Array 1 2949-1964 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCI01000163.1 Microcystis aeruginosa FACHB-905 = DIANCHI905 contig163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2948 36 100.0 36 .................................... CCGTGATATTCAATGGGGGGCGTCTGGGATTTTTAA 2876 36 100.0 36 .................................... TCACTACTAATGTGGCATTGTTTTTATGGCCTTTTG 2804 36 100.0 34 .................................... CCAGCCGTGAACACGCAGCCATGGAGCAGCGTCA 2734 36 100.0 40 .................................... TCGGTGAGCAGTCTGTGGATTTCTTGTTTGAGGCTTGGCA 2658 36 100.0 36 .................................... TTTTGTAATACTGATAAATCTATCAGAGAATCAAGA 2586 36 100.0 38 .................................... TCAGCACAAGAGTTCGAGTTAAAGTGGTACGAAACAAA 2512 36 100.0 36 .................................... CTAGGGCATGGACACTTTGGCAATTGGCTAAAAGCC 2440 36 100.0 41 .................................... TAAAATTGCCTCAGCTAGGACGGTTTAACTGGTATGTTTTC 2363 36 100.0 36 .................................... CCTTACAGCGTAAAATCGATAAACAGAGCAAAACTC 2291 36 100.0 39 .................................... TAGATTTAATTCAAGAATTAGCCGATAAAATACTGGCAT 2216 36 100.0 35 .................................... CGAAGCCATAAAGTTCAAGACTCGTAAGAGCGAGC 2145 36 100.0 36 .................................... GCTTTTGGTACTCAGCAATCATTCTTTCTGGATTAG 2073 36 100.0 38 .................................... AGGAATTTTTGGTTGTCACTCGTTTCAATCCCTAATAA 1999 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 14 36 100.0 37 GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Left flank : CTTCAGCAAACGAACCTGAGTGATCGCACTAATTCCTAGAAGGCTTAACGCGACAATTTATAGCATTTTTATCGATTTTTGTCAAGATATATTTGACACAATTTATTAGAAAAAGGGTTTCTAATTAAAGAGGGCGAATGCAATTCGCCCCTACAATAATATTATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGGGCGAATGCAATTCGCCCCTACAATAATATTATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGTAGGATGGGTTAGCGGTAGCGTAACATAATCGGGCGTTGGGTTTCATGCTTCAACCCAACCTACGTTCATTTTATATTTAATTCCACCCACCTACTTATAGATATTTCGACAAAATTGAAAGGCAGAAAAAGGGTTTCTAAAAGAAACCCTTTTTCTA # Right flank : AGTACCCCTTGGAAAGTCTCATCGAGAGGGGAAGACAGACCCCCAAATCGACGCATCTCCAAAAAGGTGGTCCTGGGGGGGATAAAAGTCCCGATACCAAAGGGTAGAACCCTGACTGGGAGAGCAATCGACACATCTAACCAGAGAATCGGGGTTTTAGGTCGGGGAGGGGGTGCATCGATTTTCAGTCAAGAGTTAGGGGACAAGCTAGATGATGTAGAGATTTGGGGGTGGTTGAGGAGGAGAACCTCCCATCACCAATAATCTAGAGACAGCTTCTTCGGAAATCCCATAGAAGCGCACATCATCCTCTTGAGGATTGACCCTTTCTACTACTTTAGCGTACAGTTTCCGCCTCTCGATGTGTAATTAATTTTGCTTAAGTAATTATCTGTAATTAAGTAGCTGGTTATAATTAAATTAAAAATGGATTTTAGGTTCGATCCCCCCTGCCCCCCTTGATCTATCCATTAGTCACATCTTTCTTAACATAAAATTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1308-621 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCI01000017.1 Microcystis aeruginosa FACHB-905 = DIANCHI905 contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 1307 35 100.0 37 ................................... GCGACCACTAGTCCGCTCACGATACCGAACGAATAAA 1235 35 100.0 40 ................................... TTGACTTTATTCTGTTTAGGAAGGGTCAATTTTCCTTGCT 1160 35 100.0 39 ................................... CCCAATAAGAGAACAAACCCCATTATAAAAATTGGGGTT 1086 35 100.0 37 ................................... GAGAAGTTAGATACTTTTGCACTACCCCACACATGAA 1014 35 100.0 36 ................................... GGTTTTAAACTCCTTCTCCAGAAGAATTGCGGAGAA 943 35 100.0 38 ................................... GTGGTATCCTGGCTAGCCACCGTAGTGATAGATGCCAG 870 35 100.0 35 ................................... ATAAAGCTACATCGTCGCTGTTAGCCGCAACATAC 800 35 100.0 36 ................................... AAATACCTCCTAGCTGGAATGCGACTAGCGCACCCA 729 35 100.0 39 ................................... GATGTGTAGGGTTAATTCATGAATTAACCCTACAATTTT 655 35 77.1 0 T..AA........AA.T......C.....A..... | ========== ====== ====== ====== =================================== ======================================== ================== 10 35 97.7 38 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : ATTACGATTCATCAAGTTGGTCATCGTCGAGATATTTATTCTGATTAGTTTTAGTTTAATTACTTCCATTCCAAAAAATTGCTCCTTCTAAAAGCGATCGCACTCCTCCTCATCAAAATCTCCAAAAAAGTTGCTTCTTCCAAAAGTGATCGCTATTCCTCATCATCAAAAAGCGATGTCGTCCTGACAATGAGGGACAGGAAAGCAGTACCCATGTAATTTTAATGGACAAAGCCCTTAAATCTGCGGGTATTAGTCCATAGGAACAGTGATCAGTTATTAGTTATCAGTTATCGGTTATCAACATTTTTCGCGGGTTAGACACAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGTAAGGCTTTGAGCCTGATGACCGAGGTGACTATTGACAATTATTATTAATAATGTCTATGCTTTTCAATATCCCACGAAAAATCGTTGTACAATCCTTGTACAGCCTAGCTTTGCAAAGCTAGT # Right flank : GATGCTTAATTAAGAAAAATCAATGAAAACAAAGATTGTTTAAAAAAAATTATTTAAAATTAACACAATAATTAGAAATTTAGTGATAGATATAAAAGTACAAAAGAGCCAATTAATCTAACAATCCTATTTTTTTAGCCAGAGATAAGTCTTTTCTAGGTCTTTTCAAGGCTGTTGAATATACCTCTTCAACAATCGAGTTTTCTATAGCTTTATGTCCAAATATATAGCCATCACCCTGACTGACGGACACAAGTGGGTCAAAACCTGACAAGACAAGGGTTGCCAAAAAGAAAAATATCTGGGTAGATAGGGAAAAAGCAAGAATCCCTACAAGATGAAAACCGAGAACAGAATCTTCTCCCAAGTTTATTCCTATCTAGAACAAGGAAGCCGATTTGTGGATAAAAGACATTTAACCGTCCTCAGTTGGATGGTGACAGCCCTACTCAGTAGTCAAAGTCTCAATCAAGCCAGATGGGAACCCTTTGTACAAAGCA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 4187-3432 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCI01000017.1 Microcystis aeruginosa FACHB-905 = DIANCHI905 contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 4186 35 100.0 37 ................................... CCTAATATCTTCCGCAATGGCAAGCACTTCTGGGTTA 4114 35 100.0 36 ................................... CCTCCTTGCCATGGAAAGGAACTAGTGGTGGGGGGA 4043 35 100.0 37 ................................... GGCAAGCATCCATGCTACCATCATTAGCAAGCACCGC 3971 35 97.1 39 .............................A..... AGTCTCTACCTCTGTAACAACAACGGGTACCTCGGCCTG 3897 35 100.0 36 ................................... TCTTTTTCGGTAGAGGCCTCTGAGGAAACCCTCAAA 3826 35 100.0 38 ................................... ACTCTATCCTTGGGGATAAGAGCACTTGTTTCGCCCAA 3753 35 100.0 36 ................................... CCAAATTGTTCTCCTGTGGGAGACAAAATCCACCAA 3682 35 100.0 37 ................................... GTTTCATCCGTCATCCACCATACAATCGGATCGATGC 3610 35 100.0 35 ................................... TTTTTCAACATTGTTTTAAGGGACCTAGGGTTAAC 3540 35 97.1 39 ..................................A GATGTGTAGGGTTAATTCATGAATTGACCCTACAATTTT 3466 35 77.1 0 T..AA........A..T...T.CC........... | ========== ====== ====== ====== =================================== ======================================= ================== 11 35 97.4 37 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : ACGAGGTTTATATTGGTAGCGCCGATTGGATGACGCGGAACCTGAGTCGTCGCGTGGAAGCAGTGACACCCATCGATGAACCAGCGATCGCCAAGGAACTGGAAGAAATTCTCGGCATCATGTTGTCAGATAACCGACAAGCATGGGAATTACAATCCGATGGCAGTTATATTCAGCGTCGTGCTGACAATGAGGGACAGGAAAGCAGTACCCATGTAATTTTAATGGACAAAGCCCTTAAATCTGCGGGTATTAGTCCATAGGAACAGTGATCAGTTATTAGTTATTAGTTATCGGTTATCAACATTTTTCGCGGGTTAGACACAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGTAAGGCTTTGAGCCTGATGACCGAGGTGACTATTGACAATTATTATTAATAATGTCTATGCTTTTCAATATCCCACGAAAAATCGTTGTACAATCCTTGTACAGCCTAGTTTTGCAAAGCTAGT # Right flank : AGAATGCCAGGGATCAATCCCATCTCATCGGTTAAGAAAAATCCGAGATTTCAGCGAGATTATGCGTCAGTGGGGACAACAATTTCAGAGGAACTTTAACCAGACTGAACTCGGCAGAATAATTTATGCGGGAGGAGATGATTTTTTAGGCATCGTTTATAATAGCCAATTTCCTGATCCACAACTCGACTCGATCGATCTCGATCGAGTTCTCCACTGGCTACAAACTCCTCATAAGTAGAGTTTGCTGAATAAATGTGAAATGTAGGCAAGGTCAGGGTTTTGTGGCTTTTCTCGTGAAACAGGTGCAAGATTTTGAGAGAATCGTGCTTCAAAACCTTGCGTCTTCATCGGCCCGCGTCCTGTAGGGGCGAAGCATTCGGGCAGTAACCTATCGGTGAAACCGTAGATTTTCTATCCGAATGCTTCGCCCGTACTTTTTCAGCAAACCCTAAGCAGCGATCGCACTTTCAAAAGACCAAATAATCACATTTAAAGGA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 9688-4779 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCI01000069.1 Microcystis aeruginosa FACHB-905 = DIANCHI905 contig69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 9687 37 100.0 36 ..................................... AAAGAGGAAAAAGAAGAAATATTAACCCCTAGCAAT 9614 37 100.0 38 ..................................... ATATTCTTTTAAGACTTTCCGCGCTTTCGGTGAATCGA 9539 37 100.0 35 ..................................... ACCATCAACGGAACCGCAAGATCGATCGCTACCCC 9467 37 100.0 40 ..................................... CGCCGGAAGCTATGGGTGCTGATACCCTTAAATCCCAATC 9390 37 100.0 36 ..................................... TATCAAGGGGATTGAGGATAAATTAAATAAGGTAAG 9317 37 100.0 36 ..................................... GTTGTAATAATATAGTAAAGAAGGAATAACAACAGT 9244 37 100.0 37 ..................................... ATCAAACGCGGTCGATGCTCGATCAATGTCTTCTAAA 9170 37 100.0 36 ..................................... AATCGCACAATCAAAACCATAGCCGATCCTAATATT 9097 37 100.0 34 ..................................... TTTTAGGTGATTTTTTAGGTTGAGATTTAGGATT 9026 37 100.0 35 ..................................... CAAGATGCCGTTTATGGAAAAGGATTTTATCTGAC 8954 37 100.0 33 ..................................... ATAACACTCCTGAGCGCATCCGCCAAGCTGATG 8884 37 100.0 33 ..................................... CCACTAGGAAACTCAACAGAATCGCCTACTTTA 8814 37 100.0 34 ..................................... CAGAATCTCTCTCAGATAAGGAACCCGACTCGTT 8743 37 100.0 34 ..................................... TGGTAAATTATTTGCTAAACTTGTAGCTGATCTT 8672 37 100.0 35 ..................................... TCCCCGCCAGTGACATCCCGACAAGTGCAAGTAAA 8600 37 100.0 39 ..................................... TATTTCTGGAACCGACCAGAAATAGAATTCATCAGCCGC 8524 37 100.0 35 ..................................... ATCGATGGAATTGGGGATGCGATCGAAGACCCGGA 8452 37 100.0 36 ..................................... CTAAGTATTGGACTGCGGCCTTAGCACTCATCCCCA 8379 37 100.0 34 ..................................... TCGCTCCGAAATCTTTGGAGCCACAATTATCGGA 8308 37 100.0 36 ..................................... TTCACTAACCCATCGATATAGGCAATAAAATCAAGC 8235 37 100.0 34 ..................................... TTCCCGTATCCCGGTTCCCCCCAAAAAAGCCCTA 8164 37 100.0 36 ..................................... TCCGACGCACCGCCACCTCAGCCAAAGGAAGATCGG 8091 37 100.0 35 ..................................... GTATTTAAAGCCTTAGATTCTATAGATTCTATGGA 8019 37 100.0 35 ..................................... ATGCCCTTTGCATCGAAACAAACAAAACTCACTTA 7947 37 100.0 36 ..................................... CTCGACTGTTTTCACTACCTGAGCTTGGGCATTGCC 7874 37 100.0 34 ..................................... TTTTACAACTCTTTGCATGGCTTAAAACCTAAGC 7803 37 100.0 39 ..................................... ATCGGAGGTTTATCTGCTAAAAGATTTATAATCTTTATT 7727 37 100.0 34 ..................................... CTTTTTTTATCAGCATACGGGATGGGATATAGCC 7656 37 100.0 34 ..................................... CTCCTTTTGTGAAGGGATCAATTGATTCAAAGTG 7585 37 100.0 34 ..................................... ATCAATTTACTCCTTTTAAATATTAGCTTCTGCC 7514 37 100.0 35 ..................................... CTGTTCCTTTTCAATTGCCTATTCCTTCTCGTAAG 7442 37 100.0 40 ..................................... AGACAATAGCCCATGTCAATGTCATGTGTTATTACCGAAA 7365 37 100.0 35 ..................................... AAATCGTCAAACTAAGCGAAGAGAAGCAAATACTA 7293 37 100.0 34 ..................................... ATTGAATACGATCCCATTATTTAGTCCCTCAAAT 7222 37 100.0 34 ..................................... CTAATAAAAAAGGTATTCCAATGAGGCTACCGGC 7151 37 100.0 36 ..................................... CACCTCCGGTAACGGGTGAGTATATTGGAGCTTCTG 7078 37 100.0 35 ..................................... TTGATTGCTATCATCAAGGCATGAATGACAACCTT 7006 37 100.0 37 ..................................... AGTAATCAGTGAGTATTAAGGAGTGAGCAGTAAACAG 6932 37 100.0 37 ..................................... GGCCGGTGGGGGGGCGAGCGAGCCGCAGACTGCCCGC 6858 37 100.0 35 ..................................... AACTATTTCTAATTCTTTCCCCAATGTTAAACTGG 6786 37 100.0 34 ..................................... AAGTATGTGGGAGAATCATCTTTGAACGTTTGTA 6715 37 100.0 36 ..................................... ATGTAGGCATCTATTTGGGAGACGGTGAGTATATTC 6642 37 100.0 36 ..................................... AGTTGCTCAAAGTATTCTTCTTCAACATTCTGGGGA 6569 37 100.0 35 ..................................... GAATCAAAATCAAAGATGCCAAAACTTTCCCAAAA 6497 37 100.0 35 ..................................... GTGATTGAGGTGTAGGCAGTTCCCGCCCATCTAAC 6425 37 100.0 34 ..................................... AATCTTTGCCGCTCAACCCCCTAATAAGCTCCCT 6354 37 100.0 45 ..................................... ATGGCTTCGGCTCAAACCGGAAAGACAGAAGCGGCGCTGAATACG 6272 37 100.0 35 ..................................... AGGAGCAATATAGGCAATATTACCCCTGATATCAT 6200 37 100.0 36 ..................................... AGAGCATATTCGCTATTTTCGCTAGGGAATGTTAGG 6127 37 100.0 34 ..................................... TTGATTTGATAAATGGCGATTTCAATTTTCTCGA 6056 37 100.0 35 ..................................... TCGCCGGTAAAGCCTTCCTCTACTTTTTCAATAAA 5984 37 100.0 34 ..................................... GCGTCCCGGTTTCCCTTCTTTCCCGTCGCGTCCC 5913 37 100.0 34 ..................................... TCTCCTTGTTCCGCCAATTCCTGGCAGATTTCTT 5842 37 100.0 35 ..................................... GAAGAATTCAATAGGAAAATAAGGAAAATACGACA 5770 37 100.0 36 ..................................... CAAAATCGAGCTAGGCCGCCTCAGTGAGGCGCAAAT 5697 37 100.0 37 ..................................... AGCGGACAAATAAAGAGCGATCGCCTCATCGAGAATA 5623 37 100.0 37 ..................................... ATGTAAACTCCGAGCAACTGATTAACAAATCAAGCAC 5549 37 100.0 35 ..................................... TAGTTAAGTGGATTGTTACGGGAGGTAACATAATT 5477 37 100.0 39 ..................................... CCTTCCGGCCCGGAGACAAATCTGGAACCTATTTCGGAA 5401 37 100.0 38 ..................................... TAGCGGGGAAACTGGGATTACAATAAATTAAAGACATA 5326 37 100.0 33 ..................................... AACGGCTTTGTAGCTGGCTAGACAAGATTGATT 5256 37 100.0 35 ..................................... CACTTAATAGCCAATCAACAAGTTCAATCTGTCTT 5184 37 100.0 39 ..................................... AACGCTTGATTAGGGTTCCAGCCAGCGAAATTATTCACC 5108 37 100.0 36 ..................................... TAGAACAAGCGCAGTGTTGTCTTATCGAATTATATG 5035 37 100.0 34 ..................................... CTTTTTCTTCTAATTTCTGGAATACAGGATAAAA 4964 37 100.0 40 ..................................... ATAGCTAACCTGTTCTACTGGATTTTGAGGTTTATTTATG 4887 37 100.0 35 ..................................... GTCTGTTTACCATTCTTAAGATTTGGGAAGTTATC 4815 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 68 37 100.0 36 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : TTTGTTGTCAGTTACGATATTTCCGACGATAAGCGACGAACCAAAATTCACAATACGTTAAAGTCCTACGGCCAACGGGTGCAGTATAGTGTTTTTGAGTGCGATCTAACCGATACCCAGTACGCTAAGCTGCGCGGGCGCTTGAGTAAGTTGATCAAACCCGATACCGATAGCATCCGCTTTTATTTTCTCTGCGCCTGTTGTCGGGGTAAAGTGGAACGTATCGGTGGTGAGTTACCCCGGGATAATACGATTTTTTTTGTTTAGCTCGGTTGCGCCTCGGAATAGCTGTAAAAATCCTTAACTATTATCTGGTGGCTGGAAAGCTTATGCAATATAGATTCGAGATGATTTTCCTTTCTAACGCGGGGCGCACCTTATCCCGTAAGGTTTTGCGGGGTCTTGAAGAACTGGGTCACTTGCTGTACAATAGATTTATTGCGGGTGCGGCGCATACGAACCTTGAAAACCCCATAGCGTATAGCTTTTACCACTGGGCG # Right flank : TGGAACTTGAAACCTTCTAGTCTATTAATTTCAAAATGAGAATTGCTGTCAGTGAGTTTATCGAACTGCTTGCGTCCAAAATATCCTATAAATTAGAGGAAGTATAAGCTAATTTGTATTGATAGTAAATCTGTTTTTAATAGTATGAGCAACTCTCAATCGCACGCTAAAAACCTTCTCCCTTGTTCCTTCTCCCCACTTCTCCATACCTATTACCTAGCATTATTAGTATTCTATAATACCAATGCTTAGGAAACTATAAAGAAAATCCCAAGATTAGGCGATTCCCTTGGCGAAAAAGGCTATAGTAGCATAAAATCCGTAATTTGATCCACAAAATTGTTATGACAGTTACCAATAGACAAGAGCTAGAAGAACTGATTCAACAGGTGAAAAAAGCTCAACAACAATTTGCCAACTATAGCCAAGAACAAGTAGATCTTATCTTCAAAAAAGCGGCATTAGCAGCCAACAACGCTCGCATTCCCCTGGCTAAAATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 13583-19469 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCI01000034.1 Microcystis aeruginosa FACHB-905 = DIANCHI905 contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 13583 36 100.0 41 .................................... GCGAGCTTCTAGTAAAGAACGGAAGTTAATTCTTTTATACT 13660 36 100.0 37 .................................... AATTCAGCAACTTGGCTTTCAAGTTGGTTTACTTCTG 13733 36 100.0 36 .................................... CATAAAATCGGGAGTGTTTTCCATGTTTTTAGAAAT 13805 36 100.0 37 .................................... TGGCAAGTTACCCGGAGAGTGGTAATCTGTCCCTGAA 13878 36 100.0 38 .................................... CAGAAAAAGAAAAACACATTGATCAGCTTAATGATAAT 13952 36 100.0 42 .................................... CCATGATATTAAAGCAATCGCACCTCAAGGGGATAAATTAAC 14030 36 100.0 45 .................................... AGTAAAGTCGCCAGACATAACGGGGACTTTGACAGAACTCTCTAC 14111 36 100.0 35 .................................... ATTTAGCTTGACACGGTTTGAGTTTTGTGTTACCA 14182 36 100.0 37 .................................... ACTAAGGCTCTTTTATGGATTTTTAGAGCGTCATATA 14255 36 100.0 36 .................................... AAAATCATTAATGTTCTTTATCAATCTGGAATTTAT 14327 36 100.0 38 .................................... AAATTCAGACTCTTCTTTTTGAGGCTCAAATCTGTTAT 14401 36 100.0 41 .................................... GTCTATATAATTATGTCTTGTGGGAAACTTGGCAGTAAAAC 14478 36 100.0 36 .................................... TTGAGGATCATAATCAATGTGTATCATTTGACCTTT 14550 36 100.0 41 .................................... TACACAAAAATCGGAGCAAATAATAAAAGAATTAAATACAA 14627 36 100.0 36 .................................... ACGAAGGCTATGTTACTACGTATTTCGACACTAACA 14699 36 100.0 38 .................................... AAAATCGGGAGTGCTATTTTCCATGTTTTTAGAGTAAT 14773 36 100.0 35 .................................... AGAGCGCATGCTAGAGGATGTGGCCCTGTATTTCC 14844 36 100.0 41 .................................... TTTGGATTTTGATTTTGGTTTTGGTTCATGATTCTCCTTAT 14921 36 100.0 42 .................................... ACGCCTTGCGTCATCTCACCAATCCAACGAATAGCGCTCCAA 14999 36 100.0 36 .................................... TCCAGAAATTTGACCTCGACCCGTGAAGGTAGTTGG 15071 36 100.0 41 .................................... TAAAAAACATCGATAGGTTCATGATTGATGCCAATTACCCC 15148 36 100.0 37 .................................... GGATTTGAATGATTCGTACACCTTGATAAAATTTTGA 15221 36 100.0 37 .................................... AACTCTTCATAACGCCCGTCTTGTTTTCGCCAATCAT 15294 36 100.0 40 .................................... ATTAATGGCATCAGAGCAAGGAATTATTATAGACGAAAAA 15370 36 100.0 42 .................................... AGTCTATCTACCGTTAAACGATGGAAAGAAAGTGTAAAAAAT 15448 36 100.0 37 .................................... ACAGTCCATTCTTTTATCTCCGCTAAATTGATATCTT 15521 36 100.0 36 .................................... TGGTCAAATCGCTGATCTCGTTGTCTATCATCAAGC 15593 36 100.0 37 .................................... AATGGAAGCATAAGGTAACTCCAAATTAAATACTCTA 15666 36 100.0 38 .................................... AAACCCGTCAGGTATATCAATTTTAGCCTGTTCATCGA 15740 36 100.0 39 .................................... GTGAGTGCATGGAAAAAAGAAATCAAAATCCCTGTTTCC 15815 36 100.0 41 .................................... TTTTGCCTTTTGCCGCAATATATCAAGGTTGCCTATAAATT 15892 36 100.0 36 .................................... GGGTAAAGCCACCCATGCGTGTGTTGACCAATGTAA 15964 36 100.0 36 .................................... ATCTTCCTGTTTGGTTTCGCCTGTGAGTAGTTCGCA 16036 36 100.0 37 .................................... TAACTGCGGGCGCTCACAATCAAACAGAGAATCGATC 16109 36 100.0 36 .................................... TCTTGGTAATAGGTAATAGGAACGAGGAGAAGCCGA 16181 36 100.0 38 .................................... TCATTTGATTTTTCCTCGTGTGTTTTTTGCTGATAACT 16255 36 100.0 36 .................................... GCGCGAGTGCCATTTTCTTGAATCTCTTTTACAGAA 16327 36 100.0 38 .................................... TCGCCAATTAGTATAAGGCGATTAGCTGGTATATCTAG 16401 36 100.0 41 .................................... ATGGATATTTAATAATTGATACAGTAGAGGCTTTTTTGTCA 16478 36 100.0 39 .................................... AATTCTTCTACCCGCAATAATAGCGCTTCGATTTCTAAA 16553 36 100.0 39 .................................... TCAGCAAAGTCATTGACATCCATAAACCACTCTTCCCAT 16628 36 100.0 36 .................................... TTGAAAAGTTGTCGTCAATCCTGAAAAAGGAGCATT 16700 36 100.0 36 .................................... TAGTTGTAGCGTAGCGGGCAACGTTCGAGTAGTTGA 16772 36 100.0 36 .................................... TTGTTTTTCTGAAATAGTTTTGCCTAATTTTCTTTA 16844 36 100.0 40 .................................... TTCTCCTGCATTCTCGTTAGACATAGAAACACGGGGGAGA 16920 36 100.0 38 .................................... GTATCTAACTAATCTCTATTCCGTTACTGTCAGCAAAA 16994 36 100.0 39 .................................... CAGCAAAGTTTTCTGGTAACTTAAATTTAGGTTTTTTAG 17069 36 100.0 35 .................................... AAAACTTGCCTAATTCGTTCTTTACCTATTCTTAA 17140 36 100.0 40 .................................... GATCGCGAAAATGAAAGCCGCCTAAGCCTCTACGATCAAG 17216 36 100.0 37 .................................... GTGGTGGGACAAATGGCTATATGTGGGGGAGATTTTT 17289 36 100.0 35 .................................... ATAACAAAATGATATAATTAATGTGACAGATTAAT 17360 36 100.0 36 .................................... TGATGGCCCTCACCCACGCCGCCCTATCCGTGGCGG 17432 36 100.0 39 .................................... TTTTTATTGATGGCAAAAGAGTATTTATTTTTATCGATC 17507 36 100.0 35 .................................... TGATCCGCTTCCCATTGGTGGCCGCAATTATCGCA 17578 36 100.0 38 .................................... CTAATTAATAAATATACAGAAAATAGCAAACTAGGCTT 17652 36 100.0 35 .................................... GTCCCGTGATTTTGGCGATTTCCGAGTAGGTTCGG 17723 36 100.0 38 .................................... CCAAGTGCGATTAGTAACAATTTCTTCTTCGGTTTTGG 17797 36 100.0 36 .................................... TGGAAAATTTGTGACAAAATGGGATACATAATAGTC 17869 36 100.0 37 .................................... AAAAGCGACAAAATACCCTAGGTCTTTGACATAAATC 17942 36 100.0 35 .................................... CATTTGCCACCTGCCAAAAATTGATTAGTTTCTAA 18013 36 100.0 40 .................................... AGTATAGACCCGCATCATAAGAATCCCGGCTATATCCGAT 18089 36 100.0 38 .................................... TTTTGTCCTTTGGCAACCATAGTAAAATTGCCAGACAT 18163 36 100.0 47 .................................... CTAAAAGCGAGATTTGCTTTTGAATTAATCCTTGCTTGGCTTTGTCA 18246 36 100.0 36 .................................... ATTCTTCGGGTTTTTAGCCCGCAATCAAACCAGTAG 18318 36 100.0 38 .................................... CACACACACAGTACAATGTTCACTCCGGAGTATATGCA 18392 36 100.0 38 .................................... ACCTTCCCATTTTCCCACAAATTCACCATTAGGAGTTA 18466 36 100.0 36 .................................... GGGAAGGGGTTAAATATACCTATGGTCAAAGATTGC 18538 36 100.0 42 .................................... TTTGTTGGTGTGAGTGTGGCTATTAGTCACGGCCGCATCAAT 18616 36 100.0 40 .................................... TGATCAGTTAATAATCAATTAAACAATCTTAACGCAATCG 18692 36 100.0 36 .................................... TAATCAGGATTAAAATCCTCCTCCTGAAGGATTTTG 18764 36 100.0 42 .................................... TCTCGAAAATAGAAAGCAAGTTTTTCTCTGTTAAGATAGTTA 18842 36 100.0 37 .................................... TTAAAACCTCGTTGTTCTAAAACTTTATTGTACTCTT 18915 36 100.0 42 .................................... TGTTCTGTATTGAGCCACAAAGGGTCAAGGGTTACGGATACC 18993 36 100.0 36 .................................... TGTAAGATTAAATAACTCTACTACTATGATAACCAA 19065 36 100.0 37 .................................... TAGGTTCCTTTCCGCGCCTCATGGAATGCAATAAATT 19138 36 100.0 38 .................................... AATCAATATCTAAAAATAGATGTTGTTTGTCAAATAAA 19212 36 100.0 37 .................................... TGAAGAGGGGGAAAATTTAGGAGTAATCGGCGATTTA 19285 36 100.0 40 .................................... ACTACTTAAAACTCTTGCCATGTCATCGGGTCGGTTGATG 19361 36 100.0 36 .................................... TTTTCGGCTAATTTTTTACTGCACTTGTAGCGATAA 19433 35 77.8 0 .............-T...C....GC.....CTC... | AG [19442] ========== ====== ====== ====== ==================================== =============================================== ================== 80 36 99.7 38 CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Left flank : AGTTTTCAATACCTACCTACTTAATCATGTTATTTTATGTCATCGCCTATGATATTCCCTGCAATAAAAGACGTAAAAAAGTGGCTGATTTGCTGGAAGGATACGGCCAACGGGTTCAGTATTCAGTTTTCGAGTGTGTTTTAAGCAAATCTCTATACAATCAGTTAAGAGAACGCCTGCAAAAGCAAATCAAAGAAAACGAGGATAGTATTCGATTTTACCCCATCTCTGGCCATACTTTAGCACAAATAGAGACTTTAGGCGGTGTCCCGCTAACTAAAGCGCCAAGTTCTACGATCATCTGATTCGGTATCATCGACTAGCGACCGACAGGGGTGGGAGCAGATAACCTCGGTTTCCGGTAAAATCCCTCGATCTACCACAGGATAAGGGTTTTGTGGTTTATGGGGTTGACTGCGCGACCGTATCTAGCTATAATTAACTTATCCGTCGCAACTGGCTTCCGAACCCCAATCCTGTTCGGACGTTTGCCCACCGGC # Right flank : CAGACGATTTAAATGCGCGGGCAGCTTATCCTATATGGTAATGTTTAATTATATTCCCACAAAAGTTGCTTATGTCCTTACCTGAACTCCCTCTTCATCTTCAATTAACCCAAATGGTTTCGGGTTACTGGCTATCTCAGGCCATCTATGCTGCGGCTAAATTAAGTCTAGCCGAGCATTTAAGCAAAGGAGCGAAATCCTGTCAAGATTTGGCCTCCCTAACTGAGACTAATCCTGCTGCTTTATACCGACTGATGCGAGCATTAGCTAGTGTAGGAATTTTTCAAGAAACTGAATCTCAACAGTTTATACTAACTCCCTTAGCCGAACATTTATCTAGTGACCATCCCCGGTCAGTAAAAGCGACAGCGATTATGTTAGGAGAAGCCCCCCATTATCAAGCCTGGGGAAATGTGTTACATAGTATTAAAACGGGACAACCATCCTTTGATGATGTCTTTGGGATGGGAGTCTTTGAATATTTTCAAACCCATCCCCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //