Array 1 1290137-1290404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021358.1 Kushneria marisflavi strain SW32 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1290137 28 100.0 32 ............................ AAGTCGACCAAGGCCGAGCCCAAGCAGGAAAC 1290197 28 100.0 32 ............................ ATAACCGGCTATGTCTTTAGGGGGTTCATCAA 1290257 28 96.4 32 ..........A................. AAACCGATCATCGTCGCCGTCCGTGTCGAAGA 1290317 28 100.0 32 ............................ AAACCCGCCGCCAAACATCGACATGAGTATTG 1290377 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : ATGTCCGGTGCGGCCATCACGATCACCGTCATGACGCTGGCCGCGGCGCATACACTGGGGCTGGGCGTCGATTTCCTGACGGCGTTTCTGCTCTGCGTGGTCTCGGCCCTCGCGGCCTGCGGCGTATCCGGAGTAGCTGGGGGCTCGCTGCTGCTGATTCCGATGGCGGCCAGCCTGTTCGGCATTTCCGCTGACGTCGCGATGCAGATTGTCGCTGTTGGCTTTGTCATCAGCGTGCTGCAGGACTCCACGGAGACCGCCCTCAACTCCTCTACCGACGTGCTCTTCACCGCCGCGGCCTGTCGCTCCCCGGGAGCTCAACGGCGTCTGGACGATGAAGCCTACGACGAGACGGCCTGAGGTCGGAGCTCGGGTCGTGTTGCCAATACGAGTGTGCATCCTTTCGAGCCGCCCATTCGGGCGGCTCTTTCATTTCCTTTCCGAGCTGCCTGTACGGCAGCTCAGAAGTATGCCTCCATGACGGCTTGTCGAACAGGTCC # Right flank : AACGTCGAGCAGAAGCGGCCCAAACAGCGGCGACGACGATGTATGCGAGGTTAATGCCATCCCTTCGAACAGACGTATTCGGCAGGCGCCAAGCCTCGAAAGATTAGCCGTGACCGCTCGATATGCCGGAAAGACCCGGGTCATTTTTCAAGCGTGTAATCGATCGTGGTGACCACCCGTATTCGTTTGATGTCCGGGGTATAGCTGTCGAGATCCTCGATCGAAAAATAACCCTGGCTTGCGTTTTTGATGGTACCGACATGGCTGTCGGCATCCCGGGCAAACTGCTGCGCCGCACTGCGGGCATCTGCCGTGGCTTCTCCAATCATTTCGGGCTTCAGGGCATCAAGCCCGGTAAAGAGAAACTCGGTGCGATAGTCATAATTGGGCGAAAGCACCACGCCCTCACTGACCAGCTCTCCCGTTCGGGGCATTGCCTGCTTGACGCCCTCGACCTTCGGAGTGCGTAAAAGCACCGTTGCTTCCCCCTGATAGCGCTC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1393123-1390652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021358.1 Kushneria marisflavi strain SW32 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1393122 29 100.0 33 ............................. CGTGCCCTGATAGGCGATCCCGGCTGTGCCGGC 1393060 29 100.0 32 ............................. CGGTTTTTGTAGTTGACAGAATCCCAGTTTCC 1392999 29 100.0 32 ............................. GCCACCGATTGGGCGCTTCAGCAACTTGATGC 1392938 29 100.0 32 ............................. GCATTGAGTCAATGGCGTTTGCCAGCGCTTCG 1392877 29 100.0 32 ............................. GCTGCCGAATAACACCGGCATGCAACACCACC 1392816 29 100.0 32 ............................. GCTGCCTGATAGTTGTTCTCGGCTGCCGTTCG 1392755 29 100.0 32 ............................. TATACCATATTTCTACTGCTGTGTTGCAAAGC 1392694 29 100.0 32 ............................. ACTTGGACCGGCGCACAGAACGCCGACCCGGT 1392633 29 100.0 32 ............................. TCGGCCCTTCTGAATTGGCTGGGCGTACCGAT 1392572 29 100.0 32 ............................. TCTGGTGGTTCTTCCCCAGCGCGGACAGCGCG 1392511 29 100.0 32 ............................. GCGTGGCGAAGTGCAGGATTTGTTGATGATCA 1392450 29 100.0 32 ............................. GTCGCCAACTTCCCGGTGGCTGGCAACGTAGG 1392389 29 100.0 32 ............................. TCCTCGCTGGCCCGCAGTGGCTTGAACCACAT 1392328 29 100.0 32 ............................. AGAAAACCTCAAAGCTCAAGTCTCTGGGCGAT 1392267 29 100.0 32 ............................. CTTCCAGTCTGGCTCTGAGCCATACACTGGCG 1392206 29 100.0 32 ............................. TAGTAGGGCCCGAACACCTCGGTCATCCTGGG 1392145 29 100.0 32 ............................. TATGAAATATACATATCTCTTAACTGCATATT 1392084 29 100.0 32 ............................. CGTTCGTGGACAGCCACGCTTCAAGTGCGCGG 1392023 29 100.0 33 ............................. TCGACAAAAGGCGTTATAAGGATTTAACCCTTG 1391961 29 100.0 32 ............................. GCTGCGTTCGTGTTCACTCAGGTCGACCCACG 1391900 29 100.0 32 ............................. GTACATAAACGACGAAAACGATCCACGCACAA 1391839 29 100.0 32 ............................. ATCAGCTCATGTCCGCCAGCCTCGGCCTTGCC 1391778 29 100.0 32 ............................. GTTTCACCCAGCACCAGCTCCATGTCAGGCAC 1391717 29 100.0 32 ............................. GAATCTCACTGGGTCGTTGTGCGCAACGGTCT 1391656 29 100.0 32 ............................. GCCTTGCCCGCCACGCTTGATAAGCGGTGTGA 1391595 29 100.0 32 ............................. CCACAAACGCCCCGCGAGTACAGAAACCCCTG 1391534 29 100.0 32 ............................. CCGGATATCAGCACCGGCCAGAGCCCACTTCG 1391473 29 100.0 32 ............................. GCCACCCGGGTAGCTGAACAGTGCCAGACGAT 1391412 29 100.0 32 ............................. TCGGTGGCGAGATCACCATCAATGGCATTCAG 1391351 29 100.0 32 ............................. CGCGCAAACTCCGGGCCGGAAAAACGGGCGCT 1391290 29 100.0 32 ............................. ATGGAACAGCCGCATTGAGATTTGCTTTACAG 1391229 29 100.0 32 ............................. CCGCAGGACACTCTGGTAGCGATGATGATGGG 1391168 29 100.0 32 ............................. CCCGAGGAACCACCAGTAGAACCGCCGCCGCC 1391107 29 100.0 32 ............................. TCGCCATAGATACAATCAAGGCGCATTACAGG 1391046 29 100.0 32 ............................. ACGATCCATGTCATCGAGGTCGAGGGCCAGTC 1390985 29 100.0 32 ............................. ATTACGCCGCGCTGCTGCCTTGCTGGGCAGGT 1390924 29 100.0 32 ............................. CTCATTTGCTTCTCCGATGGTCTATCTGATAG 1390863 29 100.0 32 ............................. CTTCCCTACTAATGCAGGAGCTATGTGATGCA 1390802 29 100.0 32 ............................. CTGCCGGTATATATCAGAATGAATTGAGTCCA 1390741 29 93.1 32 ....................A..C..... TACAAAGGCACTGACCTCAGCGAGGTCACACC 1390680 29 82.8 0 ........T.....T...A....G..T.. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.4 32 CCGTTCCCCGCAGGCGCGGGGATAAACCG # Left flank : AAATCGAACCACCGCCACCCCCGGCCGATGCCGTGCCGCCCGCCATCCCCGAGCCTGAATCGATCGGCGATAGCGGCCACAGGAGTCGATGACATGGCGATGCTGGTGGTGGTAACAGAAGCCGTCCCCCCACGGTTGCGTGGCCGGCTGGCGATCTGGCTGCTGGAAATTCGCGCCGGTGTCTATGTGGGCGATGTCAGCAAGCGGATTCGCGAAATGATCTGGGAACAGATCGAGGTGCTGGCCGAGGAGGGCGGCAATGTTGCCATGGCCTGGGCCAGCAACCATGAATCCGGCTTCGAGTTTCAGACCTTTGGCGACAACCGTCGTATCCCCATCGACCATGACGGACTGCGTCTGGTGCGCTTTTTGCCGCCTATGGATAAGTAGCTGTTTTCAAAGCTCTTTAATAAAAAAGCGTTGTGCAAAAAATGATCAAAATCGCCGGTGGATTTTCTGCTGGCGATTTTTGTTATTGAAAACAGACGACTACAATTAGT # Right flank : TTATCCGGTGGCGCAGTCACCCCGCCATCACCGACGTCAATGTTTATCGCTAATCAGGGCGCAACGCCGGCGCCCTGAGCACCAGTTATCCGACGATTAACGGAGAACTGCATCGGCAGCTCGAACGAGCCAGGGTTGCATGGGCGCAGTGTGTGGCAGAAACCGGTGCGGTGATTGCATGTCATGAGGAGGGAAATTGAAAAGCACGTCCATGTGCAGAGCCCCCATGGTGGCGAGGCTCATCCTTGAATAAGAAATGTCGCATAAATGTTGAGCAATTAACATCGTTTGAAAGAAGAATTAATCCCTGGGAAAGCTCACCGCTCTGCATCAGTATCTGATCAAGGCCTGTGCCCATGCCCTTGAGGATAAGTGTTACTGGAGCGTGTAATGAGAACGTTTGCCGTCCTCCATGGATGCAGGGATTTGCCGGTGATGATCGTCAATTTCCGGGGAAGTGCCAATCGTCAAAGCGCCGTTCAGCGCTGGGCCTTACATCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGTTCCCCGCAGGCGCGGGGATCAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1406927-1403844 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021358.1 Kushneria marisflavi strain SW32 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1406926 29 100.0 32 ............................. CCCTGCACGATCAGTTATCCCGCGAGCTTGAA 1406865 29 100.0 32 ............................. TCCTCATTAATATCGCGCATGATGCTGCGATA 1406804 29 100.0 32 ............................. ATGATCAATAGCGGCCTTGAGCGTCCTTTTCT 1406743 29 100.0 32 ............................. GCGGACACTGTCATCACGACTGGCGCTGTACT 1406682 29 100.0 32 ............................. AACTGATAGAACGGGAACTGAAGAATGCACGA 1406621 29 100.0 32 ............................. GAATCCGACGAGACCGGCGAGAGCGGCGAAGC 1406560 29 100.0 32 ............................. TCTGATATTCGACGACACTGCATCTGGCGCTG 1406499 29 100.0 32 ............................. TCAGACTGGTAGTCCGCGAAAGACGAGTATAG 1406438 29 100.0 32 ............................. GCTGTGAGAGACGTTTTAACGGTGGGTCGGTA 1406377 29 100.0 32 ............................. CACCCCGCCGTGCATCCGGTGGCTCTTATCGC 1406316 29 100.0 32 ............................. GTTCGAGAGGGCGTTAATAACAGCGGGGTCGG 1406255 29 100.0 32 ............................. ATTCCATGCCTCTCGCCGCTTGATGCTCCATA 1406194 29 100.0 32 ............................. CTGTTTGGCCGCCTCCTCCTTTGGCAGCAGCT 1406133 29 100.0 32 ............................. CTCGCGATACAGGTGGCTGAACATGCAGATAA 1406072 29 100.0 32 ............................. TCTTCATGCGCATCGACGCCGATGGCGACGGC 1406011 29 100.0 32 ............................. ATGCACCCGATTAGATACCACGGGCCAAACAA 1405950 29 100.0 32 ............................. GTCGTCGGTCACCAGCGTCTTGTGGCCCAGTG 1405889 29 100.0 32 ............................. ATCAGGCGTCTGACCGAATATTGCCGTCAGGA 1405828 29 100.0 32 ............................. GACAGGTGATCCGGCCCTATCAGGGCCAGGCC 1405767 29 100.0 32 ............................. GTTGCTTCGTTTGAATCGGGGAGTTTGGCGAC 1405706 29 100.0 32 ............................. ATGGATTGCACAATCCAACCTTTCAGCAACTC 1405645 29 100.0 32 ............................. AGTCACCACAATGTATCCCTTCGGTCTCCATT 1405584 29 100.0 32 ............................. CCTCAGGGTTTCGCGCGGACCGACTCTGCCTG 1405523 29 100.0 32 ............................. CCAGCAGTCAGTGCAAAGCGGCGTGCCATCAT 1405462 29 100.0 32 ............................. ATGGCCTGATAGTACACGCGTACGCCATTGGG 1405401 29 100.0 32 ............................. CCGGCCGCATAATCAGGCTATCCATCAAAATC 1405340 29 100.0 32 ............................. CATTGCGCTCACTCTCTTTACGCTCGCTCGAT 1405279 29 100.0 32 ............................. GCCGCGGGTAAAGAGGGTATTTTGCTTGAGAA 1405218 29 100.0 33 ............................. GGTATCGCGCCGCCGGCGGGATGGCGGTGCAGA 1405156 29 100.0 32 ............................. AATATCCTGTCAGCGTGTCACAGATGATGAGA 1405095 29 100.0 32 ............................. CACGGAACCCACAAGAGACGTTTCGGCCTCAT 1405034 29 100.0 33 ............................. CAGGCGCTGATTGCCGAGCCAGAGCAGGCCGAC 1404972 29 100.0 32 ............................. GTTTTCCGGCGCATTGGCGGCACTCACAAGCT 1404911 29 100.0 32 ............................. ATTCTGGGATGCCGGTCTGGTCAAGCAGGGCA 1404850 29 100.0 32 ............................. AATGGCCTTTCTCACAGCGCTTGTGGCGCCAA 1404789 29 100.0 32 ............................. ATGCCGCGCTCAGTCCCGTGTCAGCAATTATC 1404728 29 100.0 32 ............................. CGTCACAGGCGACCGCTCAGCGTCAGCTTGCA 1404667 29 100.0 32 ............................. GCTCATCGGCCCACATCTGGCGCGACTCGGCC 1404606 29 100.0 32 ............................. AAACGCAAACATGCTGGGCGGCAATGGGTATG 1404545 29 100.0 33 ............................. TGGGCCGATGCTTCAGTCACCTATGGAGAGAAT 1404483 29 100.0 32 ............................. AATGCCTTCGTACCAGTCGGGACGTTGATAGA 1404422 29 100.0 32 ............................. GTGGCGGTGATCAGGGCGGCAGTGGTGCAGGT 1404361 29 100.0 32 ............................. ACGTATTGGCGCAGATGATGCAGCGCGCACTG 1404300 29 100.0 32 ............................. AACACCCGATCACATCTTGAATTGATCATGCA 1404239 29 100.0 32 ............................. AAATCCGCCGACGTCTCTATCTGGTCAACATG 1404178 29 100.0 32 ............................. GCATCAAAAGCGGCGTCAGGCATCGGGTTATA 1404117 29 100.0 33 ............................. CGATCAGTGGCGCCATACTGCGATGATTCCGAC 1404055 29 93.1 32 ............GA............... ATTGCGGAAGTTGCCCAGGCCACGACTGTCGC 1403994 29 93.1 32 ............GG............... ATGCCGATCCGTACCCAGCTGGCCCGCTTGGA 1403933 29 89.7 32 ............AA...A........... ACCCGACCTCTCCACTGGCAGGAGCCGGTCAC 1403872 29 86.2 0 ............GAT...A.......... | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.3 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CGATCAATGAAAAGCAAATCAGGTCAAAAGCCATCGCCGGTCGGTCCGACCGGATACCGCTGATGCCTCTTTTTCTGTCCGGGAGATCTCAGTGCCCAGTATCGATATCCAGCTCGATCTCAGCGCCGAGCAGTGCCGCGCCCACTACGCCGGCGTGGCCGACAGCATTCACACCCGCACGCCTGATGGGCGCAGCGTCATGCTGCCTTCAAGGGTGCTCCATCACATCATCAAACGTGACGGCGTGCATGGCACTTATCGCGTCACCTTCGATGATGGTGGGCGATTCATCTCGATCCGGGCGGTGTGATGACAGGACACAGGTTTTATGCCACTAGAGGAACACCGGTTTGAATAGCGTTGGTGAAACGTTTTTATTATATTTTTCTTGATCTCAAGTAATTGATTTATAGAACAAAATTATTTTACTCAGGGTGCGAAAAACCGGTGGAAAAACATCACCTGTTTTTGCTCTTTAAAAACAAAAGGTTATATTTAGA # Right flank : GAGTTAAAACAAGAAGCAGAAAAACAGGGCGGGTTTCAAACCGCGGAGATCCGATTGATATGAGTAATGGCGCCGTTCCAGACCATCTCATAGTGTTCGGTCTGAACAATGTCCCGGACCGGGCGAGGTGTCATCAACCCCCAGCAGAGGTTGCCCGGCGAGCGAGCCGAACGGTAGCGAAGACCGGGAAGGCCGTGCGCGTGAATCTCATCACCCAGGGCCCGCGAGGCGGTGTAGTCGTCAGGGGCATAAATGGCGTGGGTGGAAGCGAGCATCAGCGCATCTGCCATGCCGGATTGGTCGAATCGACAATGCAGGCCGCGCAGTACGAACCGCTCATAGCCAAGCTCGGGTACCTTGCGCCAATAAGCGGTCTGGTGATGGCTGACCTCGGCGATCGCCGTAGCCATCTCGTCGGCGATATAGAGCACACCAAATCGCCCGCGACTAAAGCGTGAGCCGGTCAGGTTAACGTGGGTGAACGGCGCGGTCGCATAGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //