Array 1 60-818 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSIR01000024.1 Neisseria mucosa strain CCH7-A10 CCH7-A10_contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 60 33 90.9 31 .G...T.......G................... CGTCGCCGTCAGTTTGCCGTTTTCGTCTGCG 124 33 93.9 33 .....T.......G................... AACAGCCATTAGTTTCCATTCCTTCGGTTAGCC 190 33 100.0 33 ................................. AGGTAAGACCAATCTAGGGCTGCGTCGTAAGCT 256 33 100.0 34 ................................. GTGATCGCCGCTCGCGCGCCGGACGGGATTTGGA 323 33 93.9 33 A.....................G.......... CTTGTATTTGGCAATTAAAGTTTTCATTACTTA 389 33 97.0 34 A................................ CCATCTGGAACAGCAGCTAATGAGGTGTTAAGTC 456 33 97.0 33 G................................ CTTGAGCTTTTTCAGCAGACTTGTCAGCGCGGA 522 33 100.0 33 ................................. GGTCAAGGCTTATGAAAAAGGTATCGTTGCCGT 588 33 100.0 34 ................................. AGGCACTACAGTAGTCAATCAACATGATTACTCA 655 33 90.9 32 G.....T.........................T AGACGACCTCTACCGTACTGGCGATTGATTTT 720 33 84.8 33 G.T.............T.A...C.......... CCGTAGCCGAGGGAGCAGAGGTAGAGGCGCAGG 786 33 69.7 0 .......AT......CTAA.CA.A...C..... | ========== ====== ====== ====== ================================= ================================== ================== 12 33 93.2 33 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TTTTTCTGTTCATGCCGATAGTTTACAGCAGAGACTGAGACAATGAACACGTTCTAAGGC # Right flank : CCAGACTGTGTTTTCCTGATTTAAACCATCTGTAACCATTTACTTTTTGATGGTTATGTCTGAAAAATCATCTGTTGGAATAGGAAATCGTTAATCCATCAAATCTCTGTTTTTCAGACGACTGTAATTGGATTTGTTTGGTTCTAATTAAATCAGATTTTTCCAGCTTCGGGCTGCCGGATAAATTTGATGCAATACAGGGTTTGATTAGCTAGGGGCTGGATAAAAACGGCAGCTTTGTTATAATAAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCCCACTTCGCCCGTCTGTTTGACGAGCATAATGAGTTGGACGATAAGATTACAGGTTTGGTTAATAATCCTGTTACCAGCGGTTCTGAAGAAATTGAGGAGCTGAAAAAAGCCAAATTGAAACTGAAAGAC # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3997-83 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSIR01000109.1 Neisseria mucosa strain CCH7-A10 CCH7-A10_contig109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 3996 33 93.9 32 CT............................... CATGCGGTAAAGTAAGTACATTGCGATGGGGG 3931 33 97.0 33 C................................ AGTTCGGTGGTGAGGTCATCAGCCTGCCAGTCA 3865 33 97.0 31 .C............................... CATTTTTCAAACCTGAAGGAGGACAGCCTCG 3801 33 93.9 34 GC............................... TTACCATGATTCCAATGAATGGAATGACCTCCTA 3734 33 93.9 32 GA............................... AATCTAGTAGCTGACAGCTCTTAAACTGGAGC 3669 33 93.9 32 TA............................... ACAATAAGAAAAGGAAACATCATGCCATATCT 3604 33 93.9 32 GA............................... TTTTTGAGGACGGCGAGACCCGCCGCGAAACC 3539 33 97.0 34 C................................ CCGAAAATCGGCTAAAGCGGAAGAACAGGCATTT 3472 33 100.0 33 ................................. ATACGATGTTAGTTGAGGCTGGAGCGATGAAGG 3406 33 97.0 33 .T............................... AGTACGGTTTTGCTGTTCAAGTGGCGCAGAAGA 3340 33 100.0 34 ................................. TTTATTAAGGACGGTGTGTTGTCAGGTAGTTCGA 3273 33 97.0 32 T................................ ATATCTTGGATACGTTCCCTATCAATAAACAT 3208 33 93.9 32 GC............................... CATGCTTTTGAACAAGACTATGTCGAAACGGA 3143 33 97.0 33 .C............................... TAAATGGCTGACACTACTTGATAATATCATCCA 3077 33 97.0 33 .C............................... TTTGCTGGTCAGGTGCTGCATCGCGTCCATCAC 3011 33 93.9 32 TT............................... CACAGAAGATGCAGAAAAATGGAGCACGTACC 2946 33 93.9 34 TT............................... TCGTCGAACGGGTGGCACAACTCCGCCATACCCG 2879 33 93.9 32 CA............................... AAAGACACGCATTTGCGGTTCGACTCCGATGA 2814 33 100.0 32 ................................. ACTGCAGCAATATGATGGGCAGTACCACGATA 2749 33 93.9 31 TC............................... TGTGTGGTCGGTTGTTGGGCAGACAGCCTGT 2685 33 93.9 33 CC............................... GATTATTGCGTGAGCGGTAAACCAACTCATCCG 2619 33 93.9 32 CC............................... TTACCGATAATTATGGCGTATCTGAAGAAGAC 2554 33 93.9 32 GT............................... CGGCTCTTGCTTAGGCTCTCTTTTTTTAAAAA 2489 33 100.0 33 ................................. GGATTTGAAATCTGCATGGGCGCAGTGGTAACA 2423 33 97.0 34 G................................ TACGCAATTCGCGATAGGCAGTGATGGCCGTCTG 2356 33 97.0 32 .A............................... CCCGCATTTGCAGAATGTTTTACGGGTTGCAC 2291 33 93.9 33 CC............................... AGAAATGCGGATGTTTCCAAATGGTCAGCATGA 2225 33 97.0 35 C................................ GAGACGACCTTGCGAAAACACTGCCGCGCTGTTGG 2157 33 93.9 34 TC............................... GATAACCAACCGCAACACGTCGTAGTTATCAGCA 2090 33 100.0 34 ................................. CCCTGAATTGCGAGGAAACGATTCAGGTAAGACG 2023 33 100.0 32 ................................. ATATGCAACATCATCATAATCACGCAAAATGT 1958 33 97.0 33 C................................ AAATTTTTGGCTGACGGAAACGTCATGCCGAAA 1892 33 97.0 33 .C............................... TACACGTCATCCATGCGCCGCGAGTTACTTAAA 1826 33 97.0 32 G................................ GCGCTCCCCCTGTTCAACTGGGCAACCAATAC 1761 33 93.9 33 GA............................... TTATTGCCGCACGACCGTCAATGGGTAAGACGG 1695 33 97.0 34 T................................ TTTGATTACAGACGCGACGCGTACTGTCGGCTCA 1628 33 97.0 34 .A............................... AAGACGGCAATGTCGATGATTTCAGACGGCCTGC 1561 33 97.0 34 C................................ TAATTTGGGATCAAAAACCACCATGCTGTCGCGG 1494 33 93.9 32 TA............................... CCTCGTAAATCAAGGCGGCGACACCTTTAACG 1429 33 93.9 33 GT............................... TCCAACGCAATACGCGTGTTTGCGTTGACTTGT 1363 33 97.0 33 T................................ ATAGCCTGATACCCTGATGGCCTCGACACCGCA 1297 33 93.9 33 GA............................... TAATAAAAAAGTCCCTATGGCAAGCAGGGTATG 1231 33 93.9 33 TC............................... ATTTAAGTCAGTTAACAACAATATTCTGTAATC 1165 33 93.9 32 .C...............A............... AGCCGTGCTTTTTTCGTTTTTGATGTTTGGAT 1100 33 97.0 32 T................................ AAATTTAATTTCAATCGGACTTCCGTTCATCG 1035 33 93.9 31 .C................A.............. ATCGCAATGCCCCCTCAATGGATTTTTGCAA 971 33 97.0 32 .T............................... TTCCCTACAGCCCAAAATGACTCGGGTTATAC 906 33 93.9 31 CC............................... TACATCGAAATATCGCAAATCCGCCGCATTG 842 33 93.9 32 GT............................... TCCAAGCTGCCGCGCAACAGCGCACCGGCATT 777 33 97.0 32 .A............................... TCATTTCCAATAGCCTAAACAGGTCCGCATTG 712 33 97.0 34 G................................ GTTTTACTTAGCCCCCCTTGGGCTTTGTTAAGCG 645 33 93.9 35 GT............................... ACCTATATGGAAACAGTACCGCCGGTAAAACCACC 577 33 100.0 33 ................................. ATACTCATCCCCCCACTTATTGCCTTGCTCGGT 511 33 97.0 33 C................................ AGTTTGTCAGGCGACTGGAAGAACGCAATGGCT 445 33 93.9 33 TC............................... AGGGCTGGCAGAAACAGGAAAACCCGCCAATTG 379 33 97.0 33 .C............................... ACTCGGTGCAGGGCTGGACGACGGCTTAATGCC 313 33 93.9 33 CA............................... TGCGAGACTGGGGCGGTCCCAACCTTGGTCAAT 247 33 97.0 33 .C............................... ACTACCGCAATCTCCGTTTTCGAGTAACGCGGC 181 33 97.0 33 G................................ TTCAGCAATGCTTTTTGCGAGCTTGGATACCTG 115 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 60 33 96.0 33 AGCAGTCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGCACATGGGAATACAAAATGCTGATGCTGATTACTTATGATATTTCGCTGGAAGACGCGGAAGGACCGGCAAGGCTGCGGCGCGTGGCAAAGTTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCACCCGACCAGTGGGTTGTTTTAAAAGATAAACTTTTGAAAACCTACAACCCTGAAGCCGACAGCCTGCGCTTTTACCATTTAGGTAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCAGCGGTGGATGTGTTCAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAAGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGAGAGTTTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGG # Right flank : CATTAACAGATAAATAAGCATCTTTATCTAAGAGTGTGTTCATAGTCTTCGTAGCAGGACTCCCAAGAAAGCCAAAGCTACCA # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCAGTCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //