Array 1 4329130-4334086 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073820.1 Xanthomonas oryzae strain PXO99A-gx chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4329130 31 100.0 34 ............................... CAACCTTGCGCCCCCTGCTGGTGCAACAATCCTG 4329195 31 100.0 34 ............................... TTGGCGGAATCGGTGGCGGTGCAGGCAGTGCTAC 4329260 31 100.0 34 ............................... CCACCAACGCTAGGGCAAGTCGCCCTGCTTGAGG 4329325 31 100.0 34 ............................... GCAGTTATGTTGCCCTCAGCCTGGGTCACTCTGG 4329390 31 100.0 33 ............................... TGCAAGAGGAGCTAGAGCAAGCAGGTGCACCAC 4329454 31 100.0 37 ............................... AACAAGATCACTGAGAGGAGTTCCGCGAAATGAGCGA 4329522 31 100.0 35 ............................... GCAGTCTGTATTGCCGCCTGTCTGTCAAGCTGCTC 4329588 31 100.0 34 ............................... TCATTGTCAAAGAACAGATCAACATCTCCTTGGT 4329653 31 100.0 36 ............................... TTCTAGACAATTTTCACGGGCACAGGAGCGCTCACC 4329720 31 100.0 33 ............................... TCTTGCTCTTGCCCATGTTCTGGTTGTTCTGGG 4329784 31 100.0 36 ............................... TTGTGCTTCCTTGATCTTCTCATAGCGATTGGTATT 4329851 31 100.0 36 ............................... ACATAGTTCCAAAATTCAGCCGATTCAGGCACAACA 4329918 31 100.0 37 ............................... ATCACATTGTTCAGATCAAGGCTACCTGGCTCTGGCC 4329986 31 100.0 34 ............................... TTCTTAATCCGGTAGTCGGAGGTGGAGAACGAGA 4330051 31 100.0 34 ............................... GCAAAGTAATGACTGATGGCCGAATTGAGAGCCT 4330116 31 100.0 35 ............................... CTGATCACAGGTGCAAACCGGTTTGGTTATGACAA 4330182 31 100.0 35 ............................... TACGGGAGAGCTAGTCCCAATGATGCTCATTGGAG 4330248 31 100.0 35 ............................... TGCCTGAGCCTTGTTTGGTTTTGTACCCAGTGGCT 4330314 31 100.0 35 ............................... AGAAAATAGTTTGAAAAGGGGCTTGACAGCCGTCA 4330380 31 100.0 34 ............................... GTCATCCTCATACAACTCAGCCTGCAAGTGCCTC 4330445 31 100.0 34 ............................... ACCACACTGCCTCATCAATACAAGATCCCCGTCG 4330510 31 100.0 34 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGC 4330575 31 100.0 35 ............................... AAACACACCAAGATTTTGTGCACCCTGGAACCAAC 4330641 31 100.0 35 ............................... ACCATGAACAACCAAGTATTCGCCAACGCCACCCA 4330707 31 100.0 33 ............................... CCATTTACAGACAGGCCTGGGGGCGAGGTTGCA 4330771 31 100.0 35 ............................... ATAATCAGAATAGCCCCGGCGTTATAAATGGTGTG 4330837 31 100.0 34 ............................... CCGATCTTAAACCCGCCAATATAGTTGTTGGCAT 4330902 31 100.0 33 ............................... GGGATCGATTTGCCGGGCCTGCTCTTGCTGCGC 4330966 31 100.0 34 ............................... GGCCTCTAGTATCTTCTGTCCCCGGGCGGTGCTG 4331031 31 100.0 34 ............................... TGCGCCGCGTGTTTAACAAAATTACTGAGAGGAG 4331096 31 100.0 36 ............................... ATACAACCGCCGATTTGCTACGCTGGCTCGGCGGTC 4331163 31 100.0 34 ............................... TACAAGTACGCGCCTGCGCGCGCAGCGGCGCCGG 4331228 31 100.0 35 ............................... TGTAGCGCGGCGTTCTCTGCGTCGGTCGCTGCTGC 4331294 31 100.0 35 ............................... CAGGCCTCTGCCGGGCGTTGGAATGACCGTTCGGC 4331360 31 100.0 34 ............................... ATGAAGTCCGGCATGGGCAATAGGCTCAGCACGT 4331425 31 100.0 35 ............................... TTGCACCAGCGCGTACACGCTGTATTCGCTACCCG 4331491 31 100.0 36 ............................... CGCTTCTCCGGATCAATAGGTCTGGCGGAGTAGAAA 4331558 31 100.0 35 ............................... AGGAAACGGTCGCCATTCGGCAGGCTGCGGCGCAG 4331624 31 100.0 34 ............................... AGGCCACGGATCAGGCGGTTATTCATGTACGAGG 4331689 31 100.0 35 ............................... TTCAGCGCTGCGGACTCCATCACCAAGATGTGGTC 4331755 31 100.0 34 ............................... ACAGTGGCTGTTAGCTCCAGGACTGTGCTTGCAG 4331820 31 100.0 36 ............................... CGCAATATCCGAGACGGTGTAGTTGTGGATAGACGA 4331887 31 100.0 36 ............................... ATGGAGGAGGCAGGCCTGCATGGGCTGCAATTGGAC 4331954 31 100.0 34 ............................... CTCAGACCGCTTTTTGAGCGTGTCACTGTACAGC 4332019 31 100.0 35 ............................... CCAGTTTGCAGGCTTTTGGCCTGACTTGCGCTGGC 4332085 31 100.0 33 ............................... ACCGCAGCCCGGTAGGCCCACTATGTTGTCGGC 4332149 31 100.0 36 ............................... TTCTCTATAGGTGCCTCACCCCTCGAACGTCGGCGA 4332216 31 100.0 35 ............................... TACGAAGTGACGCGCGTACCGTCCGCACGCTCCGC 4332282 31 100.0 34 ............................... GGGCAGAACAAGGGTGGCCGCGACGCGCTCTATG 4332347 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 4332412 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 4332478 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 4332544 31 100.0 34 ............................... GCCAAGAAGACGGACACCACGCACGTTATCGCGC 4332609 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 4332675 31 100.0 34 ............................... AGAACATGAGTGTCCAAACGCCTGACGCGCAGAC 4332740 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 4332805 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 4332870 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 4332937 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 4333003 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 4333070 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 4333136 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 4333204 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 4333269 31 100.0 34 ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 4333334 31 100.0 34 ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 4333399 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 4333465 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 4333530 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 4333596 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 4333662 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 4333729 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 4333794 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 4333859 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 4333926 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 4333991 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCAGCGCAGGCTGGCC 4334056 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 76 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //