Array 1 278265-278751 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYX01000001.1 Listeria innocua strain Lin13-004 Listeria_innocua_Lin13_004_Contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 278265 29 96.6 36 ..............T.............. GGCACTAAGCTATCTTGGTATGATAACCGGAAGGGC 278330 29 93.1 38 ..............T.A............ TTGGATTATCAGCATTTTATTAATCATTTGGGTAAAGA 278397 29 100.0 36 ............................. TGACAAAGTATCCGTGCACCAATTCCCCGTTATCTA 278462 29 93.1 37 ..............T.A............ ACAAGACGCATACAACTTTAGAGGTGAGCGAAATCGA 278528 29 100.0 36 ............................. TGGCATTATTTTATCTAGTGAACCGGAATCTAAAGT 278593 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAACTA 278658 29 96.6 36 ..............T.............. GTTTTAGCCCGTGCTGTTAAAAAACTGACTATCAGT 278723 29 72.4 0 A.....AG......TCA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 94.0 37 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGTGTACGTGCCACAACCTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATATCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGGAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAATATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTTCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATTGAACTTAGTTTTTCACTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTATCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCAACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6427-5336 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYX01000004.1 Listeria innocua strain Lin13-004 Listeria_innocua_Lin13_004_Contig04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6426 36 100.0 30 .................................... TTCCCACTTATAATAACTAACGGGGGTCAA 6360 36 100.0 30 .................................... TGACCGAGAATATATTATAGCTCCACTTTT 6294 36 100.0 30 .................................... CGCGGATGACATCAACCGTCTAGTAGATGC 6228 36 100.0 30 .................................... GTAGGTCAGGACTGTAGTGAATTTCTCCTT 6162 36 100.0 30 .................................... CGCGTGAACTTCATCGGCTAATATGATATA 6096 36 100.0 30 .................................... TGGTTATATAGCAAATAACGATGTAGAACT 6030 36 100.0 30 .................................... GTACCTATTTGCTCTTTCTTCGAATTTTTC 5964 36 100.0 30 .................................... AGTGATGGCGAAAAACCTAACATCGGGAAT 5898 36 100.0 30 .................................... ACAAAAAGAGAAAGAGCGACTTGGAGCAGA 5832 36 97.2 30 ...............A.................... ATTAAAAGGTGACTGGGAAATGGTTTGGGA 5766 36 94.4 30 ..............C.....C............... AGGATATTTAGAATTGTGGTACGAAAAAGA 5700 36 97.2 30 ..........C......................... TATCACGCATGTAGGTATTGTTACTGGTAA 5634 36 100.0 30 .................................... TAATGGCTTAGCGCTCTGTATGAGATAACA 5568 36 91.7 30 ..........C.............CA.......... CTGTATGCTGATATAAATTAAAGTTTCCTT 5502 36 97.2 30 ..............C..................... TTAACAACTAGTTCAACTAACGAATATAAA 5436 36 97.2 30 ............A....................... AGAGAGGATGAACTCTAAATAATCGGAAAT 5370 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 97.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGCAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTTGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : ACATCTCTCAATCTACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAGAGGCCCCAACACATGACACAATACCACTACCTCGCCTCAAAAGTAGCGTTAAAAAATAAGACAGATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACTTGCAATTTCCAAGTCGCTATAAGTGAAGGGGAATTACCGTTAAAAGGCGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTACATTAAAAAAGCTAGTAAAGAAAGTGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTCCCTCTGACGAATAAAACAGAATTAGCTATAGAAAATTTAACGCCAGAAAATTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGACATTTACATACACC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //