Array 1 35888-36525 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRK01000053.1 Lactobacillus crispatus strain UMNLC21 SNF2W1B3L3S29167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35888 29 100.0 32 ............................. GTCAATGCAATTACTTATAAAGAAGTATTTCC 35949 29 96.6 32 ............................C GACCGACATTTCTTTTTTAACGCCTTCAAGTG 36010 29 96.6 32 ............................C TCCTCGTTAGCTCTTTGATCCTTTCGGGATCA 36071 29 100.0 32 ............................. CATTCAAAAATTTATGATGAAGCTAAATTCAA 36132 29 96.6 32 ............................C CAAAACGTCCAAACCAACTTGCAAATGTTTAG 36193 29 96.6 32 ............................C CAAGCTGAACATTTTGTTGATTATAAGTGTCA 36254 29 100.0 32 ............................. AAAAGTGGGCGATTGGCTTACTCGCTATTGAG 36315 29 100.0 32 ............................. CAATCACTGGTGAAACTTATGTCACTGATCAA 36376 29 100.0 32 ............................. GTTGGTGCATTAATGGAAGATGCATATTTAGA 36437 29 96.6 32 ............................C AAGGCTGTCAATATCACCGTTCCAACGTGGCT 36498 28 86.2 0 ..............C.......-C...T. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AAAGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTGGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAATCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : TACTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAGAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACTTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1544-843 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRK01000001.1 Lactobacillus crispatus strain UMNLC21 SNF2W1B3L3S2911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1543 29 100.0 32 ............................. ACTTGATCGCAATTTATTTTTATATCCGTCTG 1482 29 100.0 32 ............................. AATTGCGTTTGGTTCCGCTCCGAACTTACCTT 1421 29 100.0 32 ............................. ATAACCACCTAAAGTACCAGTACCTTCAACAC 1360 29 100.0 32 ............................. AGATTAAATCCTTATCAGGTCGTTGTATTGGG 1299 29 100.0 32 ............................. TTCTTTCATTTAAATACCTCCTGTTTTGCATA 1238 29 100.0 32 ............................. TTAATCCTGATTGGGTAGCGGATATTCATCCA 1177 29 100.0 32 ............................. ATCCTGCTTGCTTGGGCGCTTAATTCTCTTGA 1116 29 100.0 33 ............................. AATATCCGCCTATTCCAAACTGCCAAACATACA 1054 29 96.6 32 ............................C TATTCATTTAAAGCAAGGTGCTAACTTATTGC 993 29 100.0 32 ............................. ACTCAAAAAGATGTTATATACACAATGGAATA 932 29 100.0 32 ............................. GGTAGGGGTGGTCATATACTTTATGTGTGAGT 871 29 86.2 0 ....................T..AT.G.. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTTGCGGATGTTTAGAAAAAGCGGTTAATTCATGAAGCAATTGAATAAAACCAGACAGTAGAATTCGACTTGCTTACATCAATTCCAAAAGTAACTTGCATAATATAACCCCCTAAGCTCAAGTAGTAAAACGTATTTACTTAAGAAATCAGATCTAATTTTCTAAACTCGACATCTAAGTGTCCACATTCTTCGAAGATACTATTGAAAACTTAAGTAAAACTGCCAGTTTTGTATACGACATCAAGTGTCTAAAGACCTCAGGGCATATCGTTTTACTACTACTTTAATTCTACAAAAGAATAAAAATAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATATTTAGGGAGACAAGAAAATTCTGTTGTTGTGTGACTAATGGGATTAAAATAGATACAATAGTAATGACAAAGTGATGAAATTTTGGGATCTATCGTTTTGTGATTGTTGTTATATCAGGATTTGTTTACT # Right flank : ATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGAAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGTACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGTGCAAAGAAAACACGGAAAAGATTAATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTGCTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25308-23019 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRK01000001.1 Lactobacillus crispatus strain UMNLC21 SNF2W1B3L3S2911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25307 29 100.0 32 ............................. ACTTTGTAAATTAATATCTCTATTAAGTCTAG 25246 29 100.0 32 ............................. CCAATTTACGATTGGATCAATAAGAAATGGTA 25185 29 96.6 32 ............................C TATTTTAGGCGCTTATACAGCGCAAAATTATG 25124 29 100.0 32 ............................. ATTATAAGAAGTATTTTTATTAAAATCATCGG 25063 29 100.0 32 ............................. GTCAATGATTTTATTCTCAAAATCAATATCAG 25002 29 100.0 32 ............................. ATAATGGTTTACCAGATACTCTAAAAAGTTCT 24941 29 96.6 32 ............................C TAAGTTTGTCAAATTCACTATTTTTACCAATT 24880 29 96.6 32 ............................C AAAATATTTAGCAGCATGTCCAGAAAATGCTT 24819 29 100.0 32 ............................. AATTTCATTAGCAAGCGGTCTTCCGTTTCTAT 24758 29 100.0 32 ............................. ATTGTTGTGAGTTTGCATGCCATCTGGTACTA 24697 29 100.0 32 ............................. ATCCTTGTTATACTGTTCAATGTAAGTTAAAT 24636 29 100.0 32 ............................. ATATCTACTCGGCTGGAAACAATCCAAACCGG 24575 29 96.6 32 ............................C AATTCTTCCAGTAACCGGCGCAGCAACATAAG 24514 29 100.0 32 ............................. AACTCAATTAATAATGGTTTGTTAACTCCTTA 24453 29 100.0 32 ............................. ACCACTAAATGTTGGTTAGCAAGTGGTGTAAA 24392 29 100.0 32 ............................. CAGAAACAAGGTTCAATAGATGTATACACCTA 24331 29 100.0 32 ............................. GCCGTTCTTTATTGCAGTAAGGATTTAATTTG 24270 29 96.6 32 ............................C CAAATCGTTGACGGCAATTTAAGTGTGATTGG 24209 29 100.0 32 ............................. AAGTTAACTTAACATCACTATCAAAAACATCT 24148 29 100.0 32 ............................. GACGCCCAGTGGAGAGCCCTCAATTTTAGTCG 24087 29 100.0 32 ............................. ACTGCAATCTTGTTGTCTTGATCTTTGTTAGC 24026 29 100.0 33 ............................. GATGTAAGAGTTCTAGTGGCCTACATTGACGAA 23964 29 100.0 32 ............................. ACTCGGCTTATTAAAATCATTCAGATACGTCA 23903 29 100.0 32 ............................. GTGTAAGGAGGTTGTTTACTAATGACTTTGGC 23842 29 100.0 32 ............................. CACGGTTGAAATGGCTAAGCAACTAGCGATGA 23781 29 100.0 32 ............................. GTATGAAGTAGTGCCCTGCAGATATGTAATAG 23720 29 100.0 32 ............................. GAGTAAGGCAGAGAGAGCACAGTACTTAGCCC 23659 29 100.0 32 ............................. CAAATACGCTATTTTTAGAAAATGGTGTGACA 23598 29 96.6 32 ............................C ATGTGTGAGCCACCTTTGCAATAGAACTTACC 23537 29 100.0 33 ............................. AACCATTTTTGTTGTGAAGGGGAATCCCGAACA 23475 29 100.0 32 ............................. AAGTTAACTGGTGGTACTTCATATTTTTGGAA 23414 29 96.6 32 ............................C TAATCCACAGCCTGCTGGTGGTGGTCAAGATT 23353 29 100.0 32 ............................. CACTTGCTCTTAATGCCAGACAGATTCTCTAA 23292 29 96.6 32 ............................C ACCAATATTAGCTGTTTTACCGTTTAAACCAG 23231 29 96.6 32 ............................C TAGCAGCCGCAATCAACCAGCACTGTAGTAAA 23170 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 23109 29 100.0 32 ............................. TTGGTGCAGTGAATGAGAAATATGGGAATGCT 23048 29 82.8 0 ...........AC....T......T.A.. | A [23027] ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGATAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATGTTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 28310-28035 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRK01000001.1 Lactobacillus crispatus strain UMNLC21 SNF2W1B3L3S2911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 28309 28 100.0 34 ............................ TCGCACAGGCTGTTAAGACTTTGCAAACCGATCA 28247 28 100.0 33 ............................ CAAGAAACGTGCCGAGCTTAAGTCCAAACAGGC 28186 28 100.0 34 ............................ TGTAATTGTTGTATCGTCGTGTGTATAACTAGTG 28124 28 100.0 33 ............................ CTCAGCACCGTGAGTGATTCCGCCATTTCCGTA 28063 28 85.7 0 .......................A.ATA | C [28038] ========== ====== ====== ====== ============================ ================================== ================== 5 28 97.1 34 GTATTCTCCACACATGTGGAGGTGATCC # Left flank : CAAGACATAAATTACCAACGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTGAAGGTAATAAAAACACGCCGCTTGCTAGAGCTTATAAAAATGAAGTGACTAATCTATGGTTATCTCAATTTTATGATTTTCCATCCTTTGTAAAAAAGATGCAATTAGGACGTTTTGTTGATAAAAAATATAACGTTTTGAACATTGCTAGTCGGCAAAATGAAATCATTAAAAAATTTCCTGCAAAATCAGAATTATCTAATTCTATGCCTATATATGCTGACTCCCTGATTTCTTTAGTAAAAGACAATATAATTTAATGAATGACCAGGCTGAAATAATTTGCAAGCACTTTGTGTAGGTTCTTTTTTATATCGATAGATATTAAAGAAACACTTTGTGTTAAAAGCAATAAAAAATGCTATGATTTTAGGTAGGGATTGTTGCTGTAGCGGGATTCATTTAGT # Right flank : GCTGCTCTGAAAAATATTTTCTATAGAGTGACTGCTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCTTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAAG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACACATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //