Array 1 87393-88336 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFFR01000032.1 Escherichia coli strain BE1126 sequence32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87393 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 87454 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 87515 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 87576 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 87637 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 87698 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 87759 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 87820 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 87881 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 87942 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 88003 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 88064 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 88125 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 88186 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 88247 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 88308 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114036-115711 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFFR01000032.1 Escherichia coli strain BE1126 sequence32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114036 29 100.0 32 ............................. CCGTAAGGGCAATTTATCCAATAAATTTTTAG 114097 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 114158 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 114219 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 114280 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 114341 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 114402 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 114463 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 114524 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 114585 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 114646 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 114707 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 114768 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 114829 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 114890 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 114951 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 115012 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 115073 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 115134 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 115195 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 115256 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 115317 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 115378 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 115439 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 115500 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 115561 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 115622 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 115683 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //