Array 1 202955-201667 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTH010000010.1 Providencia alcalifaciens isolate MGYG-HGUT-01465, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 202954 28 100.0 32 ............................ AGCAAGTTACGTGAAGACGTTGAAAACGAGTT 202894 28 100.0 32 ............................ TAAATCAGTGGCGCATGGCTTAACGTCTGGCG 202834 28 100.0 32 ............................ GCCACGTTGAAAAACCAAGCTGATATCTCGGT 202774 28 100.0 32 ............................ AGAGTATGAATCCGATTCCGATCTACGGGTTC 202714 28 100.0 32 ............................ ACCAGCAAGTTTTATGAAGCTTCCAAAGCTTA 202654 28 100.0 32 ............................ AGTGTGGTCACCTGCGTTGAGTTTTTTGAGTA 202594 28 100.0 32 ............................ TTCTGATTCATCATTTAAAACAATCTTATTAT 202534 28 100.0 32 ............................ TAATAACGCTGATGTGGCTAGCCGACCATACG 202474 28 100.0 32 ............................ ACTGACAATCACCACTGGCTTGCCAAAATGAG 202414 28 100.0 32 ............................ AATCACGTCCCCATCCCGTACCGATAGAATAA 202354 28 100.0 32 ............................ CAATGCCCCCGCAAGGGGCTAACCCTTGGAGT 202294 28 100.0 32 ............................ TGACAGAGTGAGGTGTCAATGTCCAACATCAG 202234 28 100.0 32 ............................ TCTGATTACTGGAATCCAGCGATAGAAAAAAT 202174 28 100.0 32 ............................ AATGATGGCTATCAATAGTTGGTTTAAATCCC 202114 28 100.0 32 ............................ ATCAGGAAGGCGGTGAGATTAATATGCCAGCA 202054 28 100.0 32 ............................ AGAAATAGCTAGTTCCGTAATTTGAGAAATAG 201994 28 100.0 32 ............................ AGGGGAAAAGAAAGACGGTATTCAAACTATCC 201934 28 89.3 32 ..........GC.T.............. TATTGAGGGTGTTGTTAATCCCAAAGTTGGAT 201874 28 89.3 32 ..........GC.T.............. GTTATTAACTAAACACGATGCTAGTCATCTTC 201814 28 96.4 32 ........T................... ACATGCTGCACCCACCCAAACGGCTGAAGCTC 201754 28 92.9 32 .........A.C................ ATGCGTAGAGCGTAGTATCTGTGGTGTCCATC 201694 28 82.1 0 ...........C..T......A..T.T. | ========== ====== ====== ====== ============================ ================================ ================== 22 28 97.7 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : ATAAAGTCAATACAAACGGTTCCTGAAAATGCTCGTCCGGTAAGTTATATCCGTCGGCAAGTTAAAGGGACGTCGCGCATTGAGTCGGATATGCAGAAAAAAGCGATGCTTTGGGCAAAAAAATCGGGGCAACCGTTAGCTCAGTGTTTAGCGGATCTCGAAAAATCTCGCCCGACTAAACACAGTCGATTGCCATTTATCTGGGTGGAAAGCCAACAGAGTAAGAGTGAACAACGGGGGAATCGACCTTTCCCGTTATTTATTCAATGTATCGAAGTAGATAAAGCGGTTGAAGGAACCTTTAATTGTTATGGATTGAGTCAGCCTAATAATGATGGACAAGCCTTCGCTACCGTTCCTCACTTTTGACCTTTGTTTTTTGCTCTTTAATAACAAGATATAAAATCAATAAGTTACAGTAGTCAGCAAAAATAAAGGGTATTTTATTAAAAATGCCCTTAACTGATTGTTGTAACTTATTTTTTGTTTGATATTTTATT # Right flank : GAAAATAACTTCATATAATGGAATAACAAAATTGTACTAGAGTGCAATTTGCATCATAATGCAATTTACTGAGGGGGAATATGTATACAGTAAAATATCATTTAGAAGCTGAAAAAGAAGCAAATGCATTACCTCTAAAAATAAAAGTAAAGTATGACCGAATAATACAAAAGCTTGAAAAATTTCCAAATTATTTACGGGAACCGGATACAAAATCGTTAGGAAATGGGCTTTTTGAACTTAGAACAATGGGCAGTGAAATTGCCAGGGGTTTGTGGGTATACCATAAAGGCAAAACAATCATTATCTTGAGGGTTTTTATCAAAAAGTCGCAGAAAACCCCAAAGTCAGAGTTTGATTTAGCTAAAAAACGTTTGCAGGAGTTATTAAATGATGAAAACGCATAAAGAATTGCACGCGGAATGGATGAAAGATCCTGAATATCAGGCAGCATACGAAGAAGAAATTAGAACTGAAAAATTACAAGCGATGCTTAAAGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 215098-214048 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTH010000010.1 Providencia alcalifaciens isolate MGYG-HGUT-01465, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 215097 28 100.0 32 ............................ TTCACATTGAGCCTTAAACTTTACCACATCTA 215037 28 100.0 32 ............................ TCACGATCACCGCCATTTTCCTCAGTCAACTT 214977 28 100.0 32 ............................ GTCATGATGTGGCTCGACAACACGGACACCGT 214917 28 100.0 32 ............................ AAAATAATGGCATTAGACGCACTCTGCATTCG 214857 28 100.0 32 ............................ AAATTAGATAGCTCCGCACTCGATGGGTACGC 214797 28 100.0 32 ............................ TTGGGAAGGTTTTGAGTGGTTAGACCCTGCTG 214737 28 100.0 32 ............................ CGATTATATCGGGGGCATTCATGCCGCGTTAT 214677 28 100.0 33 ............................ CGAGACTCAAGGGAACAACAGGCCGTGACATCT 214616 28 100.0 32 ............................ TACAGCCAAGCGATAACCAGAGGCGATATTTC 214556 28 100.0 32 ............................ AACCAGAGTGATTATATTTTCATTAATTGATT 214496 28 100.0 32 ............................ TTCTAAATAAACCGTATTCAGGTAAACCTGAA 214436 28 100.0 32 ............................ TGATGAACATTGATGACATGCTCCCGGCAACG 214376 28 100.0 32 ............................ TAACATCATTGCAGCCCCAATCATGGCTACAC 214316 28 100.0 32 ............................ TGGCAAAGCAGACCGCAACGATATCGCCTACG 214256 28 96.4 33 .........T.................. CTCCATCTTGTCACGGACGTCATAATATTTGTC 214195 28 96.4 32 ..............G............. GGAAAACCTGCTCGCTGTAGTGGATAGATTGC 214135 28 85.7 32 ..........GT.C..........T... GAAAGAAGATGAGCAGAAAATCGCACTGTAAT 214075 28 89.3 0 ..........GT............A... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.2 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : GATACCCGTTCAATCCAGAATTCGGCACGTAAAAGTGAGTTGTTAGAGACTAACTGGACCGCAGCCACAACGGATTATTATAAAGAGAAGGCGATGTTCCAAGCTTCTCAAGATATTTTCAAAGATCTAAACAGCATGTCATTATTTGGTGGCCGTTAATTGATTTTTACCGCACCCTGTAGCAGTGGCATGTGTATCGGGTGCGGGTTTTCTTCTGAGATTATTTTCAATTTTCCCTTCTGATTTTTCTCGCCTAATTTTTTAGTGTTTTAATATTTATATTCCAATCTATATTTCCGCTTTTCTCGTTCGAAATAACAGAGTTTATTTTTCTGTTGTTGGCTTATAGTATTTTTCACGATAAATTTGACCTTTGTTTTTTGCTCTTTAATAAATTGCTGAGTAAACAATAGGTTATTTGTTAACTGAAAACGGAAGGTATTTTAGTGTATTTCGAGCTAATCGGTTGTTGTGATTTGTTTTATCTCTGATAAGTTATA # Right flank : GGATGTAACTAAATCAGTGGCTATTAGCTCTCATCATTAACAAATCTTTTGATCTTAGCGGCTTGCTTGGATAATCCATCAAAAATGGCGTTACTTATATGCTTAGGAAAGTCTGTGGGTAGCTGAGGCAATAGGGTAGCTATAACAGTATCTGTTTTATCGGCCATATCAATCATGAGTTGAGTTGCTATATTTTTTGAAAAACCGACATATTCAGCGGTGCTAATGAAATGACGAGGTTGAATTTGTGAAAAATGGTATTGCTTATTTTTCCCTTGTAATGCCATCGCCATTTTGGCCTTTCTGACCTCAATCCCTCGTGCAGCAAATATCGGGAACGCGGACATAACATCATACAAGGGCGTTAAACGAAAAGATGACCCAAGTTCAATGAAGAGAGAAAAATTCTTGCCATGTCCGTCGATTGCACCCAGCATCCAGAACAGAATTTGTGATTTAAAGAACATTTCCCTGTCTTCTTGTGGTGTTTTCGAGCCCAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //