Array 1 212452-210713 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAN010000005.1 Salmonella enterica subsp. enterica serovar Derby strain LN19MPS11 YZU1514_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212451 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 212390 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 212328 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 212267 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 212206 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 212145 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 212084 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 212023 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 211962 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 211901 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 211840 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 211779 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 211718 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 211657 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 211596 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 211535 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 211474 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 211413 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 211352 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 211291 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 211230 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 211169 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 211108 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 211047 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 210986 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 210925 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 210864 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 210803 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 210742 29 93.1 0 A...........T................ | A [210715] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229913-229092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAN010000005.1 Salmonella enterica subsp. enterica serovar Derby strain LN19MPS11 YZU1514_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229912 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 229851 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 229790 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 229729 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 229668 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 229607 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 229546 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 229485 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 229424 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 229363 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 229302 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 229241 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 229180 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 229119 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //