. GCCCAAGTGCAGCAGACTCAAACCGTACCCCC 9934 29 100.0 32 ............................. ACCGATATCTTGACGCTCTCGCGCCCCACATC 9873 29 100.0 32 ............................. CGGCGATGTGCCGCTCTCCCCATGACGGGACG 9812 29 100.0 32 ............................. CCTTCAACACGACCAACTCCACCAGCTCATTA 9751 29 100.0 32 ............................. GTCAAGTTCACCGGCAGTGGACAGCAGAACTA 9690 29 100.0 32 ............................. TTACATTGCATGCCGAAACCAGCGTCTGCTGG 9629 29 100.0 32 ............................. GAACGGAGTTCGGCCGGCACGGCGATGCCGAT 9568 29 100.0 32 ............................. CGTTTCCGCAGCGTTGTCTGTGCCGGTTGTCG 9507 29 100.0 33 ............................. GACAAGGTGGTCTACATGTTCGCCACCAAGCTG 9445 29 100.0 32 ............................. CCATGGGCTCAAGCTGCCGGTCGACTACGAGT 9384 29 100.0 32 ............................. TTGACGCCGACTTCGTGGCGGACGTCACGGAC 9323 29 100.0 32 ............................. AGGACAGAAAACACAACAAAGCGACAACGCCG 9262 29 100.0 32 ............................. TGGAGACACTATTGCAGAAGCGGTAGCCGAAG 9201 29 100.0 32 ............................. TGCTTAACATTTTGCGCGAGTACGATCAGCGC 9140 29 100.0 32 ............................. CTTTTCACCTTTTTTGACCCCAACGTCGGCGG 9079 29 100.0 33 ............................. CGCCGTGGAATCCTATTTGCAGTGGGCTCTGGA 9017 29 100.0 34 ............................. GGGGGGGGGGGTAAGGGATTCCTGGGACAGGAAG 8954 29 100.0 32 ............................. GTGGTCACGATCTGGTCAACGCATGGAAGGTT 8893 29 100.0 31 ............................. CCCTGGAGCGTCGGAACTTCCACCCTCGCAC 8833 29 100.0 32 ............................. TGGGAGGTGGCACCCTCAAGCATGTACTTGAT 8772 29 100.0 32 ............................. ACACGTTTTAAACTGTGCAACGTCCCGTGGGA 8711 29 96.6 32 ............................A CCTCAAGCACCTGCCCAACGACCTCAAAATCA 8650 29 100.0 33 ............................. GTGCCTATCAGTTTCGCCCGTTCCAATATGGTG 8588 29 100.0 32 ............................. GTCACCAAGATCGACAAGAAGATCAAGAGCGT 8527 29 100.0 32 ............................. TCGCCGCTCACGTCGCGGTCGTTGTCGCTCTT 8466 29 100.0 32 ............................. ATCAGTCGGGGGGTTATCTTCGGGTTTTCTAT 8405 29 100.0 32 ............................. CGGAGCCGGAGCAGGAGCCGGAGTGCCGGAAG 8344 29 100.0 32 ............................. GCGGGTAGTTGCAAGCATCAGTGTAATCAGGC 8283 29 100.0 32 ............................. GGCATGCCGATGAGCCACCATGCGATCCAGCA 8222 29 100.0 32 ............................. AAGGATACGCTGCCCATGATCGTCGGCACGAA 8161 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 7979 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 48 29 99.5 35 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : AATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGCGTCAAAAACACCCCCCCCCTTAAGTGGCTTTTCTCGAAAGGCATGTGCTATATGTAAGCGAGAAACCTCCGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCACGGTTCAGCTCAGATGAACTGGGTGTATGTCCATGCATTTCGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //