Array 1 1388-319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPK010000110.1 Lactobacillus crispatus strain LB70 Contig_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1387 29 96.6 32 ............................C AGTCCAAGCATGGGACGCAACGTTCAAGAGTG 1326 29 100.0 33 ............................. GATTGATGGATCTGGTGCTTCTGCAACGTATGG 1264 29 100.0 32 ............................. TATTCATGAGAAGTTTTTAATTCAAAGAGGTA 1203 29 100.0 32 ............................. GGTTTTGTTGATTTATCTATTTTTTACTTAGA 1142 29 100.0 32 ............................. ATTTACGCCAATAAGCAAAACGGAAACTTAAA 1081 29 100.0 32 ............................. ATATGCGTGTGCGCCAACGTAGTGACGTGAGC 1020 29 96.6 32 ............................C TAAGAAGTGATCTTTGTTTACTTCAAAGATGC 959 29 100.0 32 ............................. AAGCCTGCCGAATAAACGGACGGGCTGGTATT 898 29 100.0 32 ............................. GCGTAACTAGTTCTTGAACCTTGCCAATAAGG 837 29 100.0 32 ............................. GCTACGGCAATGGACTTTTCAGCAAAGGTTTT 776 29 100.0 33 ............................. TTACTGCTAGCCCAAGTGAAGTTGTAGCAAATG 714 29 96.6 32 ............................C GAACATATGATGAGCATGAGCCGACTTGATTT 653 29 100.0 32 ............................. TAAGATAGTTGACCAGTTGCAGGATGAAAAGA 592 29 96.6 32 ............................C ACTGAAAACCAAAACTTAGAAACTACTGTAAA 531 29 96.6 32 ............................C AGTTTAGGTACCATTTTTTGACGATCAAAATC 470 29 93.1 32 ............AG............... AACAGCAGAAAGTGGGATGCATTGTGGAGCTA 409 29 100.0 32 ............................. TGCGAGGTATCGATCAAAAAGAAACGATTACT 348 29 82.8 0 ...........AC....T......T.A.. | A [327] ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTAC # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGACAACGCGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 683-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPK010000112.1 Lactobacillus crispatus strain LB70 Contig_112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 682 28 100.0 33 ............................ CAGAACTGTTGGCAAGGCTTGGCGCGATCTTAA 621 28 100.0 33 ............................ TAACCGGCAAAGGACGCAACAGGCAACTGGCAG 560 28 100.0 33 ............................ TAACCGTGAAGGGTTAATTGATACAGATGGAAC 499 28 100.0 33 ............................ CTACAAAGAAATTGAAGACTAACGGGGGTAAAA 438 28 100.0 33 ............................ TGACGCCGTCATGGGTCTTATCCATTTGCTTAA 377 28 100.0 33 ............................ TTTGAGTGAGCAAGAAGCCGATAAATGGTTGAA 316 28 100.0 33 ............................ TACCGCCGTCAGCAGAATCAATAGTCTCATTAC 255 28 100.0 33 ............................ CCGCATATGTTGCAAGTTGGCCAACAACATCTA 194 28 100.0 33 ............................ TAACAGCAGAAAGTGGGATGCATTGTGGAGCTA 133 28 92.9 33 ............TA.............. TTTACGTGACTGACTAAAAAACTGAATCCAGGC 72 28 71.4 0 ...........ACA........CT.AAT | ========== ====== ====== ====== ============================ ================================= ================== 11 28 96.8 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : GTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : TAGCTGCTCTGAAAAATATTTTCTATAGAGTGACTATTTTTGTAT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 3632-3420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPK010000119.1 Lactobacillus crispatus strain LB70 Contig_119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3631 29 100.0 32 ............................. TTATGGCTGAAATAAGCGCAACAATTAAGATT 3570 29 100.0 32 ............................. AGAGATGAATGATATTAAGATTTTAGGACGTA 3509 29 96.6 33 ............................C AGCACCAAGTGCAGTATCTCGGACATTACTCCA 3447 28 82.8 0 A.............C.......C-...T. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 94.9 33 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTT # Right flank : CCTCTTGTATCAAGGGATTTCTCTAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCTAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAAAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACCTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGCAAAAACAAA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9201-8317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPK010000105.1 Lactobacillus crispatus strain LB70 Contig_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9200 29 96.6 32 ............................C AAGTTTGCAAAATCGCTTGGTTACGGGCTAGG 9139 29 96.6 32 ............................C AAAAATCGGTTATGCATATATGAAAGAACATC 9078 29 100.0 32 ............................. TCATAGAACTTTCGGTCAATTCTGGTCCAAGA 9017 29 100.0 32 ............................. AAGACTGATCATCATATGTATTTTGTCTTACT 8956 29 96.6 32 ............................C CTGAGAGTAACTAACACTAGGCAAACTAATAC 8895 29 100.0 32 ............................. TGTCGGCGGCTCCTGGTAGCTCTAATTTTGGT 8834 29 100.0 32 ............................. CTACCAAAAGTAGCTCCTGGAGCAACTGCTTG 8773 29 96.6 32 ............................C AAAAACTTGGCACTTCAATTGGAAGAATCCAA 8712 29 100.0 32 ............................. ATGGCAAAGAGTCAAGAACAAACCAACAAGGT 8651 29 100.0 32 ............................. CTTAGATGTATGTCATTTCTTTAAGGTGGTAA 8590 29 100.0 32 ............................. CTTAGATGTATGTCATTTCTTTAAGGTGGTAA 8529 29 100.0 32 ............................. TACAATATAAGAAGTTTAATTAAATTAAGATG 8468 29 96.6 32 ............................C ACTGTAATTGAAGATACAAAACTATCGTGGAA 8407 29 100.0 32 ............................. ATGCAGAGTGGCGTGCATGTCATGATTACAGG 8346 29 86.2 0 .............A...........AA.A | C [8321] ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.9 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTGGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : GCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTCGCTTTGAAAAAAATAGATAATGGCGTTGATGCAGAAATGATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //