Array 1 19793-19564 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGE01000077.1 Ligilactobacillus agilis strain UMNLA5 contig52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 19792 30 100.0 38 .............................. GAGAATGCCCGTTTACTCTTCAAATCTTTAAAGTCAAG 19724 30 100.0 36 .............................. CCGGCTTGCTTTTGTTTGAATTTCATCTCACTATAA 19658 30 100.0 35 .............................. GTTGCTGAAATTACTTTAAATGCAATGAATTTTGC 19593 30 86.7 0 .................A......A...TG | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 96.7 37 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TAAGAGGAATGTAAATCATGCACAGATTATGTATATTGCTAATGATGTAT # Right flank : ATTGAAGAAGTTGAGTATTATATATGGAGAATTAAAAAAAGACATGGGTAGTTGATGGTTATACATGGCTACATTGTCCTGTATGTGGTGAAGAGGTTATGGATTATGATATTTGTGATAATTGTGGATGGCAAAATACAAGAATTATAAATCATGATGGTGGACCTAATCATATGATACTCGAAGAAGTCAAAAAAGCTTATGCTGAAGGACGCAAGATTAATTAATGTCCAGTTATGCAAAGATAGTGTTATTTGGGCGAAGTGTATTATCATTTTGAACTCAGTCTCAGGACTGCTGCCGTAGTTTTTCTAGTGTTGTAATCGAAGTAACAGAATAACAATTATCAAGATAGAATAGGAATATAGTAACATGATGTTTCTACAAGAGTTAGTCAGTTAAATTAGCACTATGATTATAAGCTTAAAAGGAGTATTGGAATTTGATATGTTAGAAGTATCCTTATTTAAACAGAGTTATTTTTATGAAAAGTATAAAAA # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1-155 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGE01000014.1 Ligilactobacillus agilis strain UMNLA5 contig112, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1 24 100.0 42 ........................ AATGGTGGTTGGGATGGATTCACGGGGTCAAAAATATTTACA 67 24 100.0 41 ........................ ATTGTTCACTTAGAATCAGAGAATGAAGATAATAATTTACA 132 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 3 24 100.0 42 TTCCTCTTAAGTTAAATAGAATCA # Left flank : | # Right flank : ACTACCCTTTAAAATCTCTGTACTATCAACTAGTTTCCACATGCATTCTGTCTATCACTACTTTTGTCCCCATATCTACATAATACTTTTTTCTGTGAACTCTTTCAAGCCCAGTGATTTCAACTTTTTCATCATCTGTCGATGTCCCCTTCATTTTGCTCTATCTACGGTCGACAGATGTATACTTGAAGTTTTTTTAACATTACAAGTTATACCTATCTCACTTGCATATTTTTAAAAACAAAAAGAGAGTATAAAAAAATACCGTATATAAAATATACGATACTCACCAGGGCAAGTTATTATAATTGTTAGGATACTTTTTCCTAAAAAAGCATTACATTACAAAACGTTTATAAAACATAAAGCTTGATATATCAACGATTATAACACCCTAAAACACTATGAAACTTTACCTAAGGAGAGTACAGGATTTGAACCTGCGCGCCGGTGTTACCGGTTCGCCGGATTTCGAGTCCGGTGCATTACCACTCTGCCAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCTCTTAAGTTAAATAGAATCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 2579-2737 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGE01000014.1 Ligilactobacillus agilis strain UMNLA5 contig112, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 2579 29 100.0 36 ............................. CTTACAGGAGGTCAAACTTAACTCTGAAACGGTTTA 2644 29 100.0 36 ............................. GAAAGACCCGTTACGCAACCTACTCATCTTCAACAT 2709 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 100.0 36 CTTTACATTCCTCTTAAGTTAAATAGATC # Left flank : CTTATTATTTGGCTGATAGAGTCGGATTGGACCCAGCAGATGAAAACCTGCTTCCCGCCCTTAACTACTCATTTGATTACCAGCTAAATTCAACGCACGACCGCTTCACCCAGCTATTAGCACATATCCACTTGAATCACCAGGATTTCACCTTGGACTTATTAAAAATGCCTGAACTGTGCTTCATTACTAAGCACCGCTGCAAGGAAGTTAAGGTGACAGACGAGAATAGTGAATATTTTGGCCAAGTGATGCAAGAAGCTTTACCTGACCCCGAAGCCGTCTACCTAGATCCAAATGAAATTGCCTATAAGCTGACCCCCGAGGATATGCCCTTAGTTGAGTGGACCCTCAATTTCGAGCCCCTCGACACCTATGAAGAATTGATTAATTACTACCACAACGATAACTAACTAAACCAGCCTATGATTGAAACGAGAGCATTCAATCATAGGCTGGTTATATTTATAGCAGCATTCTCAAGTAGAGGCACCTAATAT # Right flank : CTCTACACTACCAAAACCCTGTACCACCAACTAGTTTTCACATACATTCTGTCTATCACCAAATTCCACCCTCAGTTATATATTACTTTTTTCCCTAAATCCTTTCAAGGCCTATAATATCAACCTTTTTATAGTCTGTCGATACCAGTACTATTTCACCTTATCTTAGGTCGACAGATGCCAGCACTCTATAACAAAATGTAACTAGTAAAAAATGTACTTCACCACAACACTCCATATGCAAACAATTTTGCAGCTAAAATTTCTTACGAGAAAAAGTTCAGTAAACTAAGAAGCATGATGACGCTTATCCTAAAAGCATTCAGTACAAACCATTGAATCCAAGCATTTGTATCGGCATAAATCCCCACTCCATGGGGTTTTAAAGTCCGGCTAATATATGGAGCTGTAATAAATGGAATTATTAGTGCTAACATCTGATATCCTGCATTATACAAATAATTCCGGATAAGTTTCATAAATTTTTATCCCTCAAATTC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATTCCTCTTAAGTTAAATAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 27814-28507 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGE01000079.1 Ligilactobacillus agilis strain UMNLA5 contig54, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 27814 30 100.0 38 .............................. GAGAGTGCTTTAAGACATACGCGTCAGTTTGGTTATGG 27882 30 100.0 35 .............................. GACCAGTACATGCCAAACGTCCCATCCATGTCGTA 27947 30 100.0 35 .............................. GGTAAGTCAGAGTTGGTCAGCGCTCTGGTTGCTGC 28012 30 100.0 35 .............................. AGTATCGTAGCTATATCGCACGAAAGCCAAAGGCT 28077 30 100.0 37 .............................. AATTCTGCCCTTCTATTGTAACAGGAGGTTTTAAAAA 28144 30 100.0 37 .............................. CGACAGCTCGCATTAACTCAGCCACCTGGTTATCCGG 28211 30 100.0 37 .............................. GCGTTTTGTCTTTTTTGAGCTGTCAGACGTTAAAATA 28278 30 100.0 39 .............................. AAGTCTAAGAGCGGTAGACCATTTCCGATGGGGCAACAG 28347 30 100.0 35 .............................. AAGAAAACGGCAAAATGGAGAGGTTGCCTATTTAC 28412 30 100.0 36 .............................. ACGATTGTAATTCTATCAATTGACCACCTTAATTTT 28478 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 100.0 36 ATTTACATTCCTCTTAAGTTAAATAGAATC # Left flank : AATTAACAAAATGCTTGTTCAAAGCGATTACTCGCTAAGCGGCCAGTTTTACCAAAGCCTTGTCTGCTTCTAAACCTGCATTCGATAGCACACCCATTGCACTCGCCGTTTCCGCTAGACTGAATTTTGCCTGGTGGGCTGTTGATGATACATAGGACATCCCAACCCCTAAGGACTGAAACGAAGTTGATGTTACATTAGCCGATTATGCTAGGGTATTAACTGCTTTTTTAGTCTGAACGGTCATTTCTTTAGTTGATGATAACTGCTTACCGTTCTTATCAACAGTCATCCCAAAGCCTTCCAGAGTTTGGAAAGCTACTTCAACTACATCTTTAAAGTCATCACCTGACGCAATCGAACCTTGTAGCTCTGTATTCATTGCTCCAAGGGCTTGTTTGCCAGAGTAATCACGCTTAACTAGTTCCAAGTAAGCATCGGCAATTTCTTTTTGTGACTTCCCGTACCGAAGCGAATACTTTTCACCGTCAGCTTGCATC # Right flank : GGCTATGTTAAATATCCAGGCGTAGCCAAAATCATGATTTACATTCCTCTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 463-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGE01000080.1 Ligilactobacillus agilis strain UMNLA5 contig55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 462 30 100.0 35 .............................. GCTTGTAGGCTAGCCTTTTCTGCGTCTGATAATGT 397 30 100.0 36 .............................. TGACTTTTTTGCTGATATGTCAAACAGGGAGCAATG 331 30 100.0 36 .............................. CATTTTTCACGCGCTGATGTGGCATGTGATATTATC 265 30 100.0 38 .............................. TTGAATGGTTGACCTGGAAACCCCGCACATTTGTTCAG 197 30 100.0 36 .............................. TCTTTTACGTATGTAAAGTATAATGGGTTATACTTG 131 30 100.0 37 .............................. CCGAATAACCAGGTGGCTGAGTTAATGCGAGCAGTCT 64 30 86.7 0 C....C...................G..G. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.1 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TACCAACCTTTTAAACTATGGTGGTGATTTTAAGTGTATATAATTTTAGTCTATGATATTGCATTAGATCAAAATGGTGCTAAAGTTTTAAGGCATGTTTTTAAAATTTGTAAAAAATACCTTAGTCATGTTCAAAAATCTGTGTTTGAAGGGGAGCTTACTAAATCACAGTTAAAGAAATTAACGATTGAATTAAGGAAATGGATTAGAGATGATAAAGACTCTGTAATTATTTTTAAAAATCGTAATAAGAAATGGCTAGATAAACAGTTTTTAGGAATGGATATGTCTGATGAAACTTCAAACTTTTTCTAATTATTTATCTGTCGACCATAGATAAAGCAAATTAGGGGTAACATCGACAGATGATTAAAAGCCCGAAATATCAAGGGTTGAAAGAAAATGAAGGAGAAGGTAATATATGACTGTAGGTGTAAATAAGGTGATAGACAGAATATATGGATTAAGTTATTGATAATACAAGGCTTTTAAGGTGTAGT # Right flank : TTTTGTAAAACCTCCTGTGACCATTGAAGGCCGGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 31683-32930 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGE01000081.1 Ligilactobacillus agilis strain UMNLA5 contig56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 31683 28 100.0 33 ............................ CAAATACGGATATTGTACGGCTAGTAATAGATA 31744 28 100.0 33 ............................ TGGATATAGTTCCCAACTAACAGCGGGGTTTCA 31805 28 100.0 33 ............................ TTATTCCGGCTGAAGACCTTTTACTTGATGAAC 31866 28 100.0 32 ............................ ACAGATAAAGAAGGCGAAAATGAAAACTTTGA 31926 28 100.0 33 ............................ TTGAGGCGGTGACAATTGCCTTACTACGTAAAA 31987 28 100.0 33 ............................ TTGGTCAAGGTAAATTAGACGGCAAACTGTTTG 32048 28 96.4 33 T........................... TGATAAGTCAGAAGAAGTTCTTAAAGTAATTAA 32109 28 100.0 33 ............................ TTAGTAATATATTGGCAATCGGTCCGGGGATAG 32170 28 100.0 33 ............................ AAATCAAAGACACGAAGTATATTGAAGATCCGG 32231 28 100.0 33 ............................ TTGACCGGGCTAATGAAACTTCACAGAAAACAA 32292 28 100.0 33 ............................ TTGTAATCCATTGGATCAGGATCCTCATCAGCT 32353 28 100.0 33 ............................ CACATTCCAATTCTGTTTTTGAAAGGCTGTCGG 32414 28 100.0 33 ............................ TAGTTCTTCAAGCAACTTCACACCGTTGTTTCC 32475 28 100.0 33 ............................ TATAGTTATGAACTTCTTCCGCCTGTTCTGGTT 32536 28 100.0 33 ............................ TAGTGGTGAGAGGACTCTTACTACAAGTGATTG 32597 28 100.0 33 ............................ TCGTACAAGTCATCGTTATGCTGACCGAACCTA 32658 28 100.0 33 ............................ TAATTTGTTGAGCATTAGATACTTCAGTTACCG 32719 28 100.0 34 ............................ TAATTTTTTGATTGTTTCTTAATGATCTTGGTTA 32781 28 89.3 33 ........T.................TA ACTTCACTTTCCTAGAGTCGAAGAAGAGCCATA 32842 28 100.0 33 ............................ CATATGTGCAAGTGTTTGTAAACACTTTTTACT 32903 28 85.7 0 ..............G.......C...AT | ========== ====== ====== ====== ============================ ================================== ================== 21 28 98.6 33 CTTCTCCCCACACTAGTGGGGGTAATCC # Left flank : TGTACGCAGAATAGCATTATTTCAATCAGTGCCGTACGTAAAGTTAGTAAAGAGTATAAAACTTTTAATCGGTATATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACGGGTATTACAGATACATTATTAGTCAACGAAGGTGTTGAACTGATAGATGGACTTAAGGATTTAATAAGTTTTTTAAGAAAATCAATTGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCGTGCAAGCAAGTAGGCTTAGACTTACCTGCTAATCGAGTGGTTGACTTGGCAATGCTCGTAAAAAAGGATAATGAATTTTTAGATAACTATCGCTTTGCAACGGTTTTAAAAGAATATGAGATTGATAATACTCAGCCTCATAATTCTCTGTCCGATTCTATGGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGGTTGCTTACGGATTTAAAAATACCGGTTTATCAACGTTTTTTTAGT # Right flank : TGAATTAAGCCAATAATTCATTGGTAAACATACCATAATGAAATGTATGTAATTATTTTCCTAATTCCTTATACTACTAATATGGACATAGTATATGTTGAGTCTAAGCCGTTACCAATACATAAGTTCTATTTCTAGGACCAAAAACAGAACTAGCAAATGGAGACTAACCACTTGCATCGTGTGTGATGGTTATAGCGAAAAATACCCTCAAATAACCTATATTTGGCTTATTGTTTGATTCCTAAACATTTGTTAAAATGTAGGCAACAAGGGAAGTTGATGGAAATAATATTAGTAGCTAAATTGAGTTGAAGGATAATGGTTAAAGATAGTTAACCACTTTTAGTAACGAGCTGTTAGCGCAAGTTTTAGCATTTTTTAAAAGCAGTTAGGAGGAAAAATAGATGGATAGTGTAAAGTATCAACCAAGCCGGCATATTATGGATTTTCATTTGGCAGGTTTTGCTTATTGTGATGGGTTAGATGTAATTGAGGAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTAGTGGGGGTAATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.50,-11.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //