Array 1 2893-4813 **** Predicted by CRISPRDetect 2.4 *** >NZ_APHX01000152.1 Megasphaera sp. BL7 Contig152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2893 32 100.0 36 ................................ ATCAAGTACCTATACTCGCGACACGGTATGGAGATA 2961 32 100.0 39 ................................ CAGGCGCGCCGGCCTGTCCTACGGGCAGTACATGGCCCG 3032 32 100.0 35 ................................ GCCAACTGCGATACCGTATTCTGCCAATTCTGTGC 3099 32 100.0 37 ................................ GGTCCTGAGCTACATGAACGCCATGACGTCGAAGCAG 3168 32 100.0 36 ................................ GAGCTCTCCAGCTGCTGGAGCGGCATCAGCGTTGTC 3236 32 100.0 36 ................................ CCGGAAAAATCGGAGGACGACCTCTTTTCGGTCCAT 3304 32 100.0 36 ................................ TATCCTGGCCCATATGGGATGACCGAGGGCATCTTT 3372 32 100.0 35 ................................ AGATCAAGTGAGGTGCTAGGCATGGAAGAAAAAAC 3439 32 100.0 36 ................................ ATCAATGCCCGGCCTATAGCGGATGGTTATTTTCGT 3507 32 100.0 35 ................................ GACGAGTACGCTGAACGGTGTTGTCGCGCGTTTTG 3574 32 100.0 36 ................................ CGCATCAAATCCGCCTGCTGCCAGGCGGTCCATGCC 3642 32 100.0 34 ................................ GTTGATCGTGATGCAGCCGATAGGCGTCAGGGCC 3708 32 100.0 33 ................................ ATTCCTCCTAAGACCAACTGATAAGTATTTCTT 3773 32 100.0 36 ................................ GTTTCGTCATGCTATCACGCTCCTACCGTTTGGGCG 3841 32 100.0 36 ................................ AGGTTTCCCAGGACGTCGTTTGTAATCGGCGTTTTG 3909 32 100.0 36 ................................ CACCATGGAGAAATCCAACGGCCATAATGCAACAAT 3977 32 100.0 36 ................................ TGTGAGAAGTCTCTCGTCAAGTCCTTGTTTGAACAC 4045 32 100.0 34 ................................ ATCGTGTTGACCCAGCTCATGACGGTCGCCGTCA 4111 32 100.0 35 ................................ ACGGCCATAGGAGTCTGGAGTCACACCCTTATGAA 4178 32 100.0 35 ................................ TTCTTCCTTCTGAGCCAGGTAATCGATGTCGTCGT 4245 32 100.0 35 ................................ TTCTTCCTTCTGAGCCAGGTAATCGATGTCGTCGT 4312 32 100.0 35 ................................ TACAATGAGTGCCACAAGCAGGGAATCAAACCTAT 4379 32 100.0 36 ................................ CCCATGTCATCAAAGGATTGACCTGGCGCGGCGGCT 4447 32 100.0 35 ................................ GGTCATTTTAAACTCCGTTGTGCCGTCAGCGTATC 4514 32 100.0 35 ................................ GACTGACGGAGCAAGCCATCCTTTATGTTTTGAAT 4581 32 100.0 36 ................................ TGCAAATATGTTTTCCATGCCGATTTCAATAGCCAT 4649 32 100.0 36 ................................ ATGAAGCATGAGCGCAATTTACAGTAAGTTGACGAA 4717 32 100.0 33 ................................ TCCACATGAAGAGCGGTGAACGGTGCGCGCCGA 4782 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 29 32 100.0 36 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAGATGGCTACGTATCGGCTAACCTGGCCCGGAAAGTGACCGGTTTCAGCGAAGATGATTTGCAGTATTTATGGAAGGCCATCATTAATATGTTTGAATATGACCATTCTGCTGCCAGAGGGAATATGGCCGTCCGCGAACTCATCGTTTTCAAGCATGATAGTGAACTGGGGAATGCTCCAGCTTATAAACTTTTTGACACTATTCATGTCCAGAAAAAAGATGGCGTCATTGCTCCCAGAAACTATACGGACTACGATATCACTGTAGATGAAAGTAAAATTCCGGAACATGTTACGTGTACCCGGATGATTTAACCAAGCAAAAAAAGCGGTGCGAAGCAGAATCACACATAAAATATATCAGAGCTTCGCACCCGTCTTGATTTCTATAAAAATGAGCAATATCCGGATAATTGACTCAAAAATTGAACTGCTCATCAATCAGTTCGCAATATGATTGATGAGAGAGCAGATAGTGACTGAGCCAATTTGAAGGCT # Right flank : AGAAATAAGGGGGGGTGGTATGGAATATAATGGGCCCCTTGTCAAGACCACGTTCTAAAATTTTAAGAGTGGCAGTAAGCAGAATTATTCTAAGCAGCGAAGCAAGCAAAGTAAAACTCGTTGGGAACCTTGTAGCCTAATGCCTCGTGGGGCCGTATGTTGTTGTAATCATCTACGTATTGGTTAATCAGACGTCGTAAGCTCTCTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1812-1304 **** Predicted by CRISPRDetect 2.4 *** >NZ_APHX01000089.1 Megasphaera sp. BL7 Contig89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1811 32 100.0 37 ................................ TGATTGTAGTCCCGAACAATATCGAGGAACAAATCAA 1742 32 100.0 36 ................................ CGACCTGGTGCAATACTGCTTGAAGGTCGTCGGGGC 1674 32 100.0 36 ................................ ACATAAAACCATTTGAAAATATAAATTAAGGGCTGA 1606 32 100.0 36 ................................ TATTTTAGGCATATTAATTGACGTTAAAGCCCCCCA 1538 32 100.0 36 ................................ CAAAAAGAATATGAAAAATTGAATGAGTCCAAGGCC 1470 32 90.6 36 ...........TG..A................ CTGGCAAAAGGATCGGCCATAGGGATTAAGGAAGCT 1402 32 90.6 35 ...........AGT.................. TCGATGAATCGTCTATCCTGAAATCCTTTACCGGG 1335 32 93.8 0 ..T........................A.... | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 96.9 36 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TCAGAATTCTDGCTTCCATTTTCTGACCATGTTTGGGTTCAGGCCGTTTTCAGAACAGATGACATTGAATTCCTTGTCGCCTTGAAGAATTGACAGAACAATCTTGGTCTTAAATTCAGAAGTGTACTTTTTTCTTGGCATGATAGCATCCTCCAATTTTCGTTACTTAATACTATATCATGCACTCTTAAAATTTTCAGTACTGGTCTGAATTCACAGGCCCATTATAGAATTCATTGTAG # Right flank : ATGATATAATTAAATTATAAGGTACTTATGGATGTGAATATTACAGAATACTGAAAGGAGGCGTTTTTCATGGAATATGCTGAAGATGATTTTTTGATGATATCGGGGATACAACATTTTTCTTTTTGTCCGAGACAATGGGCCTTAATTCACATAGACCAAGTTTGGGCTGAAAATGTTAAGACGATGGAAGGTAACATTATTCATGAAAATTGTCATAATCCAGACTTTGTGGAGAAACGCGGAGAGCTTCTTGTTTCCCGGGGGATGAGGATATCTTCAAGAACGTTGGGGGTAACTGGGCAATGTGATGTGGTGGAATTTCGTCAAAATAATGCTGGCTGTTATTTATACGGACAGAAAGGGGTATGGCAGCCTTTTCCCATTGAATACAAACGAGGGAAATCCAAGGATATAGATGCAGATCGTCTTCAGCTTTGCTGTCAAGCTATGTGTCTGACGGAAATGTTAGGAGTGCCTATTTCAGAAGGGGCTGTGTA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //