Array 1 217583-217065 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXW01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3348 NODE_2_length_696590_cov_64.195783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217582 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 217521 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 217460 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 217399 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 217338 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 217277 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 217216 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 217155 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 217094 29 93.1 0 ............TC............... | A [217067] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235450-233897 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXW01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3348 NODE_2_length_696590_cov_64.195783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235449 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 235388 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 235327 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 235266 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 235205 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 235144 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 235083 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 235022 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 234961 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 234900 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 234839 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 234778 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 234717 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 234656 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 234595 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 234534 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 234473 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 234412 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 234351 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 234290 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 234229 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 234168 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 234107 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 234046 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 233985 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 233924 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //