Array 1 194706-195178 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQZC01000003.1 Actinomyces bowdenii strain OH5050 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 194706 36 100.0 36 .................................... GCGGTGGCATCGATGAGGTCGGGCAGGACGGTGCAG 194778 36 100.0 38 .................................... CAGATGACGCGGTATCGAAGACATCCAGGATTCCGGAC 194852 36 100.0 37 .................................... TTCGTGGGGATGCGGGCGCTGATTTCGGCTACTAACG 194925 36 100.0 36 .................................... CGCACCAGCCAGGATGCGGAGGCGGTGGGCCCATCG 194997 36 97.2 36 .................G.................. GCCACGAACGGGTCGTGCACGACCGCGGCACCCGTC 195069 36 100.0 34 .................................... TGCATGATGTGGCGCAAGGCGAACCCGTCCTGCG 195139 36 83.3 0 ............G..........GG.C..A.....T | GC,C,C [195165,195170,195175] ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 97.2 36 GTTGCAGTTCCTCCGGGAACTGCACTTCATTGAAGC # Left flank : GTACCGGGGAGTGACGGTGCGCTGATGCGTGACGACGTCAGACGCGTCCTTGTGGCCTACGATGTCCCGTCGGACCGGCGCCGGAACCGGGTGGCGAAGAAACTGCTGACCTACGGCGACCGCATCCAGTACTCGGTGTTCGTCGTGGATGCCTCCCCGGCCAAGCTCCTGCGGATGCGCGGCGAACTGGACGGGATCATCGACGCCGAGGAGGATTCCGTGCTCCTATGCGATGTGGGCCTGCTGTCCTCCATCGACGAGCGGCGCTTCTCCTATGTGGGCCTGACCCGGACCATCACACCGGAGGGGCCGCTCATCGCCTGATGCGAGCGCTCCGGTGCTCTGGGATCCCCGCGGAGCGCTCGCGGGCGGGAATCGTTGAGACTGCGGGCATCGTGCGCTAGCCTTGAGCGACGCGGAGGGCGCCGGCCGGCTTGCTGGCCGCAGCGCTCGCAGGACCCCCTCGGATCCCCGGCAGGCCGGGCTATTCTGAGGGTGCT # Right flank : TACTGGGGGTGGGAGCCGCAGAATCTTGCGGCTCCCACCCCCAGTGCTCGGAGATGCGCGGTGGGGTCGACCCCGTGATGGGCAGGGCAGTCCAGGGGTCGCCCGCCCCCGTTGCGGGCCCCGGCAAGTGGCCCCGCGCCGGGGGCCTCAGCCCTGAGCGGATGAGCCCTGGTCGCCCTGCCCCTCAGGCGCCTGCCCGCCAGGCCCCTGGCCACTCGGGCCACCAGGACCGCCCGCACCACCAGGGGCCTCGCCACCAGCCATGGGCCCGCCCATCCCGGCGGACAGGGCGGAGGCGGTCGCAGTAGCAGAGCCGCCGGACGTGGAGGACACCGTGTACTCCCTGCCCTCCTTCAGGCCCAGGACCGTGATATCGGCGGCGGAGATCGCACTGGTCAGCGACCACTCCGAAGCCCCGCTGAGGGTGATGGTGTCTCCTTCAGCGACAGCGGGCCCCCCGGTGAGGCCCACAAGGGTCGTGGCCCCGTTGGCGTCGATCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTTCCTCCGGGAACTGCACTTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 2131-2740 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQZC01000021.1 Actinomyces bowdenii strain OH5050 scaffold_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2131 37 100.0 36 ..................................... GGAACAATAATGAGTGAAGTCTGCCACTCCTGGGGC 2204 37 100.0 35 ..................................... TAACGTACTCCTGGTAACCAGGAGCTTTCGACAAT 2276 37 97.3 35 .............T....................... TATCAGGCGCGCGCGAAACCGCGGCACCCGACGAT 2348 37 100.0 33 ..................................... GACAGCTCCAGGGGCAGCTCTTCCCCTCTTTCT 2418 37 100.0 34 ..................................... TCTTGGGATCCATGGGGCTCTCCTTTCAGGAGAA 2489 37 100.0 35 ..................................... CAGTCTTGGATAACGACCATGCCGTTTTCCTTCCC 2561 37 97.3 35 .............T....................... GCGATGGCCACAATGGGCACCATCACAAAGATGTA 2633 37 97.3 35 ..........G.......................... AGGAAGAACTGGCCCTGGGGCATGAACGAGACGGC 2705 36 70.3 0 ..............T.G.T.CG.G.....-.C.G.GG | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 95.8 35 GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Left flank : TGGGGCTACAGGATCCAGGAGTCCGTCTTCCAGATCAGTATGGAGCACTCCGAGCTGGAGGGTCTCATTGAAGAGATCGAGGAGATCATTGAGAGCACCGACGACGTTGTGCACATCTACCGCTTGTGCCGTCCCTGCCACGATCGCATCCAAGTGCTCGGCACACCGCCGAGTCAGGATGATGGAGGGCTGTACCGGGGCCTGTTCTGAGCGTCGGAGGACGGCGGGGCGGGCGCTGGGAAGGCACTCACACATGCAGAATGGGATCTTGGTCCTACATGTCGGATGTCTGATGTTGCCGGGGGAGGGGGACTTTTCCGCATGGTCTCGTTGGATTCCGGGTGACGGGGGCGCTGGAGGGGCGTCGCTGGCGCTGTGGCGCTGACCTGCGTGGATGTGGTACAAAGGGGTCTGTGCCGGGGCGGTCTGGAGGGTGCCGACGGGTCGCCTGCGCTGCGCCTCGCATCACTGCTGGTCAAAGGGGGTGGTTCGAGGGGTGG # Right flank : GCGTGCAGCGGGTGGTACGGGAGTCGGGAAGGGGCGAGAGTTCCGATCGACTCGGATGCTGCACATCTTCAAGGGCGGGTCGGCAGGAGGATCCGCATGATTCCGCGGATCTTCCGACCGACGGCCCGGCCAGGGCCGCTGAAGATGTGCAACAGGACGCGCGGGCCGCCGAGGGCGGACCTTCAGGTGCTCCGCCTTGTCACGACAATCCCGCAGCGACCGGAGCAGAATGACCTGTCAAACAAGGGGCTGGCACCCACCTGGGGCGATGACGTGCTGCACCGGGTCCCGTTCCCGGCGCAGCAAGGAATGCCTCCGGAATTCCGAACTCCATCGACAGATATTACGCAAGCATTCAGGTTGTTTTCAGTAAAATGTCAGGCCTTGCGTTAGGGACGGAATCTCGCGGATTGAGTGGGGTAACGGCGTGAGTGGCTGCCGATGGGGGTCCATGGTCATAGGTGCGGCACACTTCCGGTCCGGCAAACTGTCACGCGGAA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Alternate repeat : GTCAGAAGGCACCTCGCGCCATAAGGTGCATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 35376-41182 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQZC01000025.1 Actinomyces bowdenii strain OH5050 scaffold_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 35376 29 100.0 32 ............................. TCAGGGTCGGTGAGGGCCTTCTCCACGGCCTC 35437 29 96.6 32 ............................T CAACCAGGCCCGAGTCCTCCTCGAACCCGAAG 35498 29 100.0 32 ............................. GTCCACCGCACGAAGAGGGGCCGCTGCTACGT 35559 29 100.0 32 ............................. GAAGCCGGCCTGACCCTCCCCTCAGAGGAGGG 35620 29 100.0 32 ............................. CCCAAGCGAGGCACCCGCCTTCCAGTCGACTG 35681 29 96.6 32 ............................C GAGTCCGGGTCGCACAAAGAATTCAGCGCGGC 35742 29 96.6 32 ............................C CCCTTAATGTAAGGCAGCCACAGTTCCGGATC 35803 29 100.0 32 ............................. ACCTTGGGTATGAGTTGGCATCCTCTCTGGAC 35864 29 96.6 32 ............................A ACTGGGGCCCCCTATAGTGGGCGCGTGCCGGG 35925 29 100.0 32 ............................. GCCGGGACCTACTGACCTGGAAATGTCGCGTG 35986 29 100.0 32 ............................. GCGCTGCCGGGCGTTTCTGTCGTGGCGCGCCG 36047 29 96.6 32 ............................T GGGATTTGCGGCCATAGCGCGTTGCACTATGG 36108 29 96.6 32 ............................T GATCAGAGTACCCCTTCCGTGAGTTGGTAGAC 36169 29 96.6 32 ............................T CGACTTGTCATACTCGCCAAGATAAAGCGAGT 36230 29 96.6 32 ............................C GCGACCTCACCCCTACTCGGGTACCGCCCACG 36291 29 100.0 32 ............................. GCGCGGGCGATGGACCGAGACATCTTCTCGTA 36352 29 100.0 32 ............................. CCTTGGCCACGGCGGCGGTGACCCGGTGGACC 36413 29 100.0 32 ............................. TTGGTGGGGTTCATGGCTGCCTCCTGTCTCGG 36474 29 100.0 32 ............................. GCGGTCAGGCACTGGGATAGTGTCCTGACCGG 36535 29 100.0 32 ............................. CGGGCCGTGGCGGCCATGAATGCGGCTGCCCG 36596 29 96.6 32 ............................C TCGACCCCGAGAGGCGCGACGTCATCGTCGCC 36657 29 100.0 32 ............................. CCGATCATACGTCTACCGTCTACCGACCGTCT 36718 29 96.6 32 ............................C CCCCTAGCGGCCCGTATTCTGGCCGCTGGAGA 36779 29 96.6 32 ............................C CACTTGGCGCCCGCCTTAATGGCATTCCATAC 36840 29 96.6 32 ............................C CAATCCACGACAACGCCGACGACTGCCTGAAT 36901 29 100.0 32 ............................. TCGGGGAAAACGTGGGGGCCGCGGCGGCGGAA 36962 29 96.6 32 ............................C CCAGATCCGCCACAAGCACGCGCGTCCCTACG 37023 29 96.6 32 ............................C TTCGCGTTCTTCACGGGGACCGAGGTCGCCAA 37084 29 100.0 32 ............................. GAGGGGCGAGAATGACTGTTGTCCTGGCATAT 37145 29 100.0 32 ............................. CCGGGCCGTGGTGCTGTCCGGGCGAGACACGC 37206 29 100.0 32 ............................. AGCGCCGCGTTGAGCGCAGCACCGAGGTCACC 37267 29 96.6 32 ............................T GATTTCCGTGATGCACGCGGCGGCGGCAATGC 37328 29 96.6 32 ............................T GCGGCTCCTTCTTGGAGACCGCAATATGCAGG 37389 29 100.0 32 ............................. CGCCGTCCCCGTGATGGCGCGCAGCCCACCGG 37450 29 100.0 32 ............................. GTCCACCGCACGAAGAGGGGGCGCTGCTACGT 37511 29 100.0 32 ............................. ACGGCGACCGTCGCTGGGCCCTTGACGCCATC 37572 29 96.6 32 ............................A TCGTCGTCGATGGTAAATCGGGTGCCGGGGAT 37633 29 96.6 32 ............................T GTCAGACAGGCGGGCATTCTCGGACATCCTCA 37694 29 100.0 32 ............................. TTTCTGCCGGTGCCGCCATGCCCTGATGGTGG 37755 29 100.0 32 ............................. GGTAATGGCAGGCATTACCGGAATGGGGACTA 37816 29 100.0 32 ............................. TTCGGGCAATATCCACCATGGCCAGCCCGTAC 37877 29 100.0 32 ............................. GAGCGCGGCGACCCAGCGGCTAGCGTCCTGGT 37938 29 96.6 32 ............................T AAGCCATTTTACGAACGGCGCGCGTGCCTGAA 37999 29 100.0 32 ............................. TGTCCGTCGCGGGCACCTCGCCGGTCTTCTCC 38060 29 96.6 32 ............................T GATATTCAGGAAACGGCGGCTCATTACGCACC 38121 29 96.6 32 ............................T TCGGTTGGGGCCTTCTCGCATGCTGTGCTACA 38182 29 96.6 32 ............................T CTGATCGTGCATATACGAATATGTGACGCTCA 38243 29 96.6 32 ............................C CTTGCAGTGTGCGGCACGCATCAGAGACTCCT 38304 29 100.0 32 ............................. ACGGCGGGGGTCTGGTTGGCGGCGGCGGGGTT 38365 29 100.0 32 ............................. TTCGGCCGGGGCGTTCGCGTCTCGGCACAGGA 38426 28 96.6 32 ..............-.............. TTCGGCCGGGGCGTTCGCGTCTCGGCACAGGA 38486 29 96.6 32 ............................T CGATGGGCCCCAGGCCAGTGGTAAAGCCCCTG 38547 29 96.6 32 ............................T CCGCGGCGTTCTGCGGCAAGTTGCGGCGGCCT 38608 29 96.6 32 ............................T GATGCTCAAGTCACGCGCACGGCTACGCACGA 38669 29 100.0 32 ............................. GTATTCAAGGCCGATATGTCATATATGGGCTG 38730 29 100.0 32 ............................. GCGCCACGCCCGTGACGAACTGCCATTCCAGG 38791 29 96.6 32 ............................C CACCACGGGCTCACCACCGGCCATGGGAAGTG 38852 29 96.6 32 ............................T TTGTCATGCGCTCATAGTGAATATTGTCGGTG 38913 29 96.6 32 ............................T ATGTGACACTCACTGTTCCGTGATCCGTTGAA 38974 29 100.0 32 ............................. GCCCCAACCAATTCGGTTGGGGCCTTCTCGCA 39035 29 100.0 32 ............................. CGCCGGGCCCAGCCGACGTCGCCCAGGGGCTC 39096 29 96.6 32 ............................T CTTCCAGGTCTTATCCGGAGTAGGTTTTCCAT 39157 29 96.6 32 ............................C GGTAAGAGCAATGGCGGGCAGTTGGAGGTCAC 39218 29 96.6 32 ............................C GGCTCATCGAGCGTTGCCCTCAGGGCGTGATC 39279 29 96.6 32 ............................T TCGGCCGCGGCGTGCGCGTCTCGGCCGAGGGC 39340 29 100.0 32 ............................. GCCAGGCGCTCCGGTACCTCGTGAGGGAGGTA 39401 29 100.0 32 ............................. CTGATCGACGCCGCGGCTCACCTCATCGCACG 39462 29 100.0 32 ............................. TAAAATTTGAGAGTCATGCCGAGAATTTCAGC 39523 29 100.0 32 ............................. TCCTGGGACCTCGGTCCTACGCCGTTCATCGC 39584 29 96.6 32 ............................C CACTCCTTGATCGAGGACAGCCACTTGCCGGG 39645 29 96.6 32 ............................C ACCATCTCCTTCTCGGTCACGCCCACCACCTG 39706 29 96.6 32 ............................C AAACCAGCAGCCCGCAGCCGCAGAACCTCAAC 39767 29 96.6 32 ............................C AGCAGGGCTAGCTCCCGGTCCGGCGCGGCTCC 39828 29 96.6 32 ............................C GCGGGCTTGCACGAGGAGAGTGGAGTCCTGAC 39889 29 100.0 32 ............................. GGCGCTAGCAAGGCGCTAGCAGGGCGTTAGCG 39950 29 96.6 32 ............................T CGTGCGTGTACGCGTGTGCGATAGGCGTTTTT 40011 29 100.0 32 ............................. GCTCAGCGTGAAAGGAACCTCCATGGAACTTA 40072 29 100.0 32 ............................. ACCTCAGGCGGCGGCAGTGCTGGGGAGCTCAT 40133 29 100.0 32 ............................. GCGGCGGCGGCGGCCTTCGTGACCGACTACCT 40194 29 96.6 32 ............................T GCTGCACAATGGGTGCGACCGCGGCGCGATAG 40255 29 100.0 32 ............................. GTCAGCGACGGCTTCGCCACCGTCAATGCCCA 40316 29 82.8 13 ..................C..C.TC...A CCGTCAATGCCCA A,A [40331,40335] Deletion [40358] 40360 29 100.0 32 ............................. TGGCAGGAGGTGCTGGGTAACGGGAAGGTCTC 40421 29 100.0 32 ............................. TCATGGGGCGACTTCCCTATGCCGCTCTGGGA 40482 29 100.0 32 ............................. CCCGCAAACCAAGCCCCGAACACCAGCCCCCG 40543 29 96.6 32 ............................T CTGGGGATTGTATAGAACTATATTGAATAGAC 40604 29 96.6 32 ............................T ATTATACGTCTACGTAGTTTCAACAAAAGGTT 40665 29 100.0 32 ............................. CCCGCTAGGCGTGATCATCGTCACGCCCCGTG 40726 29 96.6 32 ............................C CTGCTCTAGGCGGGCGGTCGCCAGGACGGGGC 40787 29 96.6 32 ............................T CGTCCCAACGGGTACACCCCCACGCATCATCA 40848 29 96.6 35 ............................C CCCCCCCAGCTGCGGCTCTACGCCCTGGGCGCCCT 40912 29 100.0 32 ............................. CGAGCAGGAGGCCGTCACTCTGCGACGCGGGA 40973 29 96.6 32 ............................C TCATCACGCCGCCCCCTTCGGGCCCCGCTGGC 41034 29 96.6 32 .........................A... CCTCCGCGAGGTGCCAGGCGGCATCCTCCAGG 41095 29 96.6 32 ............................C TGGAACCAGCTGGCCGACGCCATCCCGGGTGC 41156 27 79.3 0 .........A....--..A...C.....A | ========== ====== ====== ====== ============================= =================================== ================== 96 29 97.9 32 GTATTCCCCGCCCACGCGGGGATGAGCCG # Left flank : CCGGATGTGGGCGACCTGGTGCTGTGGTCCGAGTTGGGCACGGTGAGCAGTGGCGTGAACTACGCGGAGGCTGAGCCGGAATGATGACCTTGGTGCTCAGCGCCTGCCCGGCGGGGCTGCGGGGCGACCTGACGAAGTGGCTGCTGGAGATCAGCCCCGGCGTGTTCGTCGGGCGGGTGAGCGCACGCGTGCGCGATCAGTTGTGGGAGCGGACTGTGGCGCTGTGCAAGGACGGCCGGGCACTGCTGATCTTCAGCGCCGCCACTGAGCAGGGATTCTCCTACCGGACTCATAACCACGAGTGGGAGCCGGTGGACTGCGATGGCATGCTACTGCTCCGCAGGCCGACCCAGCCGACGAAGCAGGTGCGGCGCACGGGCTGGAGCACTGCCCGCGCCCAGCAGCGCTCCCGGCGGCCCCGGTGGGCAGCGCCACGTCCCGCCGCGACCAAGTCGTACCAGAACGAGTCGGATCCCGGGTAGACTCGCAGGTCAGCAAGT # Right flank : ATCGCATCCTCGCTGATCCACCTGAGCCGAGGCGCGCTGCACGCCCAGAAGGCACCAGCGCTGCCGGGAAGAAGTGCGATCCTTCCCGCGCTCCCCCTGCCACCGCAACGTCAGCGCCGCCCACCGGCCCCGGCAGGCGCTCAGCGCACGGCGCCGTCCGGCCCGGGAGAGTGCCCCTCGCCCTCGTTCTCCACGCCCTGGCTCCCGGGCCAGCCGGCACGGGTGCGCTCCAAGGAGCCGGCCAGGGAGTCGGAGAGCTCAGTCATCCGCTCAGCATTGATGACGATGCGCCTCGGGTCGGACAGCCACATCCACACCGCAGCCACCACCGGCAGCACCGCCGGCAGGTACCACAACCGCGCCCCTCCCTCAGCCCAGGCCGAGTACTCCAGGCCCGACATCGGGGCGGACAGGGTCAGGGTGCCGATGAGCAGGGCCATGGTGGCCAGCGCGGCCAGGCTCATCCACCCGATATTGCGCATGCGCCTGCCATTGTGGGC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCCCACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 260-79 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQZC01000031.1 Actinomyces bowdenii strain OH5050 scaffold_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 259 37 100.0 35 ..................................... CTGCTGGCAGCGTGTGGCGCAGCGGTGACGCTACT 187 37 100.0 35 ..................................... ACCTGACTAAACACCCTCTTACGATTCTTTGCTCC 115 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 36 GTCTCAATGCACCTTATGGCGCGAGGTGCCTTCTGAC # Left flank : GAGGCGATCACCGAGATTATGGGCGCGTCCCAGCCCACGACCTCACGCACGATCGCGGTGATCACCCGGATCATCACCAGAGTCCTGGGCCCACTCCTGGCTACCGCCGAGAAGGTCCCCGCACCGGGAGGATGCACATCATCGATGGGAATCTTCTGCCGCGGGTGGAGCTGGAAGGATCAGCCCGCACTGTTCTCGGACAAGCACAAGCACACAGGCCTGAACCTGCAAGTGCTGGTCAGCCCACCGGGCGCCTGCTATGGGCCTCTGATCCCCTGCCATATGCCACCCATGACACCAAGGCCATCGCCGCCTCAGGCATCCTCGAGTACATGGCCCCCTCTTGCCGCCTCGCCGACAAGGGCTACACCGGAACCGGAGCCACCACCCCCTACAAGAAGCCCCCTAAAGGCCAGTTGACCGAGACCCAGAAGCAGGCCAACAAATCTAGCCCTATACACCTACACCAACCCCTGAATAACCTTCTCAGACGTGGATAG # Right flank : CCCACCCCTCGAACCACCCCCTGTGACCAGCAGTGATGCGAGGCGCAGCGCAGGCGACCCGTCGGCACCCTCCAGACCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATGCACCTTATGGCGCGAGGTGCCTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 1267-803 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQZC01000047.1 Actinomyces bowdenii strain OH5050 scaffold_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1266 37 97.3 34 ..............T...................... CTGCCTGGGGGGTCTTGGGATGCTTCATTGGGGA 1195 37 97.3 34 ..............T...................... CCTGCGACTGGTACTGATTGTAGATATCGATGAC 1124 37 100.0 34 ..................................... GCAACTCCTTCAGCCTAAACGCGCCCTCTGGGGT 1053 37 100.0 35 ..................................... CGGGGCACTGGGCTCCGAAGGCTCCGGGGTGGGTG 981 37 100.0 32 ..................................... ACGGTGACGAAAAACTCCGCTCCGTGGATCTG 912 37 100.0 35 ..................................... GCAGAGGGTGTTGCATCTGGATCTTTGATATAGAC 840 37 86.5 0 ..........G..T........C............GG | G [809] ========== ====== ====== ====== ===================================== =================================== ================== 7 37 97.3 34 GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Left flank : GGTCTGGAGGGTGCCGACGGGTCGCCTGCGCTGCGCCTCGCATCACTGCTGGTCACAGGGGGTGGTTCGAGGGGTG # Right flank : GGCCGAATGCCGTCCTCGTTCAGCGTGTCATTGAGATCAGGAACTAGTGCGTCGTGCCCATTGCGGCCTCTTGCGAAGAAGGGAGAGATCGTCATGATGTCGCCGCCACGTCGGCGTCATTCGCGCCGGGTGCGCTCCGACAGTGCCGAGAGCCTGGCCAAGGAGGCCCTCAGCCCGCAGTTGCGGATCTCGGGCCAGTACCTCGGCGTGTCCCTGTCGGAGTTCCAGGCGTCCCGAGTCATCGACTCCGTTCCGCACCACTCGGAGCAGGACGAGCTCTTCATGAGCGCTACCTCCATCGAGAGCCTGAAGAGGTCCTGGCGTGTCGTCCTGGCCCGCGATGCCCGTGATGGCGAGCTGCGCCATCAGACCGAGCAGATCGCGGGTCACCTCGATGAGGTGCTGGCCGAGCTCTCCCGATCCCTGCGGGACGGCACCTTCCGGCCGGCGCCCCTGGCCCAGGTGCGCCTTCCCAAGAAGGAGGAGGGCGATTACCGCAC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Alternate repeat : GTCAGAAGGCACCCTGCGCCATAAGGTGCATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //