Array 1 41-589 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQI01000162.1 Alicyclobacillus acidiphilus NBRC 100859, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 41 37 100.0 39 ..................................... TCAACCGCGATCCGCTCGATTGGTAAGCCCATGAGCCAA 117 37 100.0 37 ..................................... GCGGCGAGCCGTGCGCATATGCATAGCGATTCGAAGA 191 37 100.0 38 ..................................... GGATTTGCCTCTCGCCACTGCTCCACCAGGCGCGGATA 266 37 100.0 36 ..................................... ATTCGCCTCCCGACGATATGGAGTCCATAGATGATC 339 37 100.0 35 ..................................... TCTGTAAACATAGTAGTACATATTGTTTTCCGCGT 411 37 100.0 37 ..................................... GAGTCGATGACGGCGCGTGCGGTCAATCTACGGCCAC 485 37 100.0 31 ..................................... TGCATTTTGCCAGTTTTTTACTAGAAAAAAA 553 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 100.0 36 GTTACTCCGCAGGGATCGCCTGCGGCATCATTGAAGC # Left flank : AAGCGATACGTGATGGTATGGCGAAGATCGAGGACTACTTG # Right flank : TTGCTTATCCCGCTGCGGCTTTGGCGTGCGTTGACTGTTACTCCGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTCCGCAGGGATCGCCTGCGGCATCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 42-450 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQI01000130.1 Alicyclobacillus acidiphilus NBRC 100859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 42 37 100.0 36 ..................................... GAAGAACAAGATGAGTTGGTCCGAAAACTGATGGAA 115 37 100.0 38 ..................................... TTCCATCTTTCGACCGTCCAATTTTCAGCCAACGCAGT 190 37 100.0 37 ..................................... GTCTACGCGTCGTGCGATGAGCGCGAGTTCGTACATC 264 37 100.0 41 ..................................... CTCCCTACGGGCAAGCGAGTATGCTATGGGAAAACCATAAC 342 37 100.0 35 ..................................... AAGAAGAACAGGCGAGACGCTGTGCTCTTTACTTG 414 37 86.5 0 .......................A.A..T..C....G | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 97.8 38 GTAACTCCGCAGGGATCGCCTGCGGCTCCATTGAAGC # Left flank : AAGCCAACCTCCGAAAATTCGGAGAGCAGCATGCATGGCCGG # Right flank : GCATGGAGCGACGCGTTCTTTGGGATACAGTCAGGTCATGACTCTGCGGCGATCACCTGCAACTTCATTTCAACTCGCTCTGCTCTCGAAGTACAGCAGGATGCTGCGGTTTTCCATTAGACTATCTTTTGATTTATCATAGCCTCTCGGCATTGAGGTGTAGGAAAATGACATAGGCTGGGGAAAATTCCGTAAAATCACTGGGGATTGAGTTGTTTTAAGTCCGTTCCTTGAAAAAGGGTATAGCAAACAAAGCGACGACGATCCGTTTGTTCAAAAGTCATCGCTGGAGATGGTATGATTGGGGTAGTCTCAAGCTGGCAGGAGCATCGACTTCAGGTCGAGTTTGCTCTCTTGGTACCAAGCATCCATGTGTTGGCACATGGCAATGCCATAGATGCGGATGGTCCACATCATGGTGCTGCGATGCTTGGCAGCTTCGAGATGGTAATCCTCTTTTTCTCGCTTGTTACTCCGTTCGCAGGTGGTTCTACGTTTGT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACTCCGCAGGGATCGCCTGCGGCTCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 22174-21920 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQI01000054.1 Alicyclobacillus acidiphilus NBRC 100859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 22173 37 100.0 35 ..................................... ATCATCGACTGCCCAAGCGATAAGATTGCTGGCCC 22101 37 100.0 36 ..................................... CCGCAAAGCGGCAAGTTTCTCGCGAAGTTCATTGAT 22028 37 100.0 35 ..................................... GAGATGATGCAAGGTACCCTCATCGAGCTGTGTGC 21956 37 97.3 0 ...........................C......... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 99.3 36 GTTACTCCGCAGGGATCGCCTGCGGCATCATTGAAGC # Left flank : AAGCTTGCGTGGTTGTCCGTTTTTCCTCAATGACTCACGA # Right flank : ACCGACGCTGCTTGCGTATCGGATGGTTATCCTGGAGTATTCCACTATTGCCTGCCAATCTACCCCGAATTGCCTAACATCTTGCCTCTTCCGTACCTCCCATCCGTACCGCAGTCAATTTGCTCCTCAGCGTCACGCTCATCTTCCTCCTGAATAATCTCGTATGTCTATGGGTCATACTAAATTCATAAAGTTTCGGCTTATTTCTCCGTTGGAAGGTGAGAGTATTGGAACCTATCGTGGAGTCCGACGGGTTTGACGATCCGGTGCCGTTGTCAGCCCTGCAGCATTACTCCTATTGTCCGAGGCAGTGTGCGTTGATTCATGTGGAACAAGTGTTTGATGAGAATGTCTACACGATGAAGGGAAGATGGGCTCATACGAAGGTGGACGAGGAACATGTCAAGTCTGCGAACGGGCTGGAGATCCTCACTGCGCTTCCTGTTTGGTCGGATAGGCATGGTCTCGTGGGGAAGTGCGACGTGGTTGAGATGCATCAT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTCCGCAGGGATCGCCTGCGGCATCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.90,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 10165-10710 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQI01000087.1 Alicyclobacillus acidiphilus NBRC 100859, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 10165 37 100.0 35 ..................................... TTATTGAGTTTGTTTTATATTGTTTAGGTCATAAA 10237 37 100.0 37 ..................................... CTTCAACGCTTCGTTCTCAGCACGAAGCTTGTCCAAC 10311 37 100.0 37 ..................................... GGATGCAACGAGAGAGTCCATACGCTCACTTTGCCGA 10385 37 100.0 36 ..................................... CGCGAAAGACGTCTGCGCCTCATCCGGACTCGCAAC 10458 37 100.0 36 ..................................... ACGTTCGAACAGGTGATGGAGCACCTGGACGGGGGG 10531 37 100.0 35 ..................................... ACATGATTGCTGACTTACCGTACATACCGCAAGGG 10603 37 100.0 34 ..................................... AAATATGATGGCGCGCCGCCGGAAACCGTTCACA 10674 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 100.0 37 GTTACTCCGCAGGGATCGCCTGCGGCATCATTGAAGC # Left flank : CCCGATCGATTTGGGCGATACATCAGAATTATGTTCGCAGAACCTGTTACTGGGCCTGTCGTTTTTGGATATGGGTGCCATTATGGACTTGGTTTGTTTCGGCCGGAATAGCCGTCGCATGATTATGGTTCTTGCGATGGACGTAACGAACCGCTCCATTGGTTAGCGCCTGTGGGGTGGCACTGCTCGTCCACGTCTGGCGGTAGGAACGAGTACAGTACAGCATTTGTACCCACGAATGGAATCCGCGAGTTGGACAATTTTTGTGTCTATACTTGTGAGTTAACCCGTAACATATATGAGATTAGCTCTTGTCTGGCTGCCGCGCGAACCTGAAGTGGTAAGAAAATGTGGCGGAGGTTCTCGCTCTACAGAACGTGAGACTGGGGCGCCATTTGTGACAGTTTTTTGCTTACGAGGGGGATTGGTACGATGAATCTCCGCCGGGTTCGCGCAGATAACTCGAAATGCCGTACTGCAATTAGGACGAGAAAGTTGCA # Right flank : CTTGACCATCAAAAAATACACGAATGAGCAGATCACGTTACTCCGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTCCGCAGGGATCGCCTGCGGCATCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //