Array 1 8950-12274 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFW01000029.1 Amycolatopsis alkalitolerans strain SYSUP0005 Amycolatopsis_sp.strain_SYSUP0005_Contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 8950 29 100.0 32 ............................. CGGGCAACCCAGATGAACGCGTTGGGGACGGC 9011 29 100.0 32 ............................. CCGAAAGGCAATCCCCTGTGGTAAACGGAATT 9072 29 96.6 32 ............................C TGTCTACGCTCATACACTAGATGTCCACCGCG 9133 29 96.6 32 ............................C GGTCGCGTCGATGCTCGGCACGCCGTCCACGA 9194 29 100.0 32 ............................. AACAAGCAGGAGCGCCGCAAGATCTACCGGCA 9255 29 100.0 32 ............................. CCCCAGAGCCGAAGAGACCAGTACGGAGCGAC 9316 29 100.0 32 ............................. CACTCGCAGCCCCTCGGGCTGCGCAGTAATCC 9377 29 96.6 32 ............................T TCCGAGGTTCGTGAGCCGCTCAACCGGAGAGT 9438 29 96.6 32 ............................C ACGCTAGAGATCGACTACGACGCGTGGTCCGC 9499 29 100.0 32 ............................. GGACCGACCCGGCGGCAGGAGAAGGAGACCAC 9560 29 96.6 32 ............................C CCGGTTGCCGTGCACAACCTGGCCGCCGCCGT 9621 29 100.0 32 ............................. TCCTGCAAGCCCGACCCGTATTCGGTGGTGGT 9682 29 100.0 32 ............................. TTCGTCGGCGACTCGCAGTCGGCGAGCATGGT 9743 29 100.0 32 ............................. CAGCTGTCGCCCGGTCGCCAGGGCCGGCGAGA 9804 29 100.0 32 ............................. TCTCTTTGCGCCACGTGGACAGCATGGCGTAT 9865 29 100.0 32 ............................. TGCTTGGTGGGCCACAGAACCCGACGTGGGTC 9926 29 100.0 32 ............................. GGACTCGCAGTCCATGGAGACTGGACTGGACG 9987 29 96.6 32 ............................C CGGGGGAGAGAACCAGGTTCGCCAAGATGGCC 10048 29 100.0 32 ............................. TGGCTGTCCGACAGCCCACCGGAGCAGTGGGA 10109 29 96.6 32 ............................C GCCGTGGAGGTCGGGTTCTGGGCCATGTTGTT 10170 29 100.0 32 ............................. GAGGCAGACGACATGCAGCCCCATACGCTTCC 10231 29 96.6 32 ............................A ATCTCGACGGCGACGGGTGGAGCACATTCGAC 10292 29 100.0 32 ............................. CGCCAGGACCCCGAACCCGAGACCGAGCCGGA 10353 29 96.6 32 ............................C GCCAGCGACCCGAATAGAGCCTTGATCCCCTC 10414 29 100.0 32 ............................. GCGACGTGATCACGATAATTATGCGGGAGGAG 10475 29 96.6 32 ............................T TCAAGCTGGTAGTCGAGAAGGCCACCTCGAAG 10536 29 96.6 32 ............................T TGTTGAGGTAGACCGTGGCCCGCCCGCCCGGG 10597 29 96.6 32 ............................C GTATTGCCGACGCCGCGGATTACTCCGTCGCC 10658 29 96.6 32 ............................C CGGCCCGCGAGGATGGCGCACCGGGGGCATGA 10719 29 100.0 32 ............................. CGCGAGCTCTCGCAGGTATTGACTCATTCTCT 10780 29 100.0 32 ............................. GGCCCGTTCGCGGCCACGCAGACTATCGCAGA 10841 29 100.0 32 ............................. ACACGGAAGGTATAGCAAACCACCGGGTCTAG 10902 29 100.0 32 ............................. GTGGCGGAGCCTGGGTAGGTCATCGGGCCCCC 10963 29 100.0 32 ............................. AAGTCCACCAGAGGAATGCCGTTGGTGCGAGC 11024 29 96.6 32 ............................A CTCCGTGAACCCGAGAGGGGGCCAGTCGTGCC 11085 29 100.0 32 ............................. CCGCCACAGGTTCTTTTCGCCCCGACCAAAGG 11146 29 96.6 32 ............................C CGTCGTTCCTGCGCCCATCCCTCACACTGGAT 11207 29 96.6 32 ............................C CGCAGCCCGATGTTGAGCAGAGCCACCGTGTG 11268 29 96.6 32 ............................C AGGAGCGCCGCGACCCAGGCTATGACCATCAC 11329 29 100.0 34 ............................. CATACGGAGACAGGCACTGTCGCGGTGTTCCGGT 11392 29 96.6 32 ............................C TGGGTGCCGCAGTGGCGGAGTGGGCGCTGGGA 11453 29 100.0 32 ............................. TGGGGACCGGGATGCGCGGCGACGATTCTCAT 11514 29 100.0 32 ............................. GAACTCCAGGACAACCCCCACGCCGAGCACCT 11575 29 100.0 32 ............................. ACTACCCCGACGTCGAGATGCGCGTCACCGTC 11636 29 100.0 32 ............................. CCGCACTCGTTCAGCACCCGGAACAACTCGTC 11697 29 100.0 32 ............................. CGGACTTCGGGTCGTGCGCTCGGACAGCTGAC 11758 29 100.0 32 ............................. GGCGACGGCGTCGCCCCGAACCTGCTTGGCAC 11819 29 100.0 32 ............................. TCACGTCCGTCCGCCCGGCCGCGAGCGGAGAC 11880 29 100.0 32 ............................. TCGTCGGCCCCAACGCCTCTGCGATAGTCTGC 11941 29 100.0 32 ............................. ACATCCGATCCCCGGCTGCAGTCGATCGCAGG 12002 29 96.6 32 ............................T GAGATCAGTCCGGCGGTAACAGGAGCCCGCGT 12063 29 96.6 32 ............................C GCCGCAGGGCACGAGCCCCCGAAGTCCGGGAA 12124 29 96.6 32 ............................C AACAGCGTGTCACCGACTGTCCACCCGGACAC 12185 29 96.6 32 ............................C GCCATGTCAGCTCGATCAACCAGATCCCGGAC 12246 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================== ================== 55 29 98.6 32 GTGCTCCCCGCGCAGGCGGGGATGATCCG # Left flank : CACATGATCGTCATCGTCCTGACCGCCGTGCCACCCGGACTCCGCGGGCACCTCACCCGGTGGCTACTGGAAATCAGTCCAGGCGTGTTCGTCGGGCATCTACCCACCCGCGTCCGCGAACTGACATGGGAACGCGTCATCGAGTTCGTCGACGACGGACGAGCGCTCATGGTTTACACCGTGAACGGCGAGCAACGACTCGCGTTCGAGGTACACGGACACGACTGGACACCTGTCGACTACGACGGCATCACCCTCATACGCCGACAAACGGTCCCCGACTACATCCCGGCCAACGGACCGACACAGCAACAACGAAGACCAGCCCGCCCCTCCCGTGGTGGAACGTCCATGCGAGATGAGACCGTGTGGAAACGTCGGCAAGCGCGACGAAAATTCCGCCCGAAACCACCGCCGGCAAACGAGAAAGATTGATCTTGAGTCGGGGCAAAGTGAAGCAAATCGAGCAGATCTGATCACATCGACCCAGGTCAAGAAGT # Right flank : CTCTGCGAAATCTTGTCACCGACACGAGGCCCACGTCGGCAGGACCGTACGTAGAGATGCCGAAGCGAGGGTCAACGCGGCGTTGCCCCTCGCCGAACTCAAGCTTGGGCTCGGTGAGGATCTCGACGTACATCAGCTACTTCTCCGACGGCGGCGGCCTCCAGAGCGTGGCGGCCGGTTGGTTGTATGTCGACGTGCGCTTGGCGCGGGTCGATCTTGATGCTGCTAGCCGCGCGCCGGGAGGCGGCAGGCGGCGACTTCGGTCGAGCGGGGTTTCGGCAGAAAGGTGGAAATAGTCCGGTTAGGACCGTCTGGTCAGTGGCGATCGTCCTCGGGGCAGGGGACTTTGGCCACTACATCTGCCGTCGCGGGGGCGAACACCATGCCTGCAGACAGCAGGCCGGCGATACGGCCGGATCAGGAGGTATGGCATGGCTGTTTTCGCCCGCGGGCCGGTGGATCTGAACACCACCGGTCACTACCTGCATTGGGGCGTCATC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //