Array 1 135082-133812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJL010000001.1 Pseudanabaena yagii GIHE-NHR1 1013Pa_1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================================================================================================================================================================== ================== 135081 35 100.0 39 ................................... ATAGATTGTTAATCAGATAATAGGCTATTTTAATGTACT 135007 35 100.0 40 ................................... CTAAATGCGCTGCTCCCGCGAAACATGTGTTGTTCAAGTT 134932 35 100.0 44 ................................... ATAGGAATAGAGCAATTCTTTGTCTTTTAGTCATAATCAATGGT 134853 35 100.0 39 ................................... CTATTAATCGGTACTTCGTAGGAATCGCCAGAGCAAATG 134780 35 100.0 40 ................................... AAACGTTTCCAAAACAGTGCCGAAAATTGGTTTCACAATA 134704 35 100.0 36 ................................... GTATCTTTCATAATCGCGACCTAGACGGCGTGTTGC 134632 35 100.0 39 ................................... ATGTATGGCAGATTGTTTTGGTATACACCTGCAATCTCG 134558 35 97.1 40 A.................................. AGAAGAAACTAAAATCTCAGAAACTATTGACCACAAACAC 134482 35 97.1 45 ....T.............................. AGCTGATTGTTAAGCTGTTGAGCTGTTTGCAGATCAACGTTCAAC 134402 35 100.0 41 ................................... ATAACAAGCTTATGTGGTAAACATTGCTTAGCTACTACAAC 134324 35 97.1 42 .........T......................... AAAGTAATTTATCTTTTGATAAATTACCGAAGCCTATTCTCC 134246 35 94.3 141 ..........A.................T...... GCGAGAGAAAGATCGAAGAATGAAGATCGAAGGTCGAAGAAGTAAAAACAAAGAACAAAAAAACAAGAAATTTATGTGATCATATAAGGTCGGATTTTTGAGATAATCCCATTCCGCCTTCAATCTTCCGTCTTCCCTCTT 134070 35 88.6 187 ACC...............................T GGGAAGGAAAGATCGAAAAATGAAGATCGAAGGTCGAAGAAGTAAAAACAAAGAACAAAAAAATAAGGAATTTATGTGATCATGTAAGGTCAGATTTTTGAGATAATCCCATTCCGCCTTCAATCTTCCGTCTTCTGCCTTTAAAATAAATTCTTCATTCCGCCTTCAATCTTCCGTCTTCCCTCTT T [134064] 133847 35 88.6 0 ACC.....T.......................... | T [133842] ========== ====== ====== ====== =================================== =========================================================================================================================================================================================== ================== 14 35 97.3 60 GTTTCATAACCATTTCCCCGCAAGGGGACGGAAAC # Left flank : GCTAAGAAACGTGCTTATGAACGTAATGGGGTGAAAGAATATATTGTTTGGCGGACGTTAGAGCAAGCGATCGATTGGTTTGTTTTAGAAAATGGTCAATATGTGGAGTTAGCGCCCGATGCTTCAGGAATTATTCATAGTTGCGAGTTTGCTGGCTTACGGTTGAATGTAAGTGCAATTTTAAATGGTGATATGGCAACGGTACTGCGCGGAGAGCGATCGGGGCTTTAGCGAGAGGTTTGTAAATGTTTACATTACTTTAGGTTGACTTTTTATTTTTTAGCCTTTAGTCTATTTTGTATCGTCAAATCGACCCATCCTTCTCGAACCTTGAAAACCGCATAATTTCGTTTACTTGTGTCGATGCTTTACCCAGTAAGGTTTGCAAGATGTCCGTTTTCTTGAAAACCTGTCAATAAGGTGTTCTTATTGAGACTAAAATGAGGTGTGTCGATTGACCCCTTTGAAAAGGTTGCTAGGTATGGCTTAGAATTTACAGA # Right flank : GAGAGGGAAAGATCGAAGATTGAAGGTCGAAGAAGGAAGATCGAAGAAAGAAAAATAAAAGAATAAAGAATAAAAAATTCTGTAATTACTGATATTACGTGGAAGGAATTCCTGCGATGTTGAAGTATCGGGGCTGGCACGGAGGCACTGGAATTTAGACTAAGTTGATTAAGAGAATCAGAAAAAGAGCAGGAAAAAGTGACCCAGAAAACGGAGAACTGAGAAAAAGCAAGAGAGAGAAAAAGAGAATATTGAAAGTTAGGAATTAAGGTAGTCTTGATTGACCTTTTTCGAGCGAGAAGCTCGTTTTTTGACGACAGGAAAGCGAGAAAAAGGAGAACGCTTGCGTCCAGATTTCCAACCGAGAGACTTACCACGAGGTTGGGGAGAACAAGCAGGAGAGCCAATCCTGACCAAAAGTGCGGCAAAGCCCTGAGCGACTCGACCAAAATTAAGATTGGTTTGAGGTTTCTGCCAAGGCAAAGGAGTATCAATAACCA # Questionable array : NO Score: 4.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.92, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATAACCATTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 13668-16991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJL010000006.1 Pseudanabaena yagii GIHE-NHR1 1013Pa_6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 13668 37 100.0 37 ..................................... TCCACTGCCTTGACGATAGAATTGCACCCATCCTAGC 13742 37 100.0 37 ..................................... TTGACATCCCATGAACTTGAATCCTAGATAATATCTA 13816 37 100.0 34 ..................................... GACATCCCGTGGTATAATCCTAGATATTATCTAG 13887 37 100.0 35 ..................................... ATGCTTACGGGATTAGCATCCTCATAGGGATTTAC 13959 37 100.0 42 ..................................... ATGAACAAAGAACGATTGGCTGATATGCCTGAGGCGCGAAAA 14038 37 100.0 35 ..................................... GATGGAATTTAGAAGCTCCTAACTTACCCTCTTAT 14110 37 100.0 35 ..................................... TCTCAGAACTTTGAATAAAGGATAGAAGAGAGGCT 14182 37 100.0 34 ..................................... CCGTTGCCGCTATTCAAGCCGTAGTCTAGCCCGT 14253 37 100.0 37 ..................................... GAAGCGACAATTCCAGCACCTATAGCTGTTGTAGCTG 14327 37 100.0 36 ..................................... TAATAGAATCTCATCCCTAATTCTATTATTACTTTC 14400 37 100.0 40 ..................................... GCAAAATTCTAGATGATATTCTGCAACCTCCTTATAAGAA 14477 37 100.0 36 ..................................... GTAAATGGCGCAAAAGACGCTATAGAATCGACAATA 14550 37 100.0 34 ..................................... AAAGGATTCATACAGACTCTTTTCTGCTCTCTCA 14621 37 100.0 35 ..................................... ATTGCCCAAAACTGCGCCAAGCGCTCTCAAGAAGC 14693 37 100.0 35 ..................................... TTGCCAAATTACCAAGTAAGTGCTAGCCTAGGATG 14765 37 100.0 34 ..................................... TTCGATTGCTTGAGACACATTCGAGAGAATCTCA 14836 37 100.0 36 ..................................... GTGCGCCCTCTGTTTCTTCTCTTTATATCTTCTTCT 14909 37 100.0 40 ..................................... AATCCGTATGAAGGCGTTAACAATGCAGCCGCCATTTTTA 14986 37 100.0 34 ..................................... CGCAACATCTGCTTTCTTTTTTGATAGGCGAATC 15057 37 100.0 36 ..................................... TTTACCTCCGACGGATTCCAACTTTCTTACGATACC 15130 37 100.0 34 ..................................... CTTCTTTCGGAGCTTTGAATGAAGGATAGAAGGG 15201 37 100.0 35 ..................................... ATAAACCCATTCATTTTGAGGGATACCTTTTAGAG 15273 37 100.0 42 ..................................... GATAGCGATCGCGCCTATCAAGTGGCTTAACCTTTATCGGCT 15352 37 100.0 35 ..................................... TTTTTCATCTTCAATTTTGTAGCCAAAACATTTAA 15424 37 100.0 36 ..................................... TATGCCTATATCACAGGTACTTTTTTGGTAGACACT 15497 37 100.0 34 ..................................... CCCTCATCAACTTCCTCATCACCTAGATACCAAC 15568 37 100.0 36 ..................................... GCTTAACCTTTATCGGCTTACGGGGAGTTAGCCGCC 15641 37 100.0 35 ..................................... CAAGGTGCAAACAATTACTTTCTGGACAGTGCCAC 15713 37 100.0 35 ..................................... AAATCGACAATTTTGTGAAGTGCTAGAAGACTTGA 15785 37 100.0 35 ..................................... AATTTGCTGATTTCCGCAGTCATCGTCTAGACCAT 15857 37 100.0 35 ..................................... GAAGCATTAGTAAGTGCACCACCTGCAACTGCGAA 15929 37 100.0 35 ..................................... GGAATCGCCAGTATAAAGCTGACCGCCCTTCCCTA 16001 37 100.0 33 ..................................... TTAGCAGATTCTCATCAGTAAATCTACAGTTAG 16071 37 100.0 36 ..................................... ACACTCACGCCTTGCGGTGCTTGGGTGAAGGTTATC 16144 37 100.0 41 ..................................... ACACGCAACGCTATGGTCTAGAAGTCCCTATCCTTTCACCT 16222 37 100.0 37 ..................................... ATGGCTAATCGCCCAATTCCCAGAGCCGAGCGATTGC 16296 37 100.0 35 ..................................... GGAACTGCTACAGGCTGCGGCTCAGGATTCATAGC 16368 37 100.0 35 ..................................... ATTTATATCTAGATGAATCCATAATTAGCTACCTC 16440 37 100.0 35 ..................................... GCAGTATCAGACTGCATAACAGTCACGACTAAAGA 16512 37 100.0 39 ..................................... CATGCAAAATATTGAGGAATTCTGCCATGACTAATTGAG 16588 37 100.0 35 ..................................... AGTTGTACATAATTTTCAGCCCCTATAACATTAAT 16660 37 100.0 40 ..................................... AGCATTTAAGAGTTTATAAGTGGCTACTACTGGATTAGAG 16737 37 100.0 34 ..................................... TGAAAGCATTATAAGAAGCATCATATGAGCTACT 16808 37 100.0 39 ..................................... ATTTAGGTAGCGCCGCCGAAGGTATTCAAGATGCTCAAA 16884 37 100.0 34 ..................................... AAGACTAGGATCTGCAAGCATTGCGATAGAGGGA 16955 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 46 37 100.0 36 GCTTCAAAGCCTCTGAAACCCTTTTAGGGATTGAAAC # Left flank : CGTACTAAAATCCATAAGATCCTCAAATCTTACGGTCAATGGATGCAGTTTAGTGTGTTTGAGTGTGAGCTTACTGATGCTCAATATGCGAAGTTGCGATCACGTTTGAGTAAGTTGATTAAACCGAGTGAAGATAGTATTCGCTTTTACTTCCTTTGTGCTTGCTGTCAGCCTAAAATAGAGCGTATTGGCGGCGAACAGGTGCGCGACGACACAATCTTTTTCGCTTAATTTTTAGTTCACAGGTTGCGCGAGTCGTTGGGTGTTTTTGAGGACTGTATGCAATTGTTGGTAATCAATGTGTTAACTGGTATGGCTTTAGATGCGATCAGGCGATTTGTTCGGTTCGCGCAAGTCCTGAATGCACTGATATATCTATGTTTTCAATGTTTATTACAAGATCTAGATTCGCTCCAAACTGTCCAAATCTGCTACAATTGCGATCGTTCGCGCAAATGTACCTTGAAAATCAAATATAATATATTTTTCAAGCGCGGGCA # Right flank : CTCTTAATCTAGATGCTTCTATAGAACCCATTTGGTATCCTAGGAAGCCTTAGCGAGACGCTTAAGCATAAGCCTGATAAAGCAAAGATGGATTCTGGCATTAGCATTGTCTAAAGTTCTGTCAAAGTTTTTGACCAGACTTTTACAACGATCCATCCAAGCATTGGAACGTTCGACAATCCAACGCATCGGAATGACCACAAAACCAGATATGCCCAGTTCCGCCTTTTCCTGTCTAGACATTTTCGGTGCAACCTTAAACCGAATCTTGGACATAATTTGCGGGTAAATCGCTTCTAAAGCAGGGATTAACTTGTCAGGGTGATAGCCATGATCAACCATGACAGTGATCTTGGGTATATTCACAGGCTTAGCTTTAAAGTAGTCAATATTTTGAGCAAACATTTCAATCAAAGCCTTATCATCGGACAGACTTGCCTTGGTGCAAAGGGTGAAGAATGGCAAACCGAGAGCATCCACTCCGAGATTTTTCTTGATCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAAGCCTCTGAAACCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 17936-25462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJL010000006.1 Pseudanabaena yagii GIHE-NHR1 1013Pa_6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 17936 37 100.0 36 ..................................... AGGAAAAAGGAAGATGTAGCGCCTATAAACTCCGAA 18009 37 100.0 35 ..................................... TTTGCAGTTATTTCAAGGTATTCTGCAAGTTTGCA 18081 37 100.0 36 ..................................... ATGTTAAAAAGCCCCTCAGTGAGTACTCTGTAGTAG 18154 37 100.0 35 ..................................... CTATACCTATCTATCGATTCTATTCATGTTCACAA 18226 37 100.0 37 ..................................... ACATTTGGTATAGGTTTTTGATTAGGACTACTAACAG 18300 37 100.0 40 ..................................... ATAGCGACCCATCCTGTAGGAAACCACCAAGCCCCCCAAG 18377 37 100.0 36 ..................................... AACAATTAAGGTGTTAACAGCATCTACCAGTTTTTG 18450 37 100.0 36 ..................................... GTTTCTTCACCTTCCAAGAAAAATCCTTATACTATT 18523 37 100.0 34 ..................................... GTTATGACCCCTAGTGGATATCGGATCGAACTAG 18594 37 100.0 35 ..................................... CCAACCGTGCCATTCTACTGACCTGATCCTTGAGA 18666 37 100.0 36 ..................................... AGATTTGGGAACCAGACAACCTACGCGATGATTGAT 18739 37 100.0 35 ..................................... AGACGAGTTAATACATACAATCCAGACAAAGGGAA 18811 37 100.0 35 ..................................... CCTTTCAGTTGATTTTGGATTTTGACGCGATCGGC 18883 37 100.0 35 ..................................... TTCATCAGCAACGAAAGCGACTAAGGGAGTAGAAG 18955 37 100.0 34 ..................................... CTCAAATGGATTACTTGCGAACTTATTTAATGAA 19026 37 100.0 34 ..................................... TCAACCTGCCTAATGCGGTTCCCTCGATCCATAA 19097 37 100.0 39 ..................................... CCAAGTGCAGTAGGGGAAAGAATCTAGAGTACGTTGCAC 19173 37 100.0 35 ..................................... GACAATCCATTGCTTTTTATTTCAGTACCTATCAA 19245 37 100.0 37 ..................................... ATTTGCCCCTTCCTACGGTTGCCAATGCTACGCTTAA 19319 37 100.0 35 ..................................... AACCACAGTTTTAAACAATAAGGCTAGCTCAGGTC 19391 37 100.0 36 ..................................... ATGCTTAATTCTTGCTTAATCTACCTAGTTAAACCT 19464 37 100.0 38 ..................................... CAGGCAATACTTCACTAGAAGCCTGTGCAAGTTCAATG 19539 37 100.0 36 ..................................... GATGTTTCTACACCAGAGGGGACACCAATCTATGCG 19612 37 100.0 33 ..................................... TCATTTAGAAAGTGTGAGCAGAAAGTATGTCTA 19682 37 100.0 35 ..................................... TTGAAAAGGGTAACATCACAAGCAAAGCGTCCGAT 19754 37 100.0 34 ..................................... GCAGTATTCGTATTGAAGCTAAAGGCGGCTCGCT 19825 37 100.0 37 ..................................... CAATGGCACAATCGGTCGCACTTCTAAGCGGAGTGAA 19899 37 100.0 37 ..................................... AATAAAATTCAATTCTACCCTTGAAAGACTTGAAAGG 19973 37 100.0 39 ..................................... TCTAACGTAGAGGCGATCGCCGAAGTATTTACGCTTAAT 20049 37 100.0 35 ..................................... AAGCAATTACTTATGTTGGCTGAGGATCGCACAGC 20121 37 100.0 35 ..................................... GCAACGCATCAAAAGACTAGATTGGCACTTTGCGA 20193 37 100.0 35 ..................................... AGAGATTACATCTTCAGTCGGCAAGCTGAGTTCTG 20265 37 100.0 33 ..................................... ACATTTGATGATGAAGGCAACCCTGCCATTGAA 20335 37 100.0 33 ..................................... AGGGCAGATCTGCTCAGATTCTTCCCAGTTTTC 20405 37 100.0 33 ..................................... ATCCCAAATTTGCTGTAAGACTCGACTTCGAGG 20475 37 100.0 35 ..................................... AGGAATGGCAGATTTAACAATAGGCTTGGCAGGGG 20547 37 100.0 34 ..................................... TAGATACTGATGCGATCGCCATTAGGGATGGCAG 20618 37 100.0 35 ..................................... ATGAAGACAGGAATTAAATTTTGTGAAATCTTATC 20690 37 100.0 36 ..................................... AAAAATAGGATAGGCTCGCTTATTAAAGATTTGGGG 20763 37 100.0 35 ..................................... TTGCCTGTGAGCCATGCAACCTTAAAAAAGGAGTG 20835 37 100.0 35 ..................................... TGATTGGACCAACTATGTAGTTGATCCACGCGAAA 20907 37 100.0 37 ..................................... AGCAACCATTAGCGACACTACTCCAACCTCATCGGCT 20981 37 100.0 34 ..................................... CTGATTATTGGTTAGCAGGTACACGGTGTTTAGT 21052 37 100.0 35 ..................................... CCATTTTTACCCCAAACTGCCTTATGCAATCGGGT 21124 37 100.0 41 ..................................... GCTAAGTGGTATATGAACCTTGAGCTAGACGCGGATGCATG 21202 37 100.0 36 ..................................... AGGCGCGATCGCCCACAATTTCAATTCAAATGGAGA 21275 37 100.0 36 ..................................... GTTTTTGAAAGCACGGAATTTGCAGCCTTCATGGAT 21348 37 100.0 35 ..................................... TACATGGCAACTGGTACTAATTTCAAGCGATTCGT 21420 37 100.0 35 ..................................... CTGTTCAGTTACTATACGCAACACAAAGGGAAGCG 21492 37 100.0 35 ..................................... GAAGAGATTGCAAAAGTCTCTCATAGTCTTGGATG 21564 37 100.0 35 ..................................... AATTACAACGACTTCGCTAGACGAGACTAGGGCTT 21636 37 100.0 35 ..................................... AAAGGCAAAATTAAGATGCAGATCGAGAGCAGGGA 21708 37 100.0 35 ..................................... CTGCTTGATAGTTGTTAGCCTGTACCTATCAATAC 21780 37 100.0 35 ..................................... TTTAAACTCCTTTTTATCAAGGAACTGCTCAATAA 21852 37 100.0 38 ..................................... AATTACAGACTCAGCGTCTTCAATGTCCATTCCCATTT 21927 37 100.0 36 ..................................... GCCACTATAGTAGCCATCATTTGTTGGCTTGACGGA 22000 37 100.0 44 ..................................... TAATGAACTTTATACGCTCCTTCACAAGCATGATTGCTGTGCAA 22081 37 100.0 36 ..................................... CGAGTATTGTGAGTCATGGTGCTAAGCTTGGCAATC 22154 37 100.0 37 ..................................... ATACAAAGAATTGCTTAAATTGTTTAAAAAAGGTGAG 22228 37 100.0 35 ..................................... GAACTTGATTTTTTGAAAAAAGTGGAAGGACTCTT 22300 37 100.0 35 ..................................... CCCCGATCCAAGTGCATTAAAGGATTTGCGGCTTA 22372 37 100.0 34 ..................................... CAAATACACCCCAAGGGGGCGGCTATTGGTGAGA 22443 37 100.0 35 ..................................... AGTTCCCTAGCCGCAGGATTGCCACGATATCCCAA 22515 37 100.0 36 ..................................... AGTTTGTGCTTCTTACAAAGAAGTTGAATCCTAAGT 22588 37 100.0 35 ..................................... AACAATCTAACTGTTGACCAGCCTTGCACCATTGA 22660 37 100.0 46 ..................................... TACTATCACCTTAGCTTTAACCTTGCATAATGCTTTGATGCTCAGC 22743 37 100.0 34 ..................................... CTGTAAAGGATCAATCCTAATTAATGCGCTTAGA 22814 37 100.0 35 ..................................... CTAGAGGTTTCAGTGTTTCTCAGTTCTTAGCATCT 22886 37 100.0 35 ..................................... ATTGCTTTGTGGAACTGATTTCTAATGGCGCTCCT 22958 37 100.0 35 ..................................... TTTATAGCACAACTCCTTTCTATAAATACACAACA 23030 37 100.0 37 ..................................... GGAACTCCTTTAAGGATGATCGGCAAGGTTTCAGCAC 23104 37 100.0 40 ..................................... CCTCTTAATGCGTAGGCATGGCGCAAATCGTAGGCAACAA 23181 37 100.0 35 ..................................... AAAACCCTTATAGGGCAAGCATTTCAAGAATAAGA 23253 37 100.0 34 ..................................... TGAATAGCTGCTCTCACCTGCTAGGTGTACTAGT 23324 37 100.0 38 ..................................... CTTGGTTATCACTGAATCTCGTTCACAAGGTTTCTCTG 23399 37 100.0 35 ..................................... GTAACGCAGGAAAACTCAGTTGTAACGCAGGAAAA 23471 37 100.0 37 ..................................... GGCACACGCTGACTACTTAACCTCATTGGTTGCCCAA 23545 37 100.0 35 ..................................... TAGCACCTTTTCGGGGCTGATAATACCGATAGAAA 23617 37 100.0 35 ..................................... AAAAACTATTTCGGTTGAAAATCCCATGTATCCGC 23689 37 100.0 34 ..................................... ACAATCGAGTTGATCGCCTTGCCTATTCCATACC 23760 37 100.0 35 ..................................... TTTTCGTTGCCACAGTGCGGACAAAAAATCTTGGA 23832 37 100.0 35 ..................................... ACAGACACGCCTTGTGGCGCTTGCGAGAAAGTGAC 23904 37 100.0 34 ..................................... TAGAAGGAGTTGTTACCAATTCATCGCCAACATG 23975 37 100.0 36 ..................................... GCAACAACTCCGCAATTTTCAAGGCGATCGCATCAG 24048 37 100.0 35 ..................................... ATTGCAGTTTGCAGTAAGATAAACACCTTTTGACT 24120 37 100.0 41 ..................................... TTGAAAGCTAAGATCATTGAGAGGTTTGTAGGGTTCAAATG 24198 37 100.0 34 ..................................... ACGATTGACATTTTCTGGCTTGCTCTCTGCATCA 24269 37 100.0 48 ..................................... ATAAGGTGATTTAGATATTGGTGGATAAAACGAGGAAGGCGATCGCTA 24354 37 100.0 36 ..................................... ATAAGGTGATATCGCCGAAGGCTGATAAATAATTCT 24427 37 100.0 40 ..................................... TCTTTATTCCTGATGGTGTTTGGATGTATGAGCCATTCAA 24504 37 100.0 41 ..................................... ACGAAAACTAACAAAATTTATCCAAAAATTATATGACTGCA 24582 37 100.0 36 ..................................... CGAGCTTAAGGAAATTGCATCGGTAATTCTTAAGCA 24655 37 100.0 38 ..................................... AACGGGTTGATCGGGCTTGAATTGTGTGCCTGCTCCAA 24730 37 100.0 36 ..................................... ATCCCAAATTTGCTGTAAGACTCGACTTCGAGGGAG 24803 37 100.0 35 ..................................... CTAGGGGTAATACTTTAAAAAGGAGCTTTGATTGA 24875 37 100.0 34 ..................................... GCTACTTGTCGCTCTTGGCAAGGTAAATGGTGGA 24946 37 100.0 36 ..................................... TTGCGAGACTTTCAAGACGGAACTTTACAGACTTTT 25019 37 100.0 36 ..................................... TTTATGGCATCCAAACTATAAAGACACTGTAACAGC 25092 37 100.0 6 ..................................... TTCCAA Deletion [25135] 25135 37 75.7 36 ATAC......TA.AAC..................... GCAGAAAGAGCCGCCGCAGTGTAATCACGTAGCTGA G [25138] 25209 37 100.0 35 ..................................... GACGGAAAGATCGGTGAAGAGTATCTATTTAATCT 25281 37 100.0 35 ..................................... TATAGGGATATACAGGAGCTAATAAAAGCTCATTT 25353 37 100.0 34 ..................................... TGCCATTCGCACATATACCCGCTCTCGGATAAGC 25424 37 81.1 0 ........................A..AC...C.TGA | C,C [25448,25455] ========== ====== ====== ====== ===================================== ================================================ ================== 104 37 99.6 36 GCTTCAAAGCCTCTGAAACCCTTTTAGGGATTGAAAC # Left flank : CAAAGGGTGAAGAATGGCAAACCGAGAGCATCCACTCCGAGATTTTTCTTGATCCCATTCGTGGCTTTGTAGGAGCAGAAACCTTTGGACTCAGTGCTTGCGTTACAGGTATTTTTGGTTGCTTGGGAATCGACGATGATTAAGGTTGTCCACTTTGGCTTTTTTGCGGCTTGTGCTCTTACTTGCTCGTGTAATGCCGTCATGATTTCTCTCAGTACTCCTGATGCTCTCCATTGCTTGTAATGCCAATATACTGTGGAGTATGGGGGTAAATCTTTGGGTAAGTCTGCCCAATTACATCCATTTTTGAGTTGATAAAATACTCCATCTAATATTTGCCGTTTTGTCCATGTTGGTGGACAGGTCTTCTTTTTCTTAGGCAACAGAGGTTCGATTATCTCCCACTCTTGATCGCTTAGACTGCTGCTATATCCCATATTTGACTCATTTTTCTTTTCTTCCTAAGATACCAAATGGGTTCTATAGACTCTGTAGGCTGG # Right flank : AAGCCTCTAAACAGCAAGTTGAAAGTGTATTAACTGATGACCAACGCGCTCAACTTGCGATTACAATCCAATCGGGCAACAAAAAGGGTGCATGGAAATCACTGAATCTCACATCTGAACAAAAGTAGAAAATCCGTGACATTCACAAGAGTGACAAGGAGCAAAGCCTTGCTGTTTTGACACCTGAACAACGCACCCAACTCCAACAATTGAGAGCAGCACATCCAGACAAATACAGCAATTCTCATTATGACTTTTGATTAGCCTAAGCCGTCAAATTTTCAACGAAGACATCGGCTTTTCAAGGACAGCTATTGCGACTATTCTCAATAGCTAACGCTGGATCAAGGTAATTTTTCCATAATGAGAATTGCTGAGACAAATAACTATTCTTGGACTTTTCTGTTGCTATGTGCTATGGCGCTTGGTGCGATCGCTACGACCGTCAGAAATCTCCCACAAAAAACTGAACCAAATTTTTGTGGGAATCGTCTAAACTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAAGCCTCTGAAACCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 63398-64131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJL010000006.1 Pseudanabaena yagii GIHE-NHR1 1013Pa_6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================================== ================== 63398 34 97.1 48 ..A............................... TCTGGAGCTTCTGATAATGCAGCTGACAGAGCGTATGGATCGCTAATG 63480 34 100.0 42 .................................. CGTATTCATGTTTATCTCCGAGCAGGTTGAAGCTATCTAACG 63556 34 97.1 44 .........................A........ TAGAAACGGAAGTGCTAACAAAAGAAGTTGGAACAACAGAAGCG 63634 34 100.0 51 .................................. CACTCGTAAAATGTCTTTGCCCCTAGTTGTTTGCCTGTGCGTTGAGTAAAG 63719 34 97.1 41 .........T........................ AACAAAAAACTGTAAAGATTCTGTTGCTACTTCGTTTGTTC 63794 34 91.2 45 .....CG..T........................ AAAACACCGTCACCAGTTGGAGAAGCTGTACCTTCAACGATTAAC 63873 34 91.2 41 .....CG..T........................ GAGGGAGGGTTTGTAGTCCCCAACATTGATGACTTTTATCG 63948 34 97.1 38 ..................A............... TAGCAAGGTGCTAACCTGCGCCAAGATTGCACGGTATG 64020 34 100.0 44 .................................. AATTTGGTAAGCCATTTCTTCTGCCATATCTTCAGGGTAGTGTG 64098 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =================================================== ================== 10 34 97.1 44 TTTCAAACCCATTACCCCGCAAGGGGACGGAAAC # Left flank : AGTTTTTGGATAAGAGACGATAAGTGCTGTCTCAAGTTGTCAAAGTTTCTAGAGGGGCATGGGCGTAGGGTTCAGGAAAGTGTGTTTGAGTGCTTTGTTAGTCTGGATCAAATGAAAAAGCTTTATGAGCAGGTGAAAAAACGAGTAAAACTATAGGAGGATAATGTGCGTTTTTATTGGATACCTTCTGATGCTTTGCCAAAGGCTTTGGCGATCGGTAGTGCGTTGCCAAAGCCGCCACCAAATGTTTACATTATTTAGGTTGACTTTTTTGTTTTTAGCCTTTAGTCTGATTTGTATCGTCAAATCGACGCACCCCCTCCGAACCTTGAAAACCGCATAATTTCGTTGATGTGTGTCGATGCTTTACCCAGTAAGGGTTACAAGATATCCATTTTCTTGAAATTCTGTCAATAAGGTGTTCTTATTGAGACTAAAGTGAGGTGTGTAGATTTACCCTCTTGAAAAGGTTACTAGGTATAGCTCGAAAATTACAGGGG # Right flank : CGGGAGGGAAAGATCGAAGAATGAAGATCGAAGAATGAAGAAAAGAAGAAAATACGAAAAAACAAGAAAAAATAGTAATGATTATTAAAAACAATAAATAATAATTTGTTAAAAACTTAAAGCTAAATTCGATCTTCCGTCTTCTCTCTTTCGTCTTTAGTTCGCGGGGACGGAAACGGGAGAGAAAGGTCGAAGAATGAAGATCGAAGAGGGAAGGGGGGAAGGACGGAAGATCGAAGAATGAAGAAACAAAGAAAAAATCGAAGATTTTCTGCAATAATATAGAATTAAATTCCTAACTTTTTCATTCTTCGCTCTTCCGTCCTCCTCCTTTAAATTTCCCTCTTCCGCCTTCCTTCTTCCGCCTTTCTAATTTATGTTTGACCTACGAGATCGCACTAAAAGCTTTGCATTGAGAATTGTGAAACTATATACAGCCATGCCCAAAACTACCGAAGCGCAAGTATTAGGCAAACAGGTACTGAGAAGTGGCACATCAG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAAACCCATTACCCCGCAAGGGGACGGAAAC # Alternate repeat : TTTCACGCCTATTACCCCGCAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //