Array 1 587512-587751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZT01000007.1 Bifidobacterium thermacidophilum subsp. thermacidophilum strain LMG 21395 Contig7, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 587512 25 92.0 48 ..............T.......A.. GCGGTTTGGCGGGGTGGTTTGGTTGGTTTGGTGGTGCCGGGTGGTCGT 587585 25 100.0 44 ......................... ACCGGTTGGGTGGTTGCGTTTGGCTGGATTGTTGGTCTTGACCT 587654 25 88.0 48 ............C.......C.A.. GCGGGTGAGGCAGTCGGGATTGGGGTTCTGGATGGCTTGGGAAGTCAG 587727 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================ ================== 4 25 95.0 47 TGTGTGAGGATTGGCTCGCATGGTG # Left flank : GATTCTCGAGGTCGGAGCCGCGCAAAGCGCCTGCCTGCTTAAAAATGACCTTGCCACCCTTGACGACCATTAGCGTGGGCACGGCCTGGATTTGGGCCGCGGCGGCGAGTTCCTGATTCTGATCGATGTCGACCTTCGCGAAGGTGATGTCGGGATGCTCTTCGCTCGCCTTCTCAAACACCGGGCCGAAGGCCTTGCACGGTCCACACCAGGTGGCCCAGAAGTCAACGAACACCAGGTTGTTGTCGGTGATGGTCTTCTCGAATGTCTGTGTAGTTACTGCGGTGGTTGCCATGATGGCTCCTTACTTCCGGTGTCCCCGCTTTCCGGGCGACTGTCGTGCTATCCGTGAGTCGGATTGTCGCGGTTCGTGTGTGTTTCGTGGTTCCCAGCATCCCACACCGTGCCTGAAAGTCAAGCGCTGTCCGCCGATAGCCGAACCGCAGATGGTTCGGATGCTGGCATGGGGATTGCGCCCCGTGAACGGGCGGATGCGGCGT # Right flank : GGCGGCGGTCGCGTGCTTGCACAATCAACAGCAGTCACGGCATCGTGAGGATTCCGTTGTCACCTGCTTGCGACCCCGCGGTCCGCACCTGCTGGCGAACACGCCGCCAGGATTCTTGGGGTTGGGCAATAATGGAACCATGCCAGTGCTGAATGACGAGGTGCCCGACGAGGGCGACTACGATGCGAATCGCCGCAGAGGCGAGTTCGACCATATCACGCCGGAGGATTTCATCCGCGGATCAGGCCACGGCAACCCTCCGGGATGGCTTGACTCGGGCGAAATCACCCGGATCCGTCGTGAAACCCCGATGCCGTACGTTGTCGTTGTGCCGGTGCGCGTTGATGATTTCGGCCGAATCAGCAAGGTCGGCTCCCTCTTGTGTGTCAGCGAGGACGGGTCGGTTGAGCGCACGTTGATTGCCGGGCGAGTGCTGTATCACGAATCCGTGCGTGAGGCCATCGCCCGCAATATCTCCAAGGATCTCGGCGATATCGCGC # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGTGAGGATTGGCTCGCATGGTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 350271-344345 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZT01000006.1 Bifidobacterium thermacidophilum subsp. thermacidophilum strain LMG 21395 Contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 350270 33 100.0 34 ................................. GTTGAGTAGCCAACCGTCGTGCCTGTTCCTGCCG 350203 33 100.0 35 ................................. GAGGGCTTCGCCTTTGGTGCGGTAGGAGTGCCACG 350135 33 100.0 34 ................................. CCGGAGAGTATCATCATGTTGTTGATTATGATTG 350068 33 100.0 34 ................................. CTTACGCGGCCTGTCTTGGTGCCATCGATGATGA 350001 33 100.0 35 ................................. TTGCCGTGATCGCGTGCATAGTGGGCATGGCGCAA 349933 33 100.0 33 ................................. ACAGGAAATGCAAGACTCAATGAAGTGCCTTGC 349867 33 100.0 34 ................................. TCCATACGGTCCGAACCACCCGCATGGACGGGCA 349800 33 100.0 34 ................................. ATCATGCAGCCGAACGGGCGCGTGGAGAAGAACG 349733 33 100.0 34 ................................. TGCCGATTGAAAAGTCCCATAACATCACCTGCCT 349666 33 100.0 33 ................................. CCTTGTTTTTGGAGCGGAGCGACCTATTGAAAG 349600 33 100.0 34 ................................. AACATGACACGCTTCAGGGAAGGATACGACACGG 349533 33 100.0 33 ................................. ACTGTCTGCGGGCCAGTCGAATGACATGCTCGC 349467 33 100.0 33 ................................. ATGCTTGCGCCCGCGTCGGTCTTGCCATCCCAG 349401 33 100.0 33 ................................. TGTTTCAATCCATTCAGAAAGCCGTTGATGATG 349335 33 100.0 35 ................................. TGCTCGACACCGGCGGCAAGCTCTGTGCCGGACTT 349267 33 100.0 34 ................................. ACGACTGCCATCAGCACGGGCGTGAAAAACATCA 349200 33 100.0 34 ................................. GAATTCGACGTTGCCGCCCCACATCGACCATTTG 349133 33 100.0 33 ................................. ATGATATTGATGGTTTTATTGACACTCCAGTGA 349067 33 100.0 34 ................................. CGATATCATGTCCTGCCTGCATATCACGAAGGTG 349000 33 100.0 33 ................................. TAGTCTATCCCTCACCGCGTCTGCGATAGCGAG 348934 33 100.0 34 ................................. CTGACGAAGCACTGCAATATCATCTATCAGGGGC 348867 33 100.0 34 ................................. GTATCACCACCAAGTGACTGGATAAGCGACGCGG 348800 33 100.0 33 ................................. CATGCACGTTTGCCGGTGTCGGTCTGCGTGAAA 348734 33 100.0 34 ................................. AGAAAGCCGTTGATGATGGCGATACCAGCGTCCT 348667 33 100.0 35 ................................. TGCACTACGTTCGGCCGCCGCGATGCAGTCGGATG 348599 33 100.0 34 ................................. AATCCAGCGCGCGATATCCTCGCCCATTTGATTT 348532 33 100.0 35 ................................. TGCGTCTCATCCAGCAGATGGCAAACGAACTCAAG 348464 33 100.0 34 ................................. GCGCTTGACACGTTGTTGTTGTAGGTTTGCTGGT 348397 33 100.0 33 ................................. GTCAACTAGCGTGCCGCCGACGATGGTGGCACG 348331 33 100.0 32 ................................. ACCTCACGGCATTACGGCGAAACACACACCGT 348266 33 100.0 35 ................................. TTCAACCAATGCAAAGCCAAACACGCAGTCTGCTG 348198 33 100.0 35 ................................. TCGCGCTCCAATGCTGCGAGCCTGTCCGCGAGCAG 348130 33 100.0 34 ................................. GTCGTCTCCGAAATCAACCAGCACGCCCAGTACA 348063 33 100.0 35 ................................. CTCGTGGTCGGCGCGGCGCAGACGCTCGACAATGC 347995 33 100.0 33 ................................. CTTGCCCCGGTCACGCCGGTAGCCCACTCCAGG 347929 33 100.0 35 ................................. CCGCAGGTCGTGTTCTACGCGGCCGTCACCGGATG 347861 33 97.0 33 ..T.............................. ATCCGCCCCGACCTGTGGAAGGCCGGCATCGAC 347795 33 100.0 36 ................................. TAAACGCTTGGAGGGGCTATGGGATTGCTTGACAGG 347726 33 100.0 33 ................................. CGGAAGGTCATCGTCGAGGTCGCGCGTCAGAAC 347660 33 100.0 34 ................................. CGGCAGCGACATCGTGTGCGCTTCGAACACCGAT 347593 33 100.0 34 ................................. TACGTGCGTGCCGCACAGGCGGCCATCCGTCGTG 347526 33 100.0 34 ................................. ATTCACGTGTGTAATACCAGCAGCGCCAGCAAAT 347459 33 100.0 34 ................................. CTCGGATACGATCAGACAACGGCTAGCCGAACGC 347392 33 100.0 34 ................................. GTGAGAGTGAGACCATGGTCCGCTTGCACGAACA 347325 33 100.0 33 ................................. ATCCGCGATGGAAGAACTCGAAGCCAAACGGAG T,G [347296,347305] 347257 33 100.0 37 ................................. ATGCAGTCGCAACTGGCTGATGCGGCGCGGCGTGCGC C [347238] 347186 33 100.0 34 ................................. GTCCAATTGGAGCCGAGTCTCAAGGAGCTTGGCG 347119 33 100.0 34 ................................. TGGATGGTCTGCACGATGGCGAGCTTGGAATCCT 347052 33 100.0 34 ................................. ACCAACACCCTTAGAAGTCAACGCCGCAAGCCCG 346985 33 100.0 33 ................................. GCGACGCGGCCTCCGTTAAGTGATACAAGTGGT 346919 33 100.0 34 ................................. TGTGCGTTACGCACCTCATCAGTCAGGTCCGGAG 346852 33 100.0 33 ................................. TGGTGTCCGCTGGACTCGCGTAGGTGGGTGTCC 346786 33 100.0 34 ................................. CAGATCAAATTCATCGAACCGAAAACCAAGTAAC 346719 33 100.0 34 ................................. TCGGCCACCGGCCCAAGCAGAACCAGCCCGGCTG 346652 33 100.0 34 ................................. CAAACCAACAATTGGAAGGCCTACTGGGGTGGCG 346585 33 100.0 34 ................................. ATGCACGCGGCCACCGACACGCGCCGCTCATGGC 346518 33 100.0 33 ................................. GCTCCAGCCATCATGCCTTTGTGAGCTTCGCTA 346452 33 100.0 34 ................................. TTTCGCGCAATCTCCAACAAGCAAGTCTCATACT 346385 33 100.0 33 ................................. TGAAGATGAAGTCGGATATTGTAAAAAAGTCTT 346319 33 100.0 34 ................................. TTTGTCACGACTTTTAAACGCTATCAGGTGCAGA 346252 33 100.0 34 ................................. TTTGTCACGACTTTTAAACGCTATCAGGTGCAGA 346185 33 100.0 33 ................................. ATCATAGCACACACGATTGGAGAACACAAAATG 346119 33 100.0 33 ................................. CCTGCGGTACTGTTCGATCTGCGCGTTGTAGTT 346053 33 100.0 34 ................................. GTTGTCGGTCGGGTCTCCGGGCTGTGGGATGGAT 345986 33 100.0 33 ................................. CTGACCGCGCACGCACAATCTTGACATTCTCAA 345920 33 100.0 34 ................................. ATGTTCGAATCGTAAGTACATCTGGCATTCTGGA 345853 33 100.0 34 ................................. CTACCGTGAGCGGGAACGCGCAACAATCGAATGG 345786 33 100.0 33 ................................. CTCAACGATCTCGCCATCGCCCGACAGAATGGC 345720 33 100.0 35 ................................. CCGCTCACACGCGATGAATTTAAAGGGTCTACTGA 345652 33 100.0 34 ................................. AACACGCCTTTCGCGACGCCGAATCCGCCGGCAT C [345629] 345584 33 100.0 35 ................................. CATCGAACCCGCGCGCGTCCGCGATGTTCCCGCAA 345516 33 100.0 33 ................................. AAGCTGAGCGCGTCCGCTGTGGCGACATTGACC 345450 33 100.0 34 ................................. TACTCGGTCCACAAAAGCAAGGCCGATGCATGGT 345383 33 100.0 34 ................................. CATTCGCTTCCCTCCTTGTCAGGTGAGCCATGCG 345316 33 100.0 36 ................................. CATGCCTCCTCCTTGTCTTGTTTGAGTGCCTGGGTG 345247 33 100.0 33 ................................. CCGCGTTGGCGGTTGTGAAGTCGGGGAGCCAGG 345181 33 100.0 35 ................................. CAGCGCGGGCACGCCAGCGGACTGGGCGACGCTGA 345113 33 100.0 33 ................................. TTCGTCGTGTCCGGTTCCGTGTAGTCGGTGTTG 345047 33 100.0 34 ................................. CTGCGTGACGCGTCGCCAGCCTGTTCGCTCGACG 344980 33 100.0 33 ................................. TCGTCCTCCACCGGGCCGTAGAGTCGCAGATTG 344914 33 100.0 37 ................................. CCTGTCCCTCGACACCGACGGCACCTCGGCGACGATC 344844 33 100.0 32 ................................. GACGGTGTCCCCGTCGGATGGGGTCCAGCCGA 344779 33 100.0 32 ................................. ATACGCGCCTGAATGGCTCGCGCCGTCTCAGG 344714 33 100.0 33 ................................. CTCACACCGGCGGTCGGAGGTTTCGTCTCCTCA 344648 33 100.0 35 ................................. CCGACGAAGTCGGTAATATGCTTCCAAATATTGTG 344580 33 100.0 34 ................................. CACGCGATACTCTCATACCCGTCAGAGCTGCTGG 344513 33 100.0 35 ................................. ATCGGTGGAGATCCATGAAACATCCTTGTACACGA 344445 33 100.0 35 ................................. CATGTGGTGTGAAGATCATCCCGACGACACGGAAC 344377 33 97.0 0 .............................C... | ========== ====== ====== ====== ================================= ===================================== ================== 89 33 99.9 34 ATCGCTCCCCGTATGGGGAGCGTGAGTTGAAAT # Left flank : CAGGAAACCGGACGGCATCGGTGCCCTATTCCGCAACCGACCACACCGTCCAAAATGAACGCCACGACTGTTCAGAAAAAGTGACGAAACCGTCCACATCTAATTGAACACAAACAACGAGCCGGCAGATGCCCGGCAATCTGGTCGTTCCCATGTGCTTCCACCCGGTTGAGTATGTCACCACATACGCAACGAAATGGAATGTGTAAAGCAATAACTTTGTCCCTATACGCCTTCATGTTGCACCCTTTAAAAATAAGAAGTAGATGATAATGAATAATGTATAGAAACTTATCGTTTGGTGCGAACCGATAGTTCTCATCATGCGTTGGGCATGCTCGCACCTTATTTCGTGTACTATTAGGGCATGAATCGAGTATTTCGACTTCACGGCGGTTTGAAAAATGACAAAGTGTTCTAAGTTTGTCTTGCGCGCGGTATTCTAAATATGGCGATATGGGAACGTGTCCACATGGTGGATTTAATATTTCATTTTCGCC # Right flank : GGAGTTCGTGCTCATAGAACTATCTCCAGAATTGTCATTCCCCATATCAGGCGGCTCGTGGATGTATGTTGCTTTTCACCTTGGTCTGCATCTTTCGGGCTTGCATGTTTCCTGCGTTCTGCTTGCACTTCCGCTTGGCGATGCGATTGTCCAACATTCGTGCCGTTGTGTTCTGCCAGTTTATCTGCTGATTTTATCGGGTCGGCGATGGCGCAAGTTTCTATGTATGATAACTGCGGTGCGTTTGCGCTTTGCGGCAATGAGCGAGAGTCTGCACCAAATGAATCTTTGGTGCAGATACTGCTCTCGCTTCTACTTTTTCAACTCACGCGAATGGATCGAAACTAACCTTTCGCGAACACCGGAGAGGTGTTTTGCCGGTTTTCGGCGATTGCGCATCTTGCTATTCAGTAGAAGAGATAGCGGCAAAATGTGCTATTATTGGTTCTAGCGAACGCCGGCATCGGCAACTGCATGTTACCGATGTGTTTAGTTTAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTCCCCGTATGGGGAGCGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //