Array 1 19729-21647 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCS01000008.1 Lactobacillus acidophilus DSM 20079 = JCM 1132 = NBRC 13951 = CIP 76.13 strain DSM 20079 Scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 19729 27 100.0 34 ........................... TAAGAGAAAACGGTGGTTTCCTCTTATTTTTATG 19790 27 100.0 34 ........................... TAAATCCGGACAACGCTTGCCACCTACGTATTAG 19851 27 100.0 34 ........................... TCATTGAGACACACATTGCGACGACTAAACTCTG 19912 27 100.0 34 ........................... TTTTAATGAAAGGTGCTAGTTTTGTGACACTTTG 19973 27 100.0 34 ........................... TGATTTTCCAGATTCGGCTACTATTTCGGCAGAG 20034 27 100.0 34 ........................... CTTAGGCTATTCCGCACACAATATGTGGCGTGGG 20095 27 96.3 34 ..............A............ TGACTGCAATGCAAGCAAGAGCGGACATAGCAAG 20156 27 100.0 34 ........................... CGTCATAAATTAGCTTTCTGCCCTTTTGCGTCCG 20217 27 100.0 34 ........................... TGCTGCTACGAGCGCTTTTGGTCACATTAAAGAG 20278 27 100.0 34 ........................... TCATTGATGCACCGGTACTTAACTCAAATCAAAG 20339 27 100.0 34 ........................... TGACTACGATATTTTCTTTTAATTATATCTTGGG 20400 27 100.0 34 ........................... CAATATCATCAGCATTTTTCACACCAGAAAATAA 20461 27 100.0 34 ........................... CGATTTGCGTGGCAAATGAATGGTTGATCTTGAA 20522 27 100.0 34 ........................... TATTCTTTTTCACTATCAAAATCAAATATTTCTA 20583 27 100.0 34 ........................... CACAAAAAAGCCACCTAGAAGATAAAATTCTTCA 20644 27 100.0 35 ........................... CCTTAACTAGTGCAAATTTAATATTTGGATAGCTA 20706 27 100.0 34 ........................... TGTTTACAACATCATGGTTAGAGCAAAACTTGTA 20767 27 100.0 34 ........................... TATATACATAGTTGTTTGTTTCAAAAATTGCCGA 20828 27 100.0 34 ........................... TATATACATAGTTGTTTGTTTCAAAAATTGCCGA 20889 27 100.0 34 ........................... CTTTGGCCATCTTCGGTCTTAAACTTAGCTAAAA 20950 27 100.0 34 ........................... CGGGTAAACAAGTCAGAGTTACTCGCAGCAAATA 21011 27 100.0 34 ........................... TTAGGCGAAACCCCGAGAGCAATTTCAAGCACGA 21072 27 100.0 34 ........................... TAAAACGTTGAAGCTTATTGTCCGCTTTAACGTA 21133 27 100.0 34 ........................... TGGGTACCGAGGGTGGCAATATCTTCCTTATTTA 21194 27 100.0 34 ........................... TATATACATAGTTGTTTGTTTCAAAAATTGCCGA 21255 27 100.0 34 ........................... CGGAATGTATGATAAAAATTGGCTATTTGCCTAA 21316 27 100.0 34 ........................... TATTGATGCAACACCTAGCGCAAGTCAACCTGGA 21377 27 100.0 34 ........................... CAGGGTGGTTTTAAGTACGAGATTGACTACGATA 21438 27 100.0 34 ........................... TGGCGAGAAGCTTATGAAGATCCTAGGAAAAGGA 21499 27 100.0 34 ........................... TATATGCGACTTATTTCTTACGATGAGATTCCAA 21560 27 92.6 34 ...........A.A............. TCGATGGTAACTCTGTAGCTTTTAGAGCCTTTTA 21621 27 74.1 0 ....T..T.T.A.A........A.C.. | ========== ====== ====== ====== =========================== =================================== ================== 32 27 98.8 34 TTTTCTCCACGTATGTGGAGGTGATCC # Left flank : CGTGGTTGTCTGCAGCAAAGGCTATCCAACGCACCCAGCACCTAATGTTAAGATCGGCAAGCTGCCTGAAGGTGCTAATACCTATATCGATTACGCCAATGTTAAAGGTGATTTGGAAAACTTGACGGGTGATGGTGGCCGCTTGTTCATGGTGATTTCGGAAGCTGACAATTTAGTTCAGGCACAAGACAATGTTTATTCTTATTTAAGTAAGCTTGATCTGCTGGATTGCTTCTACCGGCATGATATTGGTAATCGTGCTTTGGGAGATTTTAATATTATATAATGTCTTAACTTAATGACATTGATAAGGCTACCCATATTTTGTTTATTTGTAATCCTGTGAATATAATAGCAATTTAAAATTATTATATGAGCTAGATATATGTAGAAGAATATTTGATATAATTGTGTCGATGATTTGGTTGGGGAAATGCAAACTAAAGAAATTTTGCTTTTTAGTAAATTTAAAATAGCTTAACGATGGGATTCCTTTAGTG # Right flank : CTGAAGCACAATATTTTTAAAATAATTGGGCAAGATTTTCTCCAAAAAAGTGGAGCTACATTAACGCAGTGAAGGAAAGATCACAAGAAAAAGTCCCTAATCAGGGCTTTTTTCTTTTCCAAAAACAACATGCTGAAATAGTGTACCGTAAACTGGTAAAATAGATAAGTAAACATAGATCAATTAATAAATAAGGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATAGATGGAAATTCAGTTGCTTTTCGTGCCTTTTATGCTTTGTATCGGCAACTTGATCGCTTTACTAGTCCAGATGGGTTGCACACTAATGCGATTTTTACCTTTAAAAACATGTTGGATGCCATTCTTAAACAAGTAGATCCAACTAATATCTTAGTTGCTTTTGATGCGGGCAAAGTTACTTTCAGAACTGCCATGTATAAAGACTACAAGGGCGGCAGACAGAAGACACCTAGTGAATTGCTTGAACAAATGCCTGTTATTCGTGAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //