Array 1 600-1347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGO010000002.1 Pseudomonas aeruginosa strain LYON07 ctg_LYON07_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 600 28 100.0 32 ............................ GTATCGCGGCGAGCCATTGGGTGACGCGCTGG 660 28 100.0 32 ............................ GCAGCGATCAACGGCCATATCTACGAGCTGGA 720 28 100.0 32 ............................ CTGACCCGCCGCATGGTGCTGGGCCTGCAGGA 780 28 100.0 32 ............................ TGCCAGCGGGCGGTATGCGCCTGCGGAGCTTC 840 28 100.0 32 ............................ TCGATCAGCTTCGCGGCGCGGGCGGTGTATTC 900 28 100.0 32 ............................ ATGTACGAAGTGCAACGCAATACCTACGTCCC 960 28 100.0 32 ............................ TTAGCGGTCCGTCCTCGGTGACGGGGCCTAAG 1020 28 100.0 32 ............................ AGGAACGGCGTGCCCTTTTCGTTGGAGATCGT 1080 28 100.0 32 ............................ TAGCGATCGTCAGGCAGTACCTGGTGCAGTTC 1140 28 100.0 32 ............................ TGGTAGCGCTTCGGCTTGTCCGGCCCATCGGG 1200 28 100.0 32 ............................ ACGAGGCATGGTTGAATCGCCCACAGGGCGGC 1260 28 100.0 32 ............................ TTCAGCTTCTGCTTCAGCCGCGGATCGCTGAT 1320 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAGGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCTAGCCGAGAGGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGTCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACGGCGTCCCCCATCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 189588-190156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGO010000011.1 Pseudomonas aeruginosa strain LYON07 ctg_LYON07_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 189588 28 100.0 32 ............................ ATGATCGACCCAGCAGACAAGCAAACCCAAGC 189648 28 100.0 32 ............................ TTTCAGGGCACGCCTTATCTCGGCCTGATCTT 189708 28 100.0 33 ............................ ATCCCGCAAAGCCCCGCAGGACAATGCCTTGAT 189769 28 100.0 32 ............................ GAGGTCCAGGAGCTACGCCGCCAGGCCTATCG 189829 28 100.0 32 ............................ TGTCTCCGGCTAAATGTCCGCCGCCCTGGAAT 189889 28 100.0 32 ............................ TCGCCGCCCTCCATGGTCTGGCTCAGTTGGCC 189949 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 190009 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 190069 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 190129 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCTGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAAAAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 199729-198681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGO010000011.1 Pseudomonas aeruginosa strain LYON07 ctg_LYON07_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 199728 28 100.0 32 ............................ AAGGCTTGGCGGCGACCTGGCCGAGCCGATAC 199668 28 100.0 32 ............................ AATCGAAAACATCAGCGTCACAATCAATGCAC 199608 28 100.0 32 ............................ AGTCCGACGTGGTGGCGTCCTGGTCCATAGCC 199548 28 100.0 32 ............................ TGAAGAAGTCGTACACCGGCCTGACCGGCACG 199488 28 100.0 32 ............................ GTCAAGCAAGCCAAAGCACTCTACGACGCCGG 199428 28 100.0 32 ............................ AGTACCACCGCCCTCCCCTGAGCCGTCACCAC 199368 28 100.0 32 ............................ ACTCGAAGAACTTCACAACCGCAGAAGTCATC 199308 28 100.0 32 ............................ TTTTCCTACGGAGCAGGGCGATGCTGGTTATT 199248 28 100.0 32 ............................ AAAGCGGGCATGACGTTCAACCCCAACAGCCG 199188 28 100.0 32 ............................ GCGACGAGCCGGAGAACCGCAAGACCTTGGGC 199128 28 100.0 32 ............................ TCGGGACGATCTCCAGCAGGCGGATCAACTGG 199068 28 100.0 32 ............................ CCGGAATCATCTCGCCGGCCGTCTTCGTACTC 199008 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 198948 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 198888 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 198828 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 198768 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 198708 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7444-5952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGO010000048.1 Pseudomonas aeruginosa strain LYON07 ctg_LYON07_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 7443 28 93.3 35 ......--...................... GAGATCGAGTCGGACAAGGCCGAGCGCTGGGAAGT 7380 30 100.0 37 .............................. ACCAGTTGCCTAGCCGTCATCACGGGTTTGCTGATGT 7313 30 100.0 36 .............................. GAAATCTGGCGCGTCGAGTGGCAGCAAATCGTGCGT 7247 30 100.0 37 .............................. CAAATATTTGAGCCTGGACAGAATGTAAGTGGACAGT 7180 30 100.0 37 .............................. AGCCAGAACCTGGTGCGCTGCCGCGCCGTGAATATGT 7113 30 100.0 37 .............................. CGCATGCCGCGCTGCGAGAAAGGCATCGAAGTTGAGT 7046 30 100.0 36 .............................. CTGATGATTTGCTGGAGATGTAGCCATGGGCCAAGT 6980 30 100.0 35 .............................. GCCAGTGCCCAGCATGTCCAGCTTGGCGGCCTCGT 6915 30 100.0 36 .............................. ACCAGAAGGGCGCCGCCATCGCTCAGGCGATCCAGT 6849 30 100.0 37 .............................. ACCGGTATCGCGCCGCGCTTCAACACCGTCAGCACGT 6782 30 100.0 35 .............................. AACGTCGCTGGGGCCACTGTCCAGTACCTGCCCGT 6717 30 100.0 37 .............................. GATGAGCCCAATGTGTAGGAGGGTGAATGCCGTACGT 6650 30 100.0 38 .............................. AGCACGGTCTGGTCCATGTACCAGTCGAAGCCGAGGGT 6582 30 100.0 37 .............................. ATGGCTTTCTCCGGGCAAAAGAAAAGGCCCTATTGGT 6515 30 96.7 38 ........A..................... CATCAGATCAAGGCAGCACTGGTTGAGAAACCCCACGT 6447 30 100.0 35 .............................. TGGAAGTCCCCGACTATCCGGAAGATGCCGAAGGT 6382 30 100.0 38 .............................. GGCGCGACGGTCGTCAGGATGAGCGACGGTGCTGGCGT 6314 30 100.0 38 .............................. TTCTTGAGGGTGGAGAGGCGGGCTACTTTTGCCGGTGT 6246 30 100.0 38 .............................. ACGGGTGCGCCAGTGGAAAGGGAAATCACATGGAAGGT 6178 30 96.7 34 ...........T.................. CATTGCTCCGAGAGCACGTTCGTGCCTGGCATGT 6114 30 96.7 39 .......T...................... AGCCCTGGCCAGGTCGTAATGACCGCAGCCGGTGAGGTC 6045 28 90.0 37 ...........T................-- CAACTGCCGTTGTCGCGTGACGGCTATCAGGGAATGT 5981 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 98.1 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGTCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTAGATAGCGCGCAGTGGACACTCCTTAAGCATCGTCTGTGCGACCTAATCAATCCGGAACAAGACAGCCTACGTTTCTACTACTTGGGCACGAACTGGCAACATCGTATGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTAAATGGCCCGCTGATTCTTTAGCGTCGGCGCGAACCTAAAGCGACCGACCCAACCCTGAGGGGTTCGCAGCTCTCTAGCTGATTGATTTATATACTCTTTTTTTGACGTTAGCAGTTTGATGGCGCGCGCCTTGCCTAAATAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAGTAAGTTATAAGTGGGCGGT # Right flank : ATGGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCTCAGAGCCTGGCCAGGAACTCTTGTGTCACAGTGTCGCGGCCCCAAGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGAGCGGTGAAGCCCCTCGGGGTGTGGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //