Array 1 3453-2868 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDCC01000083.1 Nocardia vaccinii NBRC 15922, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3452 29 96.6 32 ............................C CCGGGCACCCCACCAGACCGGTGATCCCTGCG 3391 29 96.6 32 ............................C GAGGTGATCGTGTCCTGGATGCCTTCATCGCG 3330 29 100.0 32 ............................. CGATCGTGACCACCGATGGGCGGCTGCTGGTC 3269 29 96.6 32 ............................T CAGTAGATTGGAGCCGCATGAGCCCCAGGAAT 3208 29 100.0 39 ............................. TCCATGAGGGCGGCGATCTGGCGGATGCTCATGCCATCG 3140 29 100.0 32 ............................. TCCTCGAGGTTGATCAGGCGAGCATGAGGGTC 3079 29 96.6 32 ............................T CGACGTTGGTCGCCATGGCGAGATATGTCTTC 3018 29 100.0 32 ............................. AAGGGCCGCAGCGTCGGAATCGTCGTGGTTCT 2957 29 100.0 32 ............................. CCCACTGCTCGGCAGGCTTGATCCAGCACCTC 2896 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 98.6 33 ATGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : TGGTGCGGCGGGAGTTCCTGCGCGAGTCCGATATTCCTGATGGTCAGAATATCGAGCTGATTCGCGATATCGCCGAGCTGGGGTTGGCTCGTGGGGTCACGGTGATCGTGGAAGGTATTCTCAGTGCCCGTCGTTACGGAGCCATGCTCGAACAACTGGCCGCGCGAGCCGAACGCGCTTGGTTCTACGCATTCGATCTGTCTTTCACCGAAACCTTGGACCGCCACGCTCGGCGTCCCAAGGCCAGCGAATTCGGTGCCGAGGAGATGCATGGTTGGTATCACGGTTGGGATCCATTGGGTTTCGTGACCGAGGCTCGTATCGACGCAGTCCCGGCCGTGGCCGATATCGTCGAGACCATCTATGCAGACATCACTTGATCAGCGCATGCGCGATGGCGGCGTTGGGGCGCTAGGGGGCCGGTTGGAGAGGCTTAATCAGGTAGGACGAAAGTGAATGAAAATGCGTCTGATCGTCGGCAGACCTGCTGGTCAGGAAGT # Right flank : GCTCTCGGCCCTTCGGCGTTCCGGCTCGACTACATCGAGCCCTACTCCAAGGCGGCCCGCACGTGGCTGCACGCCGAGGCCGTCGTCATCGACACCACGCACCTCACGCCCGCCCAGGCCGCCCGGCACATCGCAGAAGCCGTCAACAAATGAAGTCACCTCCATGCGAAGATCGAGAAGGCTCGCATGATACTGCGGGTCAGCGGCGACTGCGGAATCTGGAAAAAAAGGGGTTGCTCTGAGCTCGAACGCCGGGTCTGCTGGCGGTATGGTACGAGACCCGACAGTGAATGTGCCCGTGCTGAGCGACGGCGATTCGGTGGTGCTGCGCGCCCATCGTCGCGAGGATCTGCCCGCAATCATCGAGCAATGCGCCGACCCGGACATGCTCCGGTACACCACGATTCCGCGGCCGTACACCGACCGCGACGCATATGAGTTCCTCGAACTCGCGCGCTCGAACTGGGCGCAGCACACGCCCACGTCCCGCCGGATCTGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10089-7687 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDCC01000097.1 Nocardia vaccinii NBRC 15922, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 10088 29 100.0 32 ............................. CTGCAAGGCCGGTTCGACCGCGCTCACGGACT 10027 29 96.6 32 ............................C GCGGTGATATCGGGGTTGTTCGGGGTTGTCCC 9966 29 96.6 32 ............................T CCGGTTGATGACCGCCGCGCACCTGGCCGCGT 9905 29 96.6 32 ............................T TCGGCCGACCGGCCCGGTCGGTCTGGACGAAC 9844 29 96.6 32 ............................T CGACCTCGAGTGCGGTCGCGATGCGGTCGAGT 9783 29 96.6 32 ............................C GCACCGGTGCCGCCGAACGCCGCGATCGACCC 9722 29 96.6 32 ............................T TCATCACCGCCTACGAAGAAGGCTGGGGTGTG 9661 29 100.0 32 ............................. GGCATGGCTGCCGCGACGTGGCTGCTGGATGC 9600 29 100.0 32 ............................. CTGTGCGCTTCGTCGACTACGACGAGGATGAT 9539 29 100.0 32 ............................. GCCGGCCGAACGCTCGACCGGCCTCACCCGAA 9478 29 100.0 32 ............................. CACGCTCACCTCGGCCAGGCTCTCACCCAGGC 9417 29 100.0 32 ............................. TCCAGGCTCTGCGGCGACAGCTCCTTGCCCTG 9356 29 96.6 32 ............................C GCGCGCACCAGCGCCCAGTAGTCGCCGATGTC 9295 29 96.6 32 ............................T GGTGCATCCAGGCAACGACATTCAGCGTCATC 9234 29 100.0 32 ............................. GGCTATGTGTATAGGCTGCTCGAGCTGAAAGC 9173 29 96.6 32 ............................T TCATCGAGCGCGTGCGTGGCAAGGAGGAAAAG 9112 29 93.1 32 .................T..........C GCAGCTAGCGACCGGACTGGTGTCCGCGCCGC 9051 29 96.6 32 ............................C GTCTGGTTCGCCACACCGATACTCGCTGGATA 8990 29 96.6 32 ............................T AGATGGGACGGTTCGCGGGCATCCCGCACAGG 8929 29 96.6 32 ............................C GCACAAGGGTTGCGGACCACTACCGGGAAGGA 8868 29 100.0 32 ............................. GAATTCGACAAAGCCGCTTGGGCAGCGGCGGA 8807 29 96.6 32 ............................C GAACGCCGCTACGGGTTGCTGCTGGTGACGTT 8746 29 100.0 32 ............................. TTCTCCGCGTGGGTGGCGATCGCCATCTGCCA 8685 29 96.6 32 ............................C ATCAGAGCCACACCCCGACCACATCCACATAC 8624 29 96.6 32 ............................C AGCTCAAGGCCAAGCTCGAGGATCTGGCGAAA 8563 29 96.6 32 ............................T TCGGGCAGGTCCCGCACGAACGTGGGCTCGGT 8502 29 96.6 32 ............................T CGTGCTCAGCGACCAGATAAACCGCCTGGCGC 8441 29 96.6 32 ............................C CGCCTCCGCAGGTACATCTTCGGCGGTCAACG 8380 29 100.0 32 ............................. TCACAGGCCCACCGCCTGCTCAGTGCGCCGGT 8319 29 100.0 32 ............................. CCAGCGGAGCTGGTGCGGCAGCCTGGTGAGTG 8258 29 96.6 32 ............................C GAACGTCGCTACGACAGTGACCACAAATTCGT 8197 29 100.0 32 ............................. GTGACCGCCGACTTGCAGGCGCAGCCGCAGAT 8136 29 93.1 32 .................A..........C CGCGCTGACGCAGACGGAGGTTCGGCGGAGTA 8075 29 93.1 32 ....................A.......T CCACCCCTGATGGAGGTGCCCTCATGGGCGAA 8014 29 100.0 32 ............................. ATCGGCCCGTTGTCACCCGGGGTGTCCGTGAC 7953 29 96.6 32 ............................C AAGCGCACGCTGTTTGAGATCGCTCTGCGGCG 7892 29 100.0 32 ............................. CAGCGCGGCGGCATCTTCTCCACGGCCAAGCA 7831 29 93.1 87 .................A......C.... GCGTTCACACGGATCGCGATCCGGATCCCATGCTCCCTGCGAAGGGGATGATCCGGAGAACATCGCCAGCGTGCGCAACCTGTTCCA 7715 29 86.2 0 A.......T.................TT. | ========== ====== ====== ====== ============================= ======================================================================================= ================== 39 29 97.2 33 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : AGACGAATTTTGACCGTCGTTGTACTCACCGCTGTACCACCGGGTCTGCGAGGGCACCTTACTCGATGGCTCCTGGAAATCAGCCCCGGCGTGTTCATAGGCCACCTCTCCCCTCGTGTGCGCGAGCTCATGTGGGAACGGATCGTCGAATTCGTCTCCGATGGAAGAGCACTCATGGTTTTCACCGCTCGCAACGAACAGCGCCTCACCTTCAAAGTCCACGGACACGACTGGACCCCGGTCGACTATGACGGCATCACACTGATGCAGCGTCAAACCGTCCCCGACTACATCCCCATGACTCGGACCCCGCCAGCACCCAACAGCACCCCGTCCGCCTCCGGAGCCCGACTACCAGACGACACCGTATGGCGCCGTCGGGCCGCGCGCCGCAAGTTCAAGCCGAAGTAGGTCATCAACGAATACCCAATACTCCCGCTGCCGGAACGAAACTGAATGAAAAACCACCGATCTCACTGCGGAAGGCCAGGTCAGAAAGT # Right flank : TGCCGGTCCATGCCTGTGGTGATATCAATGCCGTGCGGTGTACCGGCTACAACCGTCGTCGCCCGTGGATTGTGTTGACTCCGATGGGAGCCGGGCTGCAGTGTCGGTGGTGCGGTCGCTCACCCACGCGATTTCGTTCATAATTGAGCGCATCGCGTGCTGAAGTCAGTTCAGAGCTTGACCGTTAGCTGGTCGAATTGGCGGCTGAACTGCTGTGCACGGTCGCTCTGCGACTTTTCGGCCATGGCGCGCACGGGTTGTAGTTCGGCTACCAGGCGCTTGGACTTCACGGGTCCTTGCAGCAGGGTGAGCGCGGAAAGCCCTTCGGTCAGTGCGGTGTTGGTGTCGCCCAGCCGCGCGAGGGCGGCCGAATAGTAGGCGCGGTAGGAGGCTTCGTCACGTGCCTTGGCGTGTGCGCCGACGCTGGCCTGGTAAATGGTGACAGCGATGTCGTGTTGGCCGAGGAAGGTGCGGGCCTGCGCAGTGATCGACTGGATCTC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //