Array 1 31237-30903 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOD01000067.1 Microbispora rosea subsp. rosea strain NBRC 14044 sequence067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31236 29 93.1 32 ..........................TT. TCCGGGACGGCCCTGACCTGGACGAAGCGCGT 31175 29 96.6 32 ................T............ CCTCGGTCATACGCCATGAGGTTGGTCACGAG 31114 29 100.0 32 ............................. TCCACGGCGACGATCCTGCGGGACATCGAGCT 31053 29 100.0 32 ............................. GCGTGACCGGGCCGAGCGGGCACCCAGAACAG 30992 29 100.0 32 ............................. TACCCGGGCCGATCCTCACCGACTTCGCCATC 30931 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : AAAGACACCCAGCCGAGCTGACGTCAACCATGTCCTGAGACCGAAGCGTCAAGCATGTCCTGAGACCACACATCGACACGAGCGAGTCGATA # Right flank : TTCGCCCTCGCCGAGGCTAAGGTGATCCCGCGCCACCCGAAGATGCTTCTGCGGTCCTTGAAAGGCCGCTGCGGACAAGCGGCTCCGCTGCCGCGGACTTCGGCATTCGCTAGGTCAAGGTGCCGTTTAATCCAGACGACTTGACGAGGCGAGCCCAGCGGGGGCTGCGGTGGAATTGCCGGGCCAGATCAACGGATCGAGGCAGAGTTCCGTCTGGGCGGCGGTTTCGGAGTGCCCACTGCCATGCTTCTTGCTGGAGGGTGCGTCCACGCAGCCCGCCGTCAGCTTGAGGCGCGTCGTTGCCTGATTTGGGTGCTGAGACGGCTGTGCGCTCCTCAGGAGAGAGTCGGCGGGCGACGCTTTGTCGTACCAGCCGGAAGGCCATTTCCAAGCCGCCGATCATGGCGAAGGCCGGCCAGGCTGCCACGGCACGACCAATGAAGGATGGCTCGGCGACGGCGACGTTGGCGGCAACGCTCGCGAGGCTGCCGACCACCAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20817-16576 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOD01000044.1 Microbispora rosea subsp. rosea strain NBRC 14044 sequence044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 20816 29 96.6 32 ............................G TTGCGGAGCTGCGGCGTCTTCCGAGCCCGGAT 20755 29 96.6 32 ............................T CCCGTCGCGATCGGGCTCGACACGAAAGGGCC 20694 29 100.0 32 ............................. ATAGGCCGTTTCATGATGGCGGTGTACTCTTG 20633 29 96.6 32 ............................G TTGTTCCGGCCCAGGCCGCCGGTGACGCGGGA 20572 29 96.6 32 ............................G CGGGTCCAGCGGCAGGCGTTGCGGCGACCCAG 20511 29 100.0 32 ............................. CCCATTCACTGAGAGAGGAGCCGGGACATGAC 20450 29 100.0 32 ............................. TGTCAGCGGTCGACGTACTCCGCTACGGCACC 20389 29 100.0 32 ............................. CTCGCGAAGTTCATGACCGAGGACGGCGAGCC 20328 29 100.0 32 ............................. TGGGTTCCGATGGAGATCACCTGTGCCAGGCG 20267 29 96.6 32 ............................G CCCCGGGGTGGAGGTCCCGGGGCTTTGTCATG 20206 29 96.6 32 ............................T GATCTTCCCCGTGTCAGGCGATCTCGTGGAAA 20145 29 96.6 33 ............................T CAGCCCGTGCTCACTCCGGAGATGAGTCGGGCG 20083 29 100.0 32 ............................. TGGGCCGGCTGCTCGTGCGGCGACTGCGAGAT 20022 29 100.0 32 ............................. CGCTCGGCGAGCTTGCCGCCGTCGAACATCTG 19961 29 100.0 32 ............................. CGCCGTGGGTTCCCTGGAGAGCGGCGGGTTAC 19900 29 100.0 32 ............................. TCCTTCAAGGCGTCGGCGGCGGTGTCCGCGTC 19839 29 100.0 32 ............................. TCCTCGCCGACGGACTCAACGGGACGGCCGGC 19778 29 96.6 32 ............................G ATGTCCTTGACCCGCACGGTGGCGGTGTTCAG 19717 29 96.6 31 ............................G CGCACCCGCTGCCCCCCTGGTGTCCCGCCTC 19657 29 100.0 32 ............................. CGCCGCCAGCAGCCCATCAGCCGTGCGGGACA 19596 29 96.6 32 ............................T CCTCGGCAGCCCGACGACTCCTCGCCGCGATC 19535 29 100.0 32 ............................. CTTCGTCGCGCGGTTGGCGAGGATGCGAGGGA 19474 29 100.0 32 ............................. TTTGACCCGGGGGTTTTAAATGGCGCGCGATT 19413 29 96.6 32 ............................G ACTCTTATCCGTGCCTGGACGGAGAAGTACAA 19352 29 100.0 32 ............................. CGGATTATCCCGGGCCGCCCCCGACCATGGCC 19291 29 100.0 32 ............................. GACACGCCGGAGATCTGGCCGGACGGGAAGAT 19230 29 100.0 32 ............................. AGGCTGGACTGGTCCAGCGTCACCTCGTTCAC 19169 29 100.0 32 ............................. CAGGCGGGTTGAGGATGCCGAGCGGAATGTCG 19108 29 96.6 32 ............................T CCTCGGGCAGCCGGCCCGCGTACCCGTCGCCC 19047 29 96.6 32 ............................G AGACCCAAGGGGAAGCCGGGGCCATCCCCGAA 18986 29 100.0 32 ............................. GAGTAGGTGCGGCCGGGCTGGTTGGTCGCGAC 18925 29 96.6 32 ............................G GGCAAGGAGGCACCCGCCAACGCCAGGCCGTG 18864 29 100.0 32 ............................. TGCTCCGCTCGATCGCGGCGAGCATCGGCTGG 18803 29 100.0 32 ............................. GGCCGATCCCCATACGACGAGACCCGCGTGGG 18742 29 96.6 32 ............................G CGCTGGGAGTCGTTTGCCCCGGAGCGCGACGA 18681 29 100.0 32 ............................. GTCCTGGAGCCCGGATCCGGCGTCGGCACGTT 18620 29 96.6 32 ............................G GACTCCCTGACCACCTTCGGCCAGTGGATGTC 18559 29 100.0 32 ............................. TGACCGACGTGGCGTAGGCGTCGCCGCCGTAC 18498 29 100.0 32 ............................. AGGCGCTCGACGCGGCGACCGTGGCCGCCGAG 18437 29 100.0 32 ............................. ATGCCCGCAGTGTGGTCATTGTGACGCGGGAA 18376 29 96.6 32 .................A........... ACCATGCTCGGCTACATCCAGGGCGTCCTCGG 18315 29 100.0 32 ............................. CGGGAGCAGCGCCTGGCGATGGACGCGATCAA 18254 29 100.0 32 ............................. GGGCCTTCCCAGGTGATGCGCCCGGCCAGCGG 18193 29 96.6 32 ............................G AGGTCGAGCTGACGCCCGATCTCGCCCGGGAG 18132 29 100.0 32 ............................. ACCACCGACGCCCCGCCCGAGGTGGTGGCGTC 18071 29 96.6 32 ............................T CATCGGGGTCCCCTCTAGGTCAGCGCGTGACG 18010 29 100.0 32 ............................. AACGAGACCTTCTCCGTGGCGATCGTCGCCAC 17949 29 96.6 32 ............................G CGGTAGGCGGTATTGCCGTCCGACCATGCGAC 17888 29 96.6 32 ............................G TACGCCGAGTAGCTGAGTGGGCGCCGGAGCCC 17827 29 93.1 32 ..............T.............G CAGCTGCTCGCGGAGCGGCCGGCGCCCGGCAT 17766 29 100.0 32 ............................. GCGTGATCCAGCAGATCCAGGCCGGTAGGACC 17705 29 96.6 32 ............................G GAGTTGGTCTCCTCCCGGCCCGGTCCTGATCC 17644 29 93.1 32 ..............T.............T GCTCTTGCCGGCCTAGCCGATTTCTCTAGCGG 17583 29 100.0 32 ............................. GAGTCCGGGCCGTCGTCGAGCGCGATGGTCAC 17522 29 100.0 32 ............................. TTGCCGAGGCCCCGCGCGGAGAACGGGATGGA 17461 29 100.0 32 ............................. GGATGGGCTTGGCCAACAACATCGTGGGCGGG 17400 29 100.0 32 ............................. GCGAGCAGGACGCCGAGCGCGACTTGAAGGAC 17339 29 100.0 32 ............................. AGCAAAGACGCGAAGGACGCGATCTACAACCT 17278 29 96.6 29 ............................A CGGGGCGACATGACCCCGCCTACGTGCTC 17220 29 93.1 32 .....G......................G AGGTTCTCGACGGTCACCCCGCCCCCGGCCGG 17159 29 96.6 32 ............................G CCCACGGACCCGGCCTGCGGAGTGGCAATGGT 17098 29 96.6 32 ............................G CCCACGGACCCGGCCTGTGGAGTGGCAATGGT 17037 29 100.0 32 ............................. CAGGCGTTCTCGTTCGGCGGGATGCGTTACCC 16976 29 100.0 32 ............................. AGGTGGGAGGACTGGAGCGGGTCGATGAGGTT 16915 29 93.1 32 .......................A....G AAGGGGCCCTCCTACGGCATCGAGCACGGCTC 16854 29 96.6 32 ............................G ATCCATTACACGGGCGGGCACGTGGACCCGAA C [16845] 16792 29 100.0 31 ............................. GGGCGGCACGAGCCAGCCGGACCCGGCCCCT 16732 29 96.6 38 ............................A TAGGCACAGATCACGCGAACGGTGCATTCCCCCTCGCC 16665 29 82.8 32 CC...G............A.........G GCGGGCATCACCGTGAGGCGGTGGACAGCGTG 16604 29 89.7 0 ..T...G..............G....... | ========== ====== ====== ====== ============================= ====================================== ================== 70 29 97.9 32 GTCGCCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GAAGATGATCTGAACCAGCTCTGGGACGAACGCCTTGGTACCGTGGCGGGCGGCATCAACTGGGCCGACGAGTCCGACCTGGCCATCAACCTCGGCCTCAACCTTGTCCAGCCAACCATGGGTGAAGACCACATCGCCGTCATCGGCCCCGAATTCGACACGCCCGGGTCATCAACATGACCGTCGTCCTCATCGCCGCTCCCGCAGGCCTCCGCGGCCACCTCACACGATGGATGGTCGAAGTCAACGCCGGGGTCTTCGTCGGCAACCCCAGCCGCCGAATCCGTGACCGACTATGGGACCTGCTTGCCACCCGCATCGGAGACGGCCAAGCCATCCTCGTCGAACCCGCCAACAACGAACAAGGATGGAGCGTCCGTACCGCAGGCAAAGACCGCTGGCGCCCCACCGACTTCGACGGCCTCATCCTGTCGGCACGCCGCCGAACCCAACCGAATGAAAACCGCCCCCAGGCCAGATAAACGCGCAGCTCAGCAAGT # Right flank : TCCTTAGGCTCCGTCTGACCGTCGCTCTCGCACGCCTGTGGGGGACGGCCATCCGGCTTTGCCGTTGGTCAGGTCCCCCGGCGAGGCGAATACGGAGTCCGGGGTTTCGGGGATAGTGGGTCGGTGACGGCTGCCTGGGACTTCAATCTGGAAACCTCCTCTCGAACATCAAGGCCCGCCACCTCGACCGGGTTTAGGTTTCGGCCCTCGAGCCCCGGCCGCAAACGCGCCTGCTCGACGGCGTTCACCACAGCCTCGTTGACCGTCATGGCCTCCAGGCCCAGCCGCGTCGCTGTACGGACGACCTGGCGTGCGACTTGTCCCGACGGCAGGTCGGCGACGATCGGGGCAACGGCCTGCAGAGCCCGCATCCGGTCTTCGGCGAACTGCAGGCGCGGGAACTGCGAAAGTTCGGCGTCGACCACGATGTCGGCGAGCGGCACCCGGCTGCGGTCCAGCAGTCGGTGCAGGGCGGCGGGACCGTCCTGCGCCAGGATGGC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30375-31441 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOD01000044.1 Microbispora rosea subsp. rosea strain NBRC 14044 sequence044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30375 29 96.6 32 ............................G ATGGACGTGCCGTTGATGTTGATGTCCACGAC 30436 29 93.1 32 ........................G...T CCGGCCGCACCGCCCGCCGTGGCGTCGACGTC 30497 29 100.0 32 ............................. CTCTCGGTCAGCGCCTGGACGATTTCCCGGGC 30558 29 96.6 32 ............................G AGATCCTCCGCGTGCTCGACGTATTCGGGCCT 30619 29 100.0 32 ............................. CGTTGCGGTCCGGCGAGACCTCCACCGCGGAG 30680 29 96.6 32 ........T.................... GGGCAGCGCAGGCGAGTCACGGCGTACCCCCC 30741 29 100.0 32 ............................. TCGACGGGTCTGATCTGCTCGACATCGTTCGG 30802 29 100.0 33 ............................. GCCGAGCCGATAGCCCGGATCACCTCAGCACTC 30864 29 96.6 32 ........................C.... TGGCAGGGCGGGTACGTAACCGCGTTCGGCGC 30925 29 93.1 32 ........................C...G CACGGCGGGTCCTGGTCGCTGCGGTCGCCGAC 30986 29 93.1 32 ..T.....................C.... GGCGTCGAGACCGATATCGAGGTGCTGCGTGG 31047 29 93.1 32 ........................C...T CGGGCGATAGCCAGGAACACGCCGGAGGAAAT 31108 29 89.7 32 ..............G.........C...G CGGTTGTCACGGTCCTTCGCGGTCTCGTAGAA 31169 29 89.7 32 ..................A...C.C.... TGGGTGCGCATCCTCGAAGTCGGCGGGGGCCT 31230 29 93.1 32 ........................C...T GAAGATGGCGAGGGCGAGGCCTGCGTCGAGAT 31291 29 93.1 32 ........................C...T ACCTCCACGGTGATGATGTCCGGCGGCAAGGT 31352 29 96.6 32 ........................C.... CTCCCGGCGATCGAGGTCCTGGCCGGCGCCGC 31413 29 86.2 0 .C.............A........C...A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 94.8 32 GTCGGCCCCGCGCCCGCGGGGATGTTCCC # Left flank : GTGCATCCAGGTCAGCCCCGAGTGCCGGACTGCCCGTGCCGCCGTCTCGTCCATCTGCTGAAAAGCCGGGGTCGCCTTCCCGCAATCATGGATGCCACAGATCCAGGCGAAGAACCGGCGCCCGCGCCCAGGACCTCCCGCCACATCCTGCAGCCAGGCCTTGGTCGACGGGGCGAGGTAGCGATCCCAGATCTGCTCGGCGACCGCAGCGGTATCGAGAAGGTGACACATCAGCAGGTTCATACGTCCTGCCGCCTTCGCGGCCGACTTTCCCCATAAAACACCCAACTGCCGTGCTACATCCGGATCCACGGACCCCAGCTCATACTCGTCCAAGGACCTCCTCCTTCACATCGTTCGTGGACCGGTCAAAACACTAGAAGCCGCCACCGACAGGAGCAGGCGATCGTCAGATAGGGTCGCCCGTGGGATCCGAACAGAGCTGAATCGAACTGAATGAAAAACGACACTAGAAGCCAAGAACCCTCTGGTCAGCAAGT # Right flank : AGTCGACGACCTGGATCTCGACCTGCGGGAGATGTCGGCCCTTCACCAGGTCGATGCATCAGTGGCTGATCAGGAGCGCCTCGTCCTTCAGGTAGCTCGGCATCAGAGGCAACCGTCAGCGCACGGCCCCCTTCTTGCGCATTCCGGCCGCACCTGTACGAGGAATAGAGCCGAGGCTGCGCGCGATCACTGCGCCACACCGCGACAATGCGACCGACAGCTCCACCATCAGCCACCCTGGAAGCCGTCGTGAGCCGAGTCCGCTCACCTGTAGCAGCCGTGTGAGCGCGGCCGCCTGGTCGGCCTTTGGTACGGCCGCTCACCCTGTGTGGTTGAGCACGTCCCGGGCGGCGTAGCCGTCGTCGGCCGCTACGGCGCGGATGGTGAGCGTGGTGGGCTCGGCGCGGCCGTCCGAGGTGTCGACTCCTCCGGCCGCGTCGACCACCGATAAGCCGAGCCGGGTCCGGAACACGACCAGGCTGGGGGCTGTGTCGTCGAGC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGTTCCC # Alternate repeat : GTCGGCCCCGCGCCCGCGGGGATGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //