Array 1 1768653-1766951 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079232.1 Bifidobacterium pseudocatenulatum strain YIT11956 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1768652 33 100.0 33 ................................. CGTATTTTGCGATTACAAGGGATGACAACAAGT 1768586 33 100.0 33 ................................. TGCAATCATATTATGGTAGTACCGTGAAAGGTC 1768520 33 100.0 34 ................................. CCGTCTACGCAATATAACGCGCTGAACGTCACCG 1768453 33 100.0 33 ................................. CGAATCGCGCCACGGCGTCACCCAAGACATGGC 1768387 33 100.0 34 ................................. GACGGCGAGTCCGGCATGTCCGATTACATTGCCG 1768320 33 100.0 33 ................................. TGGGTTGATGGCGGTAATGTTTTCGAGGATTGA 1768254 33 100.0 34 ................................. TCGCTTTGAGGCGAGACGAGCCTGAGCCGCCTGC 1768187 33 100.0 34 ................................. CAGGATACCGTGATCAACGGCGACGTTGGCGTGA 1768120 33 100.0 33 ................................. AGCGTCATGGACGTAGCGCCACTCGATGGCCCG 1768054 33 100.0 36 ................................. ACTACCGATGCGGGCAGTTCCATCAAGGTTGTGGTC 1767985 33 100.0 34 ................................. GCCACGATGGCCGGGCAGATTCCATCGCTCATGA 1767918 33 100.0 35 ................................. ACCGAAAGGAACAATAGATGGCAAAGGGCAGCATC 1767850 33 100.0 33 ................................. GGCGAGGGGGCCACCGGCGAAACCGAAGCCGAA 1767784 33 100.0 35 ................................. TCACGACACGCCGACTTGACGTCATGTATCAAGTG 1767716 33 100.0 35 ................................. CGTATGGGCGTTGTCTGACGGTACGATGGGCACAG 1767648 33 100.0 33 ................................. TCCCACCGCTTGACGCTCAAAACCTTGACGCCG 1767582 33 100.0 32 ................................. CCAAACAGGGTGGATACAATGGCACGGCGCAG 1767517 33 100.0 33 ................................. ATCGTCTCGATTTCCTTGTAGAGCTTCGCGGCA 1767451 33 100.0 32 ................................. CGTGGCGGTGCGGTCCGCGATGATGTAGGCGG 1767386 33 100.0 34 ................................. TCGAACACATCGTAGCGTCCGCGTGACATGTAGG 1767319 33 100.0 35 ................................. CCCGACAAGCGTAGGGGCGTGCACCGTTTTATGGT 1767251 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 1767183 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 1767116 33 100.0 33 ................................. AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 1767050 33 100.0 34 ................................. GATACGATTAAGATGATTTTCGAGCGTCGTATCA 1766983 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 26 33 100.0 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //