Array 1 137824-136794 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000001.1 Nostoc punctiforme FACHB-252 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 137823 36 100.0 45 .................................... TGCATGAGCCTTGAACTTATCGTGCTGAGCGCATAACTCAAGGTA 137742 36 100.0 37 .................................... TGTAATTGAGTAATAGATTGCCATCTCTCATTGGATT 137669 36 100.0 41 .................................... ACTTAACAAAAGCATCACTATCCCAAGTAACATCTCCGATA 137592 36 100.0 42 .................................... AGGTGAATGAAGATGTGAGTTAGGACAAGCTTGATAAGCTAT 137514 36 100.0 40 .................................... GAACCTTTGAAGTAAGTTTCTCCTTCTTCCCTACCTTGAG 137438 36 100.0 44 .................................... AACCTCTACCTCAAGTAGATAGTCAGTATTAAAGAATGTATCTA 137358 36 100.0 38 .................................... TAAACGATAAATTGATGCAACCGCTCAATTCTTTTACC 137284 36 100.0 40 .................................... TGTCCTAGTATTTAATAAATTAATTTGTGGGATGAAAGTA 137208 36 100.0 38 .................................... CAGTTGGTGATGTCTGTAGCGTCCTTTTCTGGATTGAT 137134 36 100.0 41 .................................... TTGTTTAAGTACTTAGCTAATGTTTCGTATTGAGGTTGCGT 137057 36 100.0 36 .................................... TGTCGGAAACAGCACCCGTCCATGCGTTGCCAATAT 136985 36 100.0 40 .................................... TGATTTGTATCCCACTGCTTGAGATGAATCTCCCAAGTGT 136909 36 100.0 44 .................................... GACAACCAATTGGTATCTGTGGCCGCAGGAACAAGGGCGATCGC 136829 36 94.4 0 ..............A...............A..... | ========== ====== ====== ====== ==================================== ============================================= ================== 14 36 99.6 41 GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Left flank : GCAGTTTCAACTGGGATTGTTTATGATGAATCAGCATATTATTGGTGTAGCTAAAAAATGAACAAGTAAGTTTTTAATAATTATTTTTTGGGAATATAAAGTTAATTTTTCAATATTACGTGGAGAAAAATCGAACCGCAAAGTACGCAAAGTACGCAAAGAGATAAGAGTTTAAGTAGGTAGCTATGATTAAACAAGTTGCAAGTAGCAAGTATAGTTTTGTAATGGGGATTTAAATGCCACGATAAAATTTGCTGGTTATAAAACTGGGGGATTTAAACCCGCAGAATTTGTTAAATCTCAGAAATTATTGTTTCTGTGCGGCGGGGTCGAGTCTATGGTGCAAATGCTGATTCTCTCGTCAACCCGGCCGATATCCTTCTACACAAGGGTTTCAGGGTTTTTCGCCTCTGTTTTTTCTCTGGAAACAGCCTTCGGTTTCTACCCCGTCGCAAATGGCGTCTGGACATTAGGTGGTGTCAGGGTTTAAAGTAGTAGGG # Right flank : CAGCAATCTTTCTTCCATACCAACATTACCCTGCAAGCCACCTGTGTGTACTAGCAGCAAACTTTTGCCTTTAGCAAAAAAACCCTGCTGTAATAAATCCATCACGCCATAAAACATTTTGGCAGTATATACGTAATCAAGAGGTACATTGTGCGCCGAGCTAAATTCTTGGCTGAATCGTAGCAACTCCTGATTTACTTTTGCATAGCCGCCGAAGTGATAATCACACATTAATTCCCAAGAAGCAGGAGAATTATATGGACTCGGTAACCCAGAGGCGAGGTAATTTGTCAAGAGATTTTCGATTTCTTTTCCTAGAAAATTGCCATTTTTCAACACCGGAAAAGCGATCGCTTTTTGTCTTTGATTTAAAGAAAGCGCAATTCCAGCCAGCGTTGTTGCAGTACCGCAGGCTAGGCAAATATAGTCAAAGGCATAGCCATCTGTAGACATCCCTTGATTAATTATCTCTGTACAACCGCGCACGCCGTTTAAATTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 67175-68054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000021.1 Nostoc punctiforme FACHB-252 contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================================== ================== 67175 36 100.0 43 .................................... AAGAAAAAAGGCAGATTGCCATCCAGGATTTTACCCGAGGGGG 67254 36 100.0 35 .................................... CCATACATAGTCCGTCTTTCTGGATTTGCTGACTA 67325 36 100.0 35 .................................... TGTTCCAGTTAACTGAAACAGAGGTAATAAGGTGT 67396 36 100.0 33 .................................... CCTTGGATGGCGCTTTGATCTCCCCAAGCCCCA 67465 36 100.0 75 .................................... TGGTGGCAAGGTAGTATAGGTATAATTGTTCGTGGTCGTGGTGGCGGTAGTAGAAAAATTACCATTACCACAAGA 67576 36 100.0 39 .................................... AGCGTACTGATGGGTGACAACCAGTGCCAAACCTTCCAA 67651 36 100.0 41 .................................... TAGACAGTCACATCTTTTGTGACTTTATGTTTTTTGATGAG 67728 36 100.0 35 .................................... CGCCAAACGCAGAAATACAGTTATTCTCGTAACGT 67799 36 97.2 38 ...............T.................... TCGCATATGTCAGAGTAATTCCAAACGTCTCCATAATA 67873 36 100.0 37 .................................... GAGAACTGTCGCAGTGACAGCAATCGTCACTGCTCCA 67946 36 100.0 37 .................................... TTTTTGGTATAGCTTTGAAAATTTGGAGACCCGTATA 68019 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================================================== ================== 12 36 99.8 41 CTTTACCGATTCCCTGAAATCGGAATTAATGGAAAC # Left flank : AATTATAAGTAATATTCACATTTGATTTACTTTGTTGGTACAGAGGCTTAATTTCTTCCAGCGCATCTTTGAGGCTAGCAGCGGCTGACACAAGTATGTTGTTAGACTGGGCGATTACGGGAGAAGGAGTAACTAGTGGTAAAATAATTGCTAGCAATAAACCAGCAATTGCTATACCCAAAAAGCCAAAAACTTGTCTTCTTTTCATGGAAAAAGCACTTTAGAGGTTTTTTTCATCAAATTGATGCTAGCTAGAATCCTACCAAAAATACCAAAATTTACCCAACTATATCGGTAAAATTTTTGTATCAGATGTTCATCGACACACCCCGCCAAATCCTCAAAACCCTATATTTCTCGTTGAGGTGTGTCGATGCCTTACAGGACAAGGGTTTGAGGTGTGTGTTTGACTTAATTTTTCACAAGATATATAGTCTTTTTCAGAGGTATGTCGATTTGGCGGCTGAAAGCCTTGCGGGGCAAAGCCTCCTGAACGAACT # Right flank : CTTCTTGCTGTTGAGATGCGGTACGACATCATCACTTGTAGCCGCCTTAGCAAGGAATCCCCATAAAGCAAGAATCCCACGGCTTTTTGTTAAACTGAGCAAGAGCGATAGTTTAACAGCCGTGGGATTTTCAGTTATGCCTTCTCCATTTCCTGGTATGAATCCCTATTTGGAACATCCTTCTCTCTGGACAGGAATTAATCATACAACAACTCAAGAAAATACGGATTACGAATTACGAATTACAAATTATTAGCCATCTCTAATAACTGTGCTTCGGTTAGCTGGTTAACTCCCAATGAAATGGCTTTTTCTAACTTAGAACCGGCATCTTCTCCTACTACTAAATAATCTGTTTTTTTACTCACAGAATCAGTCACTTTTCCGCCGGCTTTTTGAATCAATGTCTTTGCTTCATCGCGTTTTAAAGTTGGCAATGTACCCGTAATTACAAAAGTTTTTCCAGCAAATTTTTCATTAATATTATTAACTGTTTCTGT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTCCCTGAAATCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 279611-278541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000011.1 Nostoc punctiforme FACHB-252 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 279610 37 100.0 36 ..................................... GCATTTTTTGCGCGACCATGCTAGCACCGTTCGTCT 279537 37 100.0 34 ..................................... TGATCTGATAATGGCGTTAGCGATCGTATCCTTT 279466 37 100.0 36 ..................................... TCACAGCTGGACTTCCAAAAAGCCTCTCTTGACTTA 279393 37 100.0 39 ..................................... AAATACAAGGTAGTATTTATTAGTTTTAGGGCATTTTAA 279317 37 100.0 38 ..................................... ATTACGCCTACCTTGCTGATGTCCAGGATGCTGGAGTA 279242 37 100.0 35 ..................................... TGGTAAAAAAGAACAATTCTTGTCTATGTCGGGAA 279170 37 100.0 34 ..................................... CTTTAGGTTTTGAAATTTGGGTATGCTTTAACGA 279099 37 100.0 37 ..................................... TTAATCGCTACACAAAACGCCGGGAAAATAACTGTGG 279025 37 100.0 31 ..................................... TTGGTTGGACTTCGCTGCAATAGCCTAAGAA 278957 37 100.0 36 ..................................... ACGAAAAACCGTTCTGAAGATAGCCATATGAATCGA 278884 37 100.0 42 ..................................... TAAATGTTATCCACCAGCAACTTAATCAATCTTTTGCGTTGT 278805 37 100.0 38 ..................................... TCGGGCAAATCTGTCTGATACTTCTTCGTTTTCGTAGA 278730 37 100.0 41 ..................................... TTACCTTCTAACACATGACACTTGTAGGGAGGCGAAGGATC 278652 37 100.0 38 ..................................... AAAAAAAGCTGGAGTTTGAGGAACAATGCTTCGGCTGC 278577 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 100.0 37 GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Left flank : CAAATCCAATTAATACCCCACGCATGGATTTGTAAACCGGCGGATACCAGCAAAAAAATGATAATAAAAGCGATGGGCATTGCCAACACAACCCATTGCCACAGCTTTAATCGCACCATTACCCTACACCTTTTAAATCACTCTTGTAAAAAGTTTATCGTTTTCAATTTGGGTAGGATAATCGTTCTATGGGTTGACTGTTGACTGATGACTGATGACTGATGAGTGTTGACTGGGGGTTTCAGCAATGATTTGCGCGGAGCTTGGCTGTTTTTTTAGATAGTAGAATATTTAAGGCTGAAATCTTTACTGTGAGTGCATTTGAGTGATTTTTGCTAAAAATAGATCCGCGCAAGCTTTGAAAAGGTTGTGTTATAAGGTTTTCAAGGATTTTTGTTTAACCCAAATCTTGACAAGCGATCGCTCAAACGTTAATTTTGAATAGACCCGCGCAAACAGACCTTACAACCCTGTTTTTGCAAGCCTCCCAGAGTCTTGCT # Right flank : ATACGTTCAGAAATTTCAACCCGCTCAAGCGGGTTTATTTGTTTAGATACTGTCTATAATTCAATACGATTCAGTTAAGCATTTCTTCCTTCTCTTTGCGTCCTACCCTGCGGGAAGCCACTTCGTGTCTATGCGTCCTTTGCGGTAGCCTGCGGCAAGCCGCTACGCGTCTACGTTAAAAAAATTGACATTGACAAAGACTTTTAGCCTTAACTAAACCGTATTGGTCTATAATCCAATACAATTCAGATAACACCAAAACACTTGTAGACAGCGATTTATCGCGTCTGGTAGTCCTCTGCCTTTCTTGATAAGTAGAAGAACTAAATTAAACCTAACTCAATATCGCCGGGTTTCGACACTTCGACAGGCTCCCTTCGACAAGCTCAGGGCGGCGCAGTGCATCGCTGCGCTCAACCCTCTTGGAATAAGCTTAACGAGCATTGAGGGAAGTCGAAATGCATCTTCTAAATAATTGTGTCCACCTACTTCAACTAAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 69635-70854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000024.1 Nostoc punctiforme FACHB-252 contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 69635 36 100.0 37 .................................... CTTGCCTCGTCAGAAAAAATACCAACTTGAGAAAATG 69708 36 100.0 37 .................................... TATAATTTAATTTGCGGTAAGTTACCCACCCCAAGCT 69781 36 100.0 34 .................................... ACTGCTTTCTAATTATTACAAAACTAGCAGGAAT 69851 36 100.0 36 .................................... GTGTGATCTGACAAAATGCACTGAACCGAATAAACC 69923 36 100.0 37 .................................... AGTTTCGACACTAGCGACATTGTTAATGCTTCCATTT 69996 36 100.0 37 .................................... ACAGCGATGGAAGTTAAAACGTTTTTTCCGTTTATGT 70069 36 100.0 34 .................................... TTTCCATCCAGGATACGGATCTCTCCGTAAAGCC 70139 36 94.4 46 ..........C..C...................... TTTGTACCGTACAGGGTTGTTACCACCCCGTTGGGGACACCGTTTA 70221 36 97.2 36 ..........C......................... TTTCCCGTTTCCGCATAATCTATAAAATGACCGCCT 70293 36 97.2 35 ..........C......................... CCTCTATAGTAAGCAAGAACAAACATGTTGTCCTG 70364 36 94.4 36 ..........C...............C......... AGAAGAGTTACTATACCGATCAACACGGTAACCCTG 70436 36 97.2 43 ..........C......................... AAATTTGATCCTACTCGACTAGCTACAACCTCGGTAGCTTTGC 70515 36 88.9 39 .C........C..C............C......... TCCATCCCTTGTGCTTTTGAAATTCCAGCTTGCTTTATT 70590 36 97.2 37 ..........C......................... GTGTTGATATGGCCGAAAAAGATTCTGGGTAAGACTG 70663 36 94.4 48 ..........C..C...................... GTTAACGCCATTAAAGCGTTTTCCACCTGTTCAGTAGTGATATTGTTG 70747 36 94.4 36 ..........C..C...................... GTTTCAGCCCAGATGTTTGTTCCACATGGAAACTGA 70819 36 91.7 0 ..........C..................CC..... | ========== ====== ====== ====== ==================================== ================================================ ================== 17 36 96.9 38 CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Left flank : GGAGCAAAGGTTATGGCTGTATATTTGGTCACGTTTGCTTTTGTCACTGGTTGCAGTCTTGTTTAAATTACTGTAGAAATTTGAGTTTTTATTCAGTGGTTATACTTTGTAATAATTCTCGATTTGGGTAATTAGGAGTTATGTAAGGGTGGGTGAGTTATTGTGACTTTTATATCTTGGCGGAAATTTTGAGGATGTAAAGGCCTTTTCATGCGAATGACGAAATTTTTTTTAGAGATGATTTATTTCACGCAGAGGCGCAGCACTTCGGCTACGCTCAGTGACCGGCGCGGAGAGGATGAGGAGTTTGAGATGTTCATCGACGCATCTCGCCGAATCGCTGAAACCCTATATTTTTCGTTGAGATGCGTCGATGCTTTACAGGGCAAGGGTTTGAGGTATGTGTTTTACTTAATTTCGCACAAGATGTATAATCTTTTTCAGAGATGCGTCGATTTGGCGGCTGGAAGCCTTACGGGGCAAAGGCTCCTGAACGAACT # Right flank : CTAGAGCATTACACCAAAAAAATCCCCGGTTTTCCTAAAAAGCCGGGGATTTTATTTTGAAGACGCGATAAATCGCGTCTCTACAATGAGGTTTTGGGTTATTGCATTAAAATCTGACGGATTAAAATACTCATCACTTCGTCAGCATTACCAGTTCGTACTAATGGACTCCAGTCGCCGACGCTAGCGTAGCCAATGATTTGCAGATGGTGAATTGTGCCGATAACTGCTTTTGAAGAACCCATTAATAAATGTTTAACCGGTTCTCTTTTGGGTAATGGATTTTGAGCCGGTTGATTTAAGACTGGTATATTTAAGTTCTCGCTATCCAAGTATTGTTGCAGTTCTGATGGATTTTCTACAAACTCTTCTTCTTGTGCCATGATGATAATTAACTCTCAGAATGGGGGTTTAGGGAAAGGCGATCGCAAGCTCTTGCCGGAGGGCGATCGCCTTTCTTATTTGCATATTAAAGTATAATTTTATACTTGTAAAGCACC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATCGCTCTAAATCGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 253166-250409 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000003.1 Nostoc punctiforme FACHB-252 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 253165 37 100.0 32 ..................................... AGAAAGACAACACGAAATACTTACGGCTTGTG 253096 37 100.0 40 ..................................... GCGTTCACCACTGCCAGGAAAACTACATGGATTCCCTAGA 253019 37 100.0 34 ..................................... TAAAGCTGGCTGGTAACGCCCATATTCTTGTGGG 252948 37 100.0 32 ..................................... ATATTTGGGTTACTGCTAGAGGCTTTGTGCAA 252879 37 100.0 35 ..................................... CAGATAACGCAGTGTGAGTAAAAAATTGATTTGAA 252807 37 100.0 35 ..................................... TTACTTCCATTAGCAGGGGAGAAATTGCTAGAAGT 252735 37 100.0 34 ..................................... TATTATCAATATCTTGATGAGATTACTACTAGTG 252664 37 100.0 33 ..................................... TTTAGCACTGGCTAGTAACTGTAAATTCCATAC 252594 37 100.0 40 ..................................... ACACTCCGGGAGACGGCTCCTACTTGGAATCGCTTCAAGA 252517 37 100.0 34 ..................................... ATTATCCGAACAATTTTCCTCAAAACCCGTCTCT 252446 37 100.0 41 ..................................... TCAAAATATCTACTTCGCGTTCCGATAAGCCCTTTAGTTTC 252368 37 100.0 34 ..................................... AGCATCGCCGCAATTGACGACACCCACGAAGTTA 252297 37 100.0 35 ..................................... ACTCAAGCCAGCCCTGTCTTCCTCAGAGTAGCCAA 252225 37 100.0 34 ..................................... ATTCGGTTGTTTTTGAAGTAATTTAGAAATCAAT 252154 37 100.0 35 ..................................... GGAATTTGATTACAGTAAATAGAGGTTAAATATGC 252082 37 100.0 35 ..................................... ATGCCATCAGGTACATAAACTCCCCAGCGAAATAT 252010 37 100.0 35 ..................................... AACTCTTCTCCAGCTTGCAATGCGGCGGCTTTAAG 251938 37 100.0 35 ..................................... AATAACGGTTTTTACAACTCCACCGAGTTCGAGAA 251866 37 100.0 40 ..................................... TAAAAAGGAAGAGGTGGAAAATGCGATCGCGGACGGTCAG 251789 37 100.0 36 ..................................... TGGTTGTGGGTAATTGTTGTTCATGATTTTGATGTT 251716 37 100.0 41 ..................................... AAAGACAGATTAAAACCAGAGCATTTTTATCTGAGCGCACA 251638 37 100.0 36 ..................................... GTGGAGTCGGGGATGTAACAATAAGAGTTAATGGCA 251565 37 100.0 34 ..................................... GCATTCATTTCAAAAGGCGGGTCTGTAAAGACTA 251494 37 100.0 37 ..................................... AAATATGTCGTACTCCAAATTATCGCATCACTCTTTG 251420 37 100.0 34 ..................................... GATTAATGCCAGTGAGTGATGCCATATCGGCGAT 251349 37 100.0 40 ..................................... CTCTTGTTGTTCATATTCAAGCTACGTGGCTTCAACCGGG 251272 37 100.0 37 ..................................... AATTCCTCTAGTAATCTATCGTGCTTCCATTTCTGAT 251198 37 100.0 34 ..................................... TGTATCCCCCATGCCGAGCGACTTCGGTAAACGC 251127 37 100.0 36 ..................................... TACTGCTAGTGTGGTAATAGTTTCGCTCTCGGTCAA 251054 37 100.0 38 ..................................... AATTCACATCACTGGATTACAGCAATGCCGATTTGTAC 250979 37 100.0 42 ..................................... CGGTATTGAAGTAGATATACATTTCACTTAAACAATAGTGTG 250900 37 100.0 35 ..................................... GACATCCTAAATGTCATGTTCCAAGGGCAAGCGAA 250828 37 100.0 43 ..................................... TTGTACTTCAATCGCACCTTCGGATGATGAGTCCAAAAAGGGG 250748 37 100.0 39 ..................................... GAGATTGAAGAGAAAGCTGGTGTATTGGTGGAGTTGCGA 250672 37 100.0 35 ..................................... CTAGCCCTCTGCCGCTTCTAACGGGTGATTGCTTA 250600 37 100.0 39 ..................................... TTCTGATTTCCCCATCCACCTCTGCCCGCGTTGCCCGAT 250524 37 100.0 42 ..................................... AATTCAGTATTGGATTTAATATGCAAAGAAACCTTATATGGA 250445 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== =========================================== ================== 38 37 99.9 37 ATTGCAATTAATTAAAATCCCTATTAGGGATTGAAAC # Left flank : CCAATATGCCAGGAGCCGTACCTTGGACAGCAACTCAGGCACTCAATAACAGTACATTACCTTATGTTGTGCAGTTAGCGAACTTGGGAATTAAAGCATTAGAAGTAAACCCAGCCTTAGCTAAAGGTGTGAATGTGCAAAATCATAAATTAGTGCATCCTGCTGTGCAAGAGGTTTTTCCTGATTTGGTGAGTTAGAAGCTGTGCAAGTGTTGGGCGATCGCCTATGCTAATGGTGGCAATCTTCATCAATTAGACTAATTTTGTTACCAAATGCGCGGATGGGTAGCTGTAGAAAATCAAAGCCAGCAAAAAATGGCTGCATCTCAATGTGTACAAGGTTTTGACGACTATAGAACTTTTAAACCATCCGCGCACCTTACGGAGACTGAGTTTCAGCGATTTTGAATTGTTTGACTACCATTTCCTGTGTTATCATTCTGTACATCCGCGCAACTGCACCTTGAAAACCAAATACAGCAAGTCTTTTTAGTGCCGGCG # Right flank : TCTGATTTTTGAGTTTATACGAAATAAAAGCCTTGAAGTTACGCCGGTTCTCGATGCAGAGGAAGACGTAGCAAGCATTTGAGAACAAGAGTCATATTGAATAGCGATCGCCATTACGATTGTATCGCTGGAGTACTGGCATTTGAGGTCATTTTTGCCTTATCGCCCTCAGACTCAGTACAATATTTCACCCATTCAGTGTATGGCGATCGCTTTCCTCTTTGGATATGCTTTAAGAAGTATTAAAACTAGGCTCCTGTTTTTCGGTATCCGTATCTGAGCGATTGTAATTATTAAACTGACAAACTTGAGAAATTTAACAATGAAATCCTTTTCTATTCCCTTAATTGTTGTAATGAGCGCACTTGCTCTTCCCCAGAGTGCCTATGGTAACGAACAGAATGTCCCAAATGCAACAGGCGATGGCAATCAGGCTGAAGCTTTATTGACTCAACCCGCCTCCATTAATACTAAGTGGAGAAATTTTAGCGGACAGACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAATTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 17473-16633 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000045.1 Nostoc punctiforme FACHB-252 contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 17472 37 100.0 35 ..................................... AAATTTATCAATCTTTTTTTGAATTGATTTTAATT 17400 37 100.0 33 ..................................... ATTTGCAATTGCTGTTGATAATGCTGTTGAATC 17330 37 100.0 39 ..................................... AGCCGATATTGTTGAATCAGCACTTGAATCACGAGTTGT 17254 37 100.0 34 ..................................... ACTTGAGACGGTATCTAGTGAGACTCAGGAGGTA 17183 37 100.0 34 ..................................... AACCTAATGTCTAACACATATAACGCTGAAAGAG 17112 37 100.0 34 ..................................... ATGGCAAAAGAAACAGGCATGACCAGGGATGCCA 17041 37 100.0 39 ..................................... ATGAGATTAAGATACAGCCGCAAACTGAACGGCAGTTAA 16965 37 100.0 42 ..................................... AGTTCCAAAACTTCGGGAGAGAATGAAAGCACTGTTTCCGGG 16886 37 100.0 35 ..................................... TTTAAAATATTATCTAAATCATCATTAGATAATGT 16814 37 100.0 35 ..................................... TGCATCCATAATTCATGCAGATAGAATACGTTTTG 16742 37 100.0 36 ..................................... GTGCAATTGCAGCCAAAGCCGTATGAGAAACTTGGA 16669 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 12 37 100.0 36 GTTACAATTTTTCTTAATCCCTATTAGGGATTGAAAC # Left flank : CTTTTAGCTCGTTTTTTTTCATTCCAAGGATGAAGAGATAAGAGGGATGAAGGAGATGAGGGAGTTTTTTGATTGTTATTTGTGAATTTTGTGTTTTGACGAAACAATCAAATTTAATCTAACATGACTTGGCGATCGCAATAAATATTCTGAATTGTTCGCTGCAAACTTTTGTATCGCTTTTCATGCAACTGCATACCCTCAGGTAAAGTTAGATCGGCGGCTATAGTCAAAAGTGAAAAGACCAGCAAACACCACAAAATTTTTATCCAAATCCGCGGATGGGTAGGTGTAGAAAATCAACCTTTGACAAAAATCTCTGTGTTCCTCTCAGCACATACCTTTCAGGCAAAAATAAATCAAAATCACCCGCGCATCTTGCCCAGAGAGCATTTCAGCGATTTAGTGTCAATCAATTGAAATTTTCTGGTGATACAATTGACCCATCCGCGCAACTGAACCTTGAAAACCAAATACACATTAGCTTTAAGGCTTTGGCG # Right flank : TTGAAATTATTAAGTCAACCATGAAAAATAAAGGCGTTGCTGATTGAAAGTATGAATTACTTTCACACATAGTCAATTAAAAGTTATTTAAGTAATTGTATATTCACCTTGGGCGAGAGCATCTAACTTCGCTCGGTCTAATACCAAAATTTTTCCGCCTCGATGATAGCGGACGCTCGACTGGATTTGCTTGAACAATCTTACACACTCTTCATAGGTAATTCCAATGCTACGAGCAATTTGATAATATGGTAAACGCGATCGCAACAATTCTCCCTGTTCAGTTACTTCCGTTCCTTCTGTAAGTGCTGAGAACTTCAGGTATTGCGCTAAACGCACAATTGCGCGTTCTGAAACTAATCCATGCACCGTTTGATGTAGATGCTGGAGACGCTCTGTCAAAACTGCAATAATCCGCAAAGCCACTTCTGGAGTATGGTGAATCAGTGCTAGTAAAGCAGTACGCTCCAGCATCAGAATTTTGGAGTTCTGCTGTGCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTTTCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 12434-13619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000004.1 Nostoc punctiforme FACHB-252 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 12434 36 100.0 37 .................................... GCTTTGGTATTGAAGTCATTACTTAACCTCCCGCATA 12507 36 100.0 35 .................................... GTTCTTGCGGCGTAGCATCTAAAAATCCCGTCTCT 12578 36 100.0 36 .................................... CCTTGTTACCGGGACGGTTGTCCGGATTCTCAGGAT 12650 36 100.0 35 .................................... GGGTTGTACAACTTGCTGAACCTGCTCTTCCGTTA 12721 36 100.0 34 .................................... CTTTTACGGTCACTTCATAGTTGCGAGTCATAAA 12791 36 100.0 36 .................................... GCCATGGTAATTCATCCTCAAAATTTGCATGGACAA 12863 36 100.0 36 .................................... AAGTAAGCCGAAAACGCCCAGATTCCCGCAATAATC 12935 36 100.0 37 .................................... TCGTTTTGGCTTTTTTAAGACACCCTACTGCAAACTA 13008 36 100.0 31 .................................... TTGACCCCTCCTGCAAATGTGTGCTTAGGTA 13075 36 100.0 38 .................................... AACTCAGTTGCCCATCCTATATTATAAAACCGCAGCTC 13149 36 100.0 35 .................................... TTTATTGTTTCCTCAAACTTTGGAAAGACATTATC 13220 36 100.0 36 .................................... GATCTTCTTCGAGCTGCTCATACAGTTGTTTTACCT 13292 36 94.4 35 ..........C....A.................... GCTTTTGTATGCAAAACATCGAAGTCGAATCCCCA 13363 36 94.4 38 ..........C....A.................... GCACTGCTATCTCCACCATTTAAAGTGTTGGTAGGTGC 13437 36 91.7 34 ..........CA...A.................... TTTCCAGTTATAACGGCGAATTTGAAATGGTGCA 13507 36 94.4 41 ..........C....A.................... TCTTTCATCATACTATCCGCACCAAACATTACTGTTTGACC 13584 36 91.7 0 ..........C....G..........T......... | ========== ====== ====== ====== ==================================== ========================================= ================== 17 36 98.0 36 CTTTACCGATTGCTTTAAATCGGAATGAATGGAAAC # Left flank : ATTGCAGAACTCAAAAAAGCTGAAGCTTTAGCTAAGGAAGTTCCAGGTGTGAAAACGGTGAAGATAGAAGCAAAAATTGAAGCTGTGAAAAAGCAGTAATTAGGTGGTTGATTGTTGATTGTTATCGGTGATAAGAGGTTGTTTTAAAAATCGTTGGCTGTGATTTTACAGCGTTTTTCATCTATTTAAACCACAATCTCTGGTGGGGGCGAACAACCGTTCGCCCCTACAACGTGGTTTATTTACCTGAAAATTGCTGTACAATCATGTGTTGCGATGTGCTGACAATGCACCCTACTAAGGAAGTTTGAAATGTTCATCGACACCACTCGCCGAATGCCCGAAATCCTATATTTTTCGTTAACTGGTGTCGATGCTTTGCAGCGCAAGGATTTGAGCTATGTATTTTACTTAATTTTCCACCGGGTATATAATCTTTTTCAGAGTGGTGTCGATTTAGCGGCTAAAACCCTGACTGGGCAAAGCCTCCTGAACGAACT # Right flank : CCCATGAAAAATAGAAATCCCCGACTTTTTAAAAGAGTCGGGGATTTTTTTAACGGATGATTTAAAACAGCTACTTTCTCAATTTTTTATTGCAAGAAATAATCAGTATTTATCAGTAATTTTTTCAAGAACTTTATCTAAACTTGATATTTTAGAGAAATTGAATCAGTAAAAGCCGTAATTGCTTTCTCTAAAGCAAGTTTGACTTTCTCAAAACAAGCTTTTACTTTCTCATTTTGGTGTTTTCCGCAAGTAAAAGCAGGTTTTATTTTCTCAAACCCCAGTTTACTTTCTCATTTTGGTGTTTTCCGCAAGCAAAAGCAGGTTTTACTTTCTCAAACCCCAGTTTGCTTTCTCATTTTGGTGTTTTCCGCAAGCAAAAGCAAGTTTGACTTTCTCAAACCCCAGTTTGCTTTCTCATTTTGGTGTTTTGTATAAGTCAAATGAACTTGGCAGAACTTGTTTTTCAGCTAATAATTTTCTCAATTTGATGACAGTGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTTTAAATCGGAATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 87982-85863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000005.1 Nostoc punctiforme FACHB-252 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 87981 37 100.0 36 ..................................... ATATTGGGGACTAAATGAGACTATCATCTATGAGGC 87908 37 100.0 35 ..................................... ATCCACAGTATTACTATAACCCTCTAACTTATCAA 87836 37 100.0 34 ..................................... TCCAGGATCTAATAGGGATACCACATCTCGGAAC 87765 37 100.0 32 ..................................... TTTTAGTAGTGCTTTTAGGCTTCCCGCCGCAA 87696 37 100.0 35 ..................................... AACATAAAGTATCAACCCTATTTAGTCCACGTATG 87624 37 100.0 35 ..................................... AAGATAATTTCATTTGGGCAATTTCCAGCCCTGGT 87552 37 100.0 34 ..................................... GCAAACTCAATATTTTCTACGCTTGCTTGACGCA 87481 37 100.0 34 ..................................... GAATTGACGTTTTTCTTTTCAAAGCTAGCTAGTA 87410 37 100.0 35 ..................................... CCCTCTTTTGCGTAGCTTGCCGCCGTAGACATCGA 87338 37 100.0 34 ..................................... AAAAATAAAGACATCCAAAGACAGATGCAACAAG 87267 37 100.0 33 ..................................... GACTTTCCGTAACTGGGCTATAGATTTGCTCAA 87197 37 100.0 34 ..................................... GCATCAAAAACGCTCCTAACCTCTGTGCCGATGG 87126 37 100.0 42 ..................................... GAATACAGTGACTACAACTATGTAGTCATAAAAAGCCCGGAG 87047 37 100.0 35 ..................................... ATCTGTGTAGAGTTCTAAATCTTCGAGATCGGAAA 86975 37 100.0 34 ..................................... GAGAATCTTTATATTAGTTGTTTTTGGCTTGAGA 86904 37 100.0 35 ..................................... TGACCATTGTTACAACCCCATAGCATTCTTGATCT 86832 37 100.0 34 ..................................... GAATTGCTGCTCTAGTTTGCTAGAAAGCCCGATT 86761 37 100.0 35 ..................................... ACAATATGACCTTGCGGCTCGACAGGATTAAGGGG 86689 37 100.0 36 ..................................... AACTCAGTACTGGATTCACTGTGATTCTTACACAAT 86616 37 100.0 35 ..................................... TAAATCCTGATAGTGGTGCAAAGATGGATTAAAGC 86544 37 100.0 37 ..................................... CCCTTGCGGACTTTGTGAATATTACAAGATTTATTGA 86470 37 100.0 34 ..................................... ACTAAAGACGAATTTCTTGATTTAGTTGAAAACT 86399 37 100.0 36 ..................................... TGGCAATATGGTAGTTCAAATAAATTCGGATTATTT 86326 37 100.0 36 ..................................... TACTTGGTACTTTAACTCAAATAACATCCAAATTAA 86253 37 100.0 35 ..................................... TTAGTATTGAATGGATTATTATTATGCATCATCAG 86181 37 100.0 36 ..................................... ATCTAATTCAGTAGTAAGATAATGCGCCGATTCTGA 86108 37 100.0 34 ..................................... AAGTTAATGAATCCTAAAGCCGGATGAATTGGAC 86037 37 100.0 32 ..................................... ATCAGAAAGATTATGGATGCTTTGAAGTAACA 85968 37 100.0 32 ..................................... GAAAAATTTCTCACTAATCATAGTGTAGAAAA 85899 37 97.3 0 ..........................T.......... | ========== ====== ====== ====== ===================================== ========================================== ================== 30 37 99.9 35 ATTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTTGTTGTGTCTTATGATATTTCTGAAGATAAACGCCGTACTAAAATTCACAAAATTCTCAAGTCCTATGGACAATGGGTACAGTACAGTGTATTTGAATGTCATTTGACAGATACTCAGTACGCAAAATTGCGATCGCGTTTAAACAAGTTAATCAAACCCGAAACCGATAGTATCCTTTTTTACTTCTTATGTGCCTGCTGTCTCGGTAAAGTTGAACGTATTGGTGGCGAAAAAATTTGTGATGACTCTATTTTCTTTGCTGAGTGCGCGGATGGGTAGATGTTGAAAACCAAATTGCAGTAAGTAACCTTCAAATCCCTCTGCTGCAAGAGTTTCGGGGAAAATAGCTCAGAAAGTACCCGCGCACCTTACACAGCCTACGTTCTAGCCATTTTCCTCAAACCCAATGTCCATTTCACATGCTATGATTTCCTCATCCGCGCTACCGAACCTTGAAAACCCAATACAAACAATGTTTCAGGCTACCGCC # Right flank : ACAGATGAAACCTAATGTGCAGAGATACTTAATACATGGCTAATAAAACTGAGCAAACCTCTGCGTACCTTTGCGCTGTCCTCCGCGCCCCTCTGCGTTTAAAAAATTATTTCCACACCTCACTTAACTAAAAATCCCTATAAAAAAGAGAGAAATTAAAACTGATTCCTCAATCAAATAGAAATCATCACATTCAATAGTGAAACACCAATATCCAGCATCCAAAATCCGAAGCTGACTATAGTGTTAGGAACTTTTTTTTTAAAGACTTACCTCCTGAAATATCCGAAATTTGTGGTAATTCAGTTCTATTTAATGACTCAACAAAACTCAAACCCAGAGACTTACTAGAAATGCTTTGAGTGTAGCTAGCATTAAGATAACGAATATATTGTGACTTTCCTGCAATATAACTTTGGAAAAAAGGCAAACTTAAAACAGTCATATAACGACGCGCTTGGGAAGCATCGCCAATCATATCAGCAGGTAATGATACTTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 13440-13609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000050.1 Nostoc punctiforme FACHB-252 contig50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 13440 24 100.0 47 ........................ TGTTGGATCATGCTCCTGTGTTTCGCCTTCTCTAACTTTCCAATCCC 13511 24 100.0 50 ........................ ACGTAGTCAAAAGCTTGCCCAATTGGTGCATTCTGACTCTTTCCAATACG 13585 24 79.2 0 ..................ATTCG. | C [13602] ========== ====== ====== ====== ======================== ================================================== ================== 3 24 93.1 48 TCTTCCCCTAACGGGGATGGAAAC # Left flank : GGCTGAGTAAAACTACTAGGAACATTTCCATGATTTCGGAAAAAGTCTGCTATATAAAGGTATTGTGAAGATAGCGATAAATAGAGGCTGTATGTAGACGTTTATACTTAGTCTCAGGTTCCGCGTTGGCTCTGACACTTTTATGACTAGTTACTGAATACCTCAAGTTTTTGTGTGTTCAGCCTTTGAGTCGATGTCGTTTAACTCCCATTTCCCGACATTTACCCCCTACCGTTAACTTATTTATCCACTACTTGACAGCTAGGAGTAGCACACTATACTCTGTTCCCTAGTGTGTCAAACTCATCGACACCACTCGCCAGAACCTTGAAAACCTCATAACTACGTTGACTGGTGTCGATTGCTTACACCGCCTGAGTTTCAGCCTTCTAAATGGGTCTACTTTTTATTTTCTTTGGTTAAATAAAAAAGTGGTGTCGAAATGGGTGTCTCAAACCCTCTTCCTGTAAGGCTTCCAGATGTGAACTCTTTCCAATCCC # Right flank : CATCAATTTCTAGCTTTTCATCAAGCCCCAGTTCTACACCAGTTCTACCCACAGGTGACAGCATCGCCAAGCTGGCTGCTGCACCTAACACCTGCTGATCTGACACTTCCAAATATTTCTGCAACTGTTCTAGGTTGCGATGCCCACTAATTTCTTGAATTACCCTGAGTGGAATACCTGCATTACTCATCTGGGTTAGTGCGGTACGCCTGAAGCTGTGCGTCGATACGCCGATTATTCCCACCTGTTTGCAAGCTCCGCGCAGTATCCTAGCGGCTGAGTCTTCACTGATGTGTCCCGAACTGCGACCGGGGAATAAATAGGGATTACCTGCTAGTGGGTAGTAGTTGGTTAGTATCTGCCGCAGGTCTTCAATCACTGGGATTGAGCGTGTGGCCAGTTTACCTTTAGTGTTCGCTTTTCTAATAATTAGCTGGGGTCTGACTAACCCTTTGGGGGTGTAGATGTCTTCTGTTAGCAGGGTGCAAGCTTCGCGGATT # Questionable array : NO Score: 4.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.19, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCCCCTAACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 27495-26135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000048.1 Nostoc punctiforme FACHB-252 contig48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 27494 37 100.0 35 ..................................... TTATCGGGAATATGTTGAGCATCATAGGACTCAAA 27422 37 100.0 38 ..................................... TTATACGATTATTTCCTTAAAAGGGATAGAAGGATAAA 27347 37 100.0 34 ..................................... CGATAACACAATTGGTCATGTTTGGCTCTCACCA 27276 37 100.0 34 ..................................... ATCCAGATGCCCAGTTGATTGGCTGGGAGTATCA 27205 37 100.0 34 ..................................... TTGACCTAACAGCATTGATTAAATCTTCAGTAGA 27134 37 100.0 37 ..................................... GTGGAGCCATTTTACCCACTGCCTTTAATATTAGAAA 27060 37 100.0 35 ..................................... GCGCGGAACTGGGCTTAATTGTCGCCAATCTCCAT 26988 37 100.0 37 ..................................... TAGAAGTTGGAGAATCAGCACCTCCATATTTAATAGA 26914 37 100.0 34 ..................................... TTTGATGTTGGAAATAAATTAACTTCATGGCTAA 26843 37 97.3 34 ..................T.................. CTTTCTTTGTTGTTGGCAAGCAGTATTGTATAAA 26772 37 100.0 38 ..................................... TTTGTTTCCAAAATACGACTTTGGTGAGGAGTTCATAT 26697 37 97.3 39 .........................T........... CAGCACCACAGTTTAAAAGCATTAAAGATACTGCGATGG 26621 37 100.0 38 ..................................... CAAACTAGAAAATTCCTGATGGGGCGATGGAAAGATTC 26546 37 100.0 38 ..................................... ATTTTCCCATCTACCACGAAGATTAGTTGTCTTGCCAA 26471 37 100.0 37 ..................................... AGCTGTTTCTGCCATCTGAGCGCAAAAAACAGGGTTC 26397 37 100.0 35 ..................................... TAAAACCCTTGCCCATGACTTCCCCTCCAAAAAAA 26325 37 100.0 42 ..................................... CATCAAAAATATCCTGGATGAAGTTATCAGCGACAAAGTTTA 26246 37 100.0 38 ..................................... TAATTTGTTTAGGTTTCCTGTTTTTGGTTTTGTTGCTT 26171 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 19 37 99.7 37 CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : CATAAAATGCTTTGTGGTTACGGAACTTGGACGCAATACAGTGTATTTGAATGTTTTTTGACTGCCGTACAATTTGCGAAACTCAAGGTGCAAGTTGAAAAGTTGATTAAACCAGCCGAAGATTCAGTGCGTATCTATGTGTTGGATGCTGGCGCAGTGCGTAAGACTATTACCTACGGTTCCGAACAACCTCGACAACAGGAGACGATAATATTATGATGTTTGACTGTTGAGTGTTGAGTGTTGATTGACAACTTCCACAACAGGAGACAATAATATTATGATGCTAATACAATACTAGTAAAGTTTTTTTGGCAGGGGAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCGTCGGAACCTTGACAATTCAATATTTTCAGCGTTTTGAATTCTGTTGAGTTCGCTGTTTACAACGGCTGAAATCGACTTTGAAAACACTCCCGCCAAATTTGCTTCTAGAACTTGGCCTATAACTACGTTCTGGCTGGCGGA # Right flank : AGCTATGGCAGATATAACAAACCACAGGACAAACTTTCAATTTCAATGAAACCCGATCGCTCTATTACAACCAAAAATCTCAACACTAGGCAAAATAGAACTGAAAACGGTTTTCAAATCATCATAATTAAAAATTCCCATGCTTCAAAGTCAGCGTTTATCATAAATAAAAAAATTATTTATTATGAATGCTGAAGATTTTTTCCACCAAGGATTAAACAAAAATTTGCAAGGGGAATACCAAGCAGCCGTTACAGCCTACACCCAAGCAATTAACCTCAATCCAAATTACGCCGAAGCATACCATAATCGAGGAATTATTTCAAGTAGTCTTACAGATTATCACAGTGCGATCGCCAATTTTAATCGCGCCATTGAAATCAATCCCAATTTTGCCACAGCCTACTATCACCGCGCTAATGCACGCTACTTTTTAGGAGATTACGAACAAGCCATCGCTGACCATAACCAAGCATTGGCAATTGACCCGAATCTCGCCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 322550-323534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000008.1 Nostoc punctiforme FACHB-252 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 322550 35 100.0 37 ................................... GATAGTTAATACGTATTGATCAGTCTCATTTAAAGAG 322622 35 100.0 41 ................................... TTTCCTGATTCGCCTCCTGGATCAGCTTTTCAAGGGCTGAA 322698 35 100.0 40 ................................... AAGAAATATTTTTCTCCAAAGCACTAGGGCTTTGAAAAAC 322773 35 100.0 38 ................................... ATTATTGTTCCAGCAGAAAAGACACCTGCACCCAAGAG 322846 35 100.0 39 ................................... CATCATCAATTAATTCCTGTCCAGCATTCGCTGGCAAAA 322920 35 100.0 36 ................................... CTGACCTGGCTGCTGCCATAACCATTGCAAGATTTA 322991 35 100.0 40 ................................... AAGTACTTCGGTCGAAAATCAAAATCCCAATTTTCATCCG 323066 35 100.0 37 ................................... AGAAAGAAACAATTCCACCAACAAGTGACGCAGAAGA 323138 35 100.0 36 ................................... CGTGTCAAGAAACCATTTAGAAGAGTGGTTAATAAA 323209 35 100.0 41 ................................... TGCATGTATATGCACTCCTGGTTTTTCAAAGGGTTCTTCCA 323285 35 100.0 37 ................................... TTTTTGTCGCTGCTAAAACACTAGTATGTGTTACAAT 323357 35 100.0 36 ................................... AAGCTTAAAGACTTGGGTTTCGGGTATAGTTTCAAG 323428 35 100.0 37 ................................... AGTTGCATCTCTTTGTGAGGAGAAATATAATATTCCG 323500 35 94.3 0 .............T....................T | ========== ====== ====== ====== =================================== ========================================= ================== 14 35 99.6 38 CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GGTGAGGCAGCGCGGTCTTGGGGGTTTCCCCCATGAGCGACTGCCGACGCAGAGATTTGTACCTCAGCAGACTAGGAAACGCTATAAGAAAGCCTATCCCAATAAAAAAGTTGAAGGTTTATTCAACGGCAAGCCACTCTAATCTATTAGAATTGATGCGATAATCAATAGAATTAGCCCTCGCAAAACTGCTAGGGCTGTTTGAATGTTGTGAAAAATTGCCAAGCCAAAGAAAGTAGTGATTTTTAAGATGGATCTATCGTCCTTTGACTTGGAAAAAATAGTTCGGATAATGTAAAGAAATGTAAATTTGCGGGGGGTAGGCAATGGCTGAAACCCTTATTCTATCGTTGACCCCCGCAAATCCTTTCTGGGTAAGGGTTTGAGGGTTTTTATCTGGTATTTATTGCGAGTAATTCCTATTTATTGGAGCAATATCTTGACCCCCGCAAAAATGAGGGTGTACAATCCAGTAATGGTAAGCCTTCTATAAGGCTACC # Right flank : TGTAAAAATATTTCTAAAACAAGATACCCAACTTTTTTTAAGTCAGGTATCTTTTTTCAGGAATATAGGACAATACGTTTATTTAAGGTTTATTGGTAAAAAACTGGTTTTTTAGACGCGATGAATCGCGTCTCTACATGAATAATTTTATGCTTAACTGAATTGTATTAGTATATAGGACTTATGCATTAAGCAGATATCATATTATTTTGCAATACAACAGGGTACGATCGCATCTGTACCAGACTGAGCTAAATCGCCTTGTTTGAGTAGCTCGATCCAAGCCGATATAATTTTTGGATCTTTGTCTTTGGTATTTTGTAAATTTTCTCCTAAAGTTGTCAAGGCATCATACCAAAGACCATGTTTTGCAAAAAAACTAGCTTTTTCCAATGGGGTTTTAGCGGCTGCAAGTTGTTGTGATGATGCATTGAGAGTCACTTGTGTGATTGAACCTTGGACGTAAACAGCAGCAGATGGTTTGTCAGGCTCGCAATAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 204603-204201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000006.1 Nostoc punctiforme FACHB-252 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 204602 37 86.8 35 T...............-.....G..A...........G TCTGATAGCTTGGCTTTGTGCTGCCAAAGATAACT 204530 38 100.0 33 ...................................... TTTGCGATCGCCGTTCTTGGTTTTCTTAGAGCG 204459 38 94.7 35 ........................A.A........... ATTATTCAACTTGGGACGAGGCTCCAGCCGGACAC 204386 38 94.7 36 ..........A.............A............. CCAGTTTCACAACTAAAATCGTCTCTTAATTTATAG 204312 38 100.0 36 ...................................... ACAAGAAATTACCGAAAAACCCGGACGATTCGTACT 204238 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 6 38 96.0 35 CTTTCAACCCGCCTCAAGCTGTAAGGGGTATTGAAACT # Left flank : GCTTTAGCGAAACTTTGCCCTTTGCGGTAGCGTCTCTGAAAGAGAAGGCATCACCAGTTGCAAAAAAGTGTGTATTTTAGTCAATTGAAAACAGCTATAAATAATGATATGCTGTACAGTAATATTAAAGTTTTGGCTAAAAGCTGCTAGCGGGTGTAATTCAGTGGTAGAATGTCACCTTCCCAAGGTGAACGTCGTGGGTTCGAGTCCCATCGCCCGCTTTAAAATACTGTCGATTGTCAAATTATTTGTCCGCGTTGACAAATTAATGTCCGTATTGACAAATTCTTGTCCTCTTCAATAACAAATTTGCCTTCTTTAATTCTATGCTGAACCTGAATTTAGGAACGCAATTTTAACTCAGTTTCTAGAAGCATAGAAATTGGGAAGGTGACATTCCTTTCAACCCACCTTTTTATTTTGAAACTTTATATAGTAGAGTTTGTCTCAACTAGCTCTTCGTTAATGACACTTCGCTAGTGCGAAAAAAGTTTATCCAC # Right flank : CCAGCGCCTCAAATCCTTTACTAGCAAAAACTCCATAAACATTTTTGTCAGATTGCCAAAATCGCCTGTCACTTAACACTTAAAAAAGTAAATTAATTGACATCATAAAAGCTACAAGCCTTAATGAATAACCGATTTGAAGTTTTGACAGATCCCCAGGGAAATTGACCCCGCTTCGATTCGCCAAAAAATAATTAAGGTGGGTTCCTCCTTGGTCGGAGGTGATTCAGTAGCCACCACTGCGGTAGACCCGCACCTCTATTACTGGGGGCGCACCTAATTCCTATCCACAAGGGATAGCAGCATCAAGGTGGGCAGCTACTAGGGTCAGAAAGCAAGACTGTTTGACAACAGTCAAACTAACCCACATTTTCACAGTACAGCGGCTTTATACAAGCATGAACTGCGGCGCTATTATTTATATTTATTCTATTTTCAAGGTTCGGTGTTTTGTCAATTAGGTTTTTTGGCGAGAATAGTAAGCTGCGATCGCTAATTCT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGCTGTAAGGGGTATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 11864-14268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000018.1 Nostoc punctiforme FACHB-252 contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 11864 37 100.0 45 ..................................... GTGGAGATGGACTTCCTTGTTGCAACGGGGGTGTTACCGTGCTGG 11946 37 100.0 40 ..................................... GATTAGAAGCTACCGCTCTTGTGGGAAGTTCGAGCGATTG 12023 37 100.0 33 ..................................... TACAATTGATGAGTCATGATTCAAATCTCTTTT 12093 37 100.0 39 ..................................... ACATTCCAAAAGCCGAACTCTGGAGGATAGAGGACGCAA 12169 37 100.0 39 ..................................... AGTCCATCCTATTGTTTCTAAATATTTTGTGTATTCTTT 12245 37 100.0 36 ..................................... TCATAATTGAATCCCCAGTTTTTCTTTTGCGTAGTC 12318 37 100.0 38 ..................................... GGAATTTCCTATCATCAGCAAGCAACATGGGACGCGAT 12393 37 100.0 37 ..................................... ATTACTTTGATTGTTTAGATTCCCGTTTTAACAATGG 12467 37 100.0 38 ..................................... CAAACCTTCCTCCAACCATCCAATTCCACCACTTCCTA 12542 37 100.0 33 ..................................... TTTTGGATGTAGCTGAAGCACGGATGGCTAAAT 12612 37 100.0 36 ..................................... TTGAGACTCATAGGATGGCTCCAAAAACAATTCCAA 12685 37 100.0 34 ..................................... CAGGGAATTGCGGAGGAGGCTGCATGAATTTCTC 12756 37 100.0 39 ..................................... TTGAAGGGCAAGACAGGCTACAGAGAAGTGTATCCTTAT 12832 37 100.0 36 ..................................... TTGTCTATTTTTACGTCTACCTTCAATCAATGGGTT 12905 37 100.0 39 ..................................... ATGATGTTGCATGTTTTTTAAATATTTGACTCATTTGAA 12981 37 100.0 34 ..................................... ATCCAAGAGGGTTATAAGTTAGTTGACCCTGAAA 13052 37 100.0 37 ..................................... AGGATATTTAATAGAATCTTTGCCACCGATAAATTGC 13126 37 100.0 36 ..................................... AAGATATACAGGATTACTTGGATTATCCAACACAAA 13199 37 100.0 40 ..................................... CGATTGAGTTCAGCTTGCCTGTAGATGCGGAACTCTCCAG 13276 37 100.0 37 ..................................... TCAAAATTTTGGCTTTTGATAGTTCATTAAGAGCAAG 13350 37 100.0 37 ..................................... GTGCAAGCATTTTGGGTATAGACTTGACAACTGGAAG 13424 37 100.0 39 ..................................... CAAACTTGAGCAAAAAAAGAAGAACATACCATCACTTTT 13500 37 100.0 37 ..................................... TTGGCGTTGCTTGCCGCCGTAGGCATCGCTCCTAAAC 13574 37 100.0 37 ..................................... ATGCCCTTGATTGGAGAGTCGCCACCGTCGCTCTCCA 13648 37 100.0 34 ..................................... ACTTATTGGCTGGCTGCGATCGCCATAAATCCGC 13719 37 100.0 39 ..................................... ATTCAACTAATTTTAGAAAGCCTGGAAATGGAATGTTAA 13795 37 100.0 34 ..................................... CTTGCAGGACAACACAACCAGGCGGCTGTATGAG 13866 37 100.0 35 ..................................... AGTTGTTTGATTTTCGCCAAACTCCCCCCTTTATT 13938 37 100.0 34 ..................................... GAATCCCACTCAGAGCGAAGCTGGTTTAGTTTCG 14009 37 100.0 37 ..................................... ATCCTGATGTCAGGTTTGAACTACGATCACAAAAAAG 14083 37 100.0 38 ..................................... GCGTAAGTGGCGGTCAAGCTGGTACACCGGGGAGTTGG 14158 37 100.0 37 ..................................... ATGGTTCTTCACCCACCACTGCTTCATAAACAGATTT 14232 37 97.3 0 ......................T.............. | ========== ====== ====== ====== ===================================== ============================================= ================== 33 37 99.9 37 CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : GCGATGACAAAGGACAAACACATCCCGATGGTGGCTGAAGCTTGGGAGCCTTTTGAGCAACAAGACATTCAGCAATACACCCAAGCGGACAATTCTCAACTCCTGGGTTGAGTTGAGAGTAAAGAAGTTGTAAAAAAAGCTTCACCTGACTTACCCTGTGTTCTTTGCACCCAGTTTAGTACTGGTTTCGGGAATGTTGGCATCAAAAATTGATATCAATGCTTTTTCTTTGCTTGAATGTAGATAATTTTTGTAAAGTTAGATTTTGTGGAATTGGGAAAATGAGCTTATAATCTGAACCAAGTTAATTTTTGGCAGGGGAAAGCACGGGCGAAAACCCCCCACCTCCCGCCAAATCCACAGAACCTTGACAATTCAATACTTTCAGCCTTTTGAGTATTGCTGAGTTCGCTGTTTGCAACGGCTGAAATGGACTTTTAAAACAGTCCTGCCAAATTTACTTCTAGAACTTGGTTTATAACTAGGTTCTGGCTGGCGGA # Right flank : CAAAATAAAGAGTGCTAGATTTTCACTTAGCACTCTCAAGATTTTTAATTTATCTACTATTTTTGACCTTGATTAACTCTCTTTTCCAATTCAGCTTCAGCCTCTTCAATCGACATTAGTCTTGGATTTGGATTAGCCGCGTGCAAGCGATCGACATAAGCATGAAAAGCTTCAGTATTTTCCGGATTTTGCAATACGTAAGCTCGTAATTCAGCATCCGTCATGTTTGCAAAATTGGGCTGTGTCATTTTGTAACCACCTCCCCGTTAGGATAAATTTCTATCTCTATTGTCTCTCCGACTAACATTACTATGCGTTTTGTCCTTTCGTTTATTCGCACTAGATTTATTGGTCGCAGCAGATTGCTCATTCTGACCGACATACGGTAGAAGGATTTCAACTGCTCTGGCGTTGGCTCCATCTCACCTCCTTTATTATTCAGAATTTTTTCAAATCTCTTACCCTAAGCCTTCTGGGGTTTTGTATTTTCCCATAACTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 288408-288256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTC010000009.1 Nostoc punctiforme FACHB-252 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 288407 26 100.0 43 .......................... CCTTTTCCCCAAGATTAGAGGTTCTGTCTAGATTCATTAAATC 288338 26 96.2 31 ........A................. CCTTTCCCCTTTTCCCCTTCCCCTTTCCCCT 288281 26 96.2 0 ..C....................... | ========== ====== ====== ====== ========================== =========================================== ================== 3 26 97.5 38 TTTCCCGACTTCTCTTAGAAGTCTAT # Left flank : TAGATATTTAACCTAATTTAAATACCAAGTGATGTTTTTATAGCTTGCACATCATCTTCTAATGTTGTTGAATCCATTCCTTCGTATTGGTAAATGGCAATAGTGGCGCTGATAAACCATTTAAAAACTTGGATGGAAACAAAATAATCAATACTTAAATCATTGAGAATTATTAAATTGAACTTGCCTAAAAATAACTGCTCAGGTTCGCCAACAAAACTTGCACCTAGCCCAGTTGTTAGGCTGCGGCGTAAATATCCTGCATACTTCCAAATCTTGCCAACAGGAATAGTAGTATTGACAGACACAGCAATAATAGGTTTATCAAACACTACAGGGGAAAAGGGGAAAGGGGAAAGGGGAAAGGGGAAAAGGGGAAAGGGGAAAGGGGAAAGGTTTCAAATACATCAGACCTGTTGCACAAGAGTGCTTTTTGGACTCTTGTGGTCAAAGGGATACATCTTTATTGGGGAAAGGGAAAATACCAAACATGCACCCCC # Right flank : TAAGTAGAGGGGTTGTTGTTGACCGTTGGGGAAACTCCAAGACCGCAGTGGTTCTGGTTTACAGTCAACAGTCAACTATCAACAATCAACAATTTTCAGTTTCATTACCTGACTACCGCTTCAGTTTTTTCCTTAACTGGTACATAGGGCTTTTCTTCACCCTGCGCCAGATATTCTGCTAACTGACTTTCAATTTGGTCGCGCACAATTTGGCGATACTCTAGAAAATGTTCGTTGTGGGCACAAGCGGCGAGGTAATGCTCAAAAACTTTGGGGTTACGTTTGAGAATACTAAATAAATGATGCCAGAATTTCCAACGGGTTTCGCGTTTGATTCCTTGTCGCCAAATCACAAGTAACAAGGCTTTCACAACTACCCACTCTGGCGTTTTGGCTGGTGCTTTCCAAGTGGGCGAACCCATCATCAAGAAGCAGCGGTAAGTACGATCCAAATATTTAACTGGGTCGTATAAAGTACAAAACGCCTCAATATATTCTCT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCCGACTTCTCTTAGAAGTCTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //