Array 1 90727-89906 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCNY02000018.1 Caballeronia cordobensis isolate LMG 27620, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 90726 28 100.0 33 ............................ TTAGAGCGACTGAAGTTAGTGATAGATTGATCG 90665 28 100.0 33 ............................ TTGCAGCGTGCAAAAGACGAAGAATCGCGCAGC 90604 28 100.0 33 ............................ GACGCGCGAAAGTTCAACGACGCGCGCTTGTTC 90543 28 100.0 33 ............................ TTGACGATGACCGTACCGCCCGGAATGTACTGA 90482 28 100.0 33 ............................ CGCCGACGATGTGTTAGTAAGCGCCGTCGTCAA 90421 28 100.0 33 ............................ CTCGTCTTTCCTGGCAGACGGTTCTGTGTTCTC 90360 28 100.0 33 ............................ CCGCTCATAGGTCGGACCCAACGGCATCGTCAG 90299 28 100.0 33 ............................ CGACATCAGCTCTGCCGTGCTGGCCTCGCTGGG 90238 28 100.0 33 ............................ CCCGCCGACTCGCGCGAAACGCCATTCGCAAAG 90177 28 100.0 33 ............................ GTGAAAAAACAACCTGTGGAGTTTGTTGCAACC 90116 28 96.4 33 .........................G.. CACGTGACTCTGGAAGGCGAACGCTGGGACAGC 90055 28 96.4 33 .........................G.. TCCATCGCTCGCGTATCACGATGCCATCGCGAT 89994 28 100.0 33 ............................ CGTGCTGCCGATCCTGCAGGACAAGAACAATCA 89933 28 92.9 0 .....................T...G.. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.0 33 GTTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : TTCGGGGTTGCCGCGCTCATCGCGCGCTCTTGTGGCGAGCGCGCGTTTGTGTTTTAGTGGCCCGTTTTCAGACTTGCCGGAGCGTTATGACCTTGCATCGATTTGCCTTCTTCTGCGCGGCGCTGTCGGGCGCGGCCGCCCTTGCAGCATGCAGTTCGACGAGCGAGCCGGAGCTGCGCGCTTCGAAGCCCGTGATTCACGTTTCGTCGGCGCGGGCGGCGTCGGATATATCGAGTTGTCTGCAGCGGATGATTCCATCGGCGCAAGCAAGACGCGATCAAGGCTCGACGGAGTTGATGGTCGGATCGAATGCATGGCTCGTGACGCTGACGCCTTCGGTATATGGATCGGTGGTGAAGGTGCAGCAGTCGTCGAGTGACGATGGTGGCGTGCCGGAGCCGGAGCTTCGGTTTGATATTGCGAGGTGTACGACTTGAGGGGCGTTTTCTAGGGGTGGGGTTGGTGATTTGGTGTTTTGGATCATGAGGTTATGATCTAGG # Right flank : TGTCGAGGCTCGATCTGCACGCCGCACAGCGTGTTTCCTCCGCCCCCAGCGGAGCCCCAAAACAAAAACCCCGCAAGCCTGACGACTTGCGGGGTTTTCAGATTTTGGCGGAGAGGGTGGGATTCGAACCCACGGTACGGGAAAACCGTACGCCTGATTTCGAGTCAGGTACATTCGACCACTCTGCCACCTCTCCGGCTACCAGTTCATTTGACAACTTACTGGCCTTCGTGAGCCGGTCGTTGCTCAACGAAGAACGAAAGTATATCGAACTCTTCCGACCTTTCCAAGCCCCTTTTTGCAAATAGGTGTCAAACGGAAGCTGCGACTTCGATCCGTTCCGCACCGCGCATGTACGGGCGCAACGCGGCGGGAATCGTCACCGAACCGTCCGCGTTCTGGAAGTTCTCCAGCACCGCGACGAGCGTGCGCCCGACCGCCAGCCCCGAGCCGTTCAGCGTATGCACGAACTCCGGCTTGCCCTGCGCGTTGCGAAAGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 172610-174406 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCNY02000015.1 Caballeronia cordobensis isolate LMG 27620, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 172610 28 100.0 33 ............................ CTTTGCAGATCGTTCACGCGGCCCATTGCCGAC 172671 28 100.0 33 ............................ CCGCCCTTCGAGTCGATCCGTGATTCTGCGACG 172732 28 100.0 33 ............................ CGTTGTCGTCACGCACGACGCGACCGGCGCGCG 172793 28 100.0 33 ............................ GCCATCAAGTCGAAGGCGGGTTTCCAGACCGCG 172854 28 100.0 33 ............................ GCAAAAAGAGGCTGCCGCGATACGCAACCGGAC 172915 28 100.0 33 ............................ CCCGGAGCCCGCGCCGGCTGTCGACCCGCCGGC 172976 28 100.0 33 ............................ CACGAGCGGCGATAACAAGGGCTTCGATGCGTG 173037 28 100.0 33 ............................ GTGGACGAGCTGGACGCAGCGGAGGCAAGCTGG 173098 28 100.0 33 ............................ TCGCTGGCGCGACGTGGACAGTAGAAGCGGCGC 173159 28 100.0 33 ............................ GCCAAGTCTTCGCCCGGCTGACTCACTTGGATG 173220 28 92.9 33 ..........C...C............. TTTTGAGTTTTACAGCGGCGGCCAGATCGTCGC 173281 28 92.9 33 ..........C...C............. CTCGACGGTCGTCGACATCGGTAACGAGAGAAT 173342 28 92.9 33 ..........C...C............. GCGGCTCCGGCGGATCAGACAGCGGAGCCCACC 173403 28 92.9 33 ..........C...C............. CCTTCCGCTGGGTCCGACGTACGAACGAATCAA 173464 28 96.4 33 ..........C................. GCGGATTTTGGGGAAGGGCGTGCGGCTGGGCAG 173525 28 96.4 33 ..........C................. TTCGCCAATGCAGTCGGTGCCGGTGCAGTGCCA 173586 28 96.4 33 .........................A.. TCCTGTCTTCTTTTCCTCGTGGAAGTGGCTTGA 173647 28 92.9 33 C.........C................. CCGGCGCGACGGCTCACGCGTCGCAATGGCATT 173708 28 92.9 33 ..........C..............C.. CTATTTGAGGCTCATCCTAGCGTTGAGTGGTGT 173769 28 89.3 33 ..........CT.............A.. CGCCAGTCGGGATGATCGCGAAGTGATCCGATA 173830 28 89.3 33 ..........C..T...........A.. CAGGAAGCCCCGGCGCGCCTGCGTATCGAGCGC 173891 28 92.9 33 ..........C..............A.. GAACATGGTCGCCGCGTACTTCCGGTTTGTCAC 173952 28 96.4 32 .........................A.. CCGTGCGACCGCGACGACTCGCGCATCGGCGC 174012 28 89.3 33 ..........C...C..........A.. CGACGAGCGAGTTATTCAGTGCGACGTGTCCCT 174073 28 92.9 33 ..........C..............A.. CCATTGATCGGTGATGACCTTCGCATCGTGTGC 174134 28 89.3 33 ........T.C..............A.. CCAGCTATTCAACGATGACGACGTAGAAAAGTG 174195 28 85.7 33 .......T..C...C..........A.. CCATGCGGATTCCTGTGCAGTGATAGTCGACGA 174256 28 82.1 33 ..........CTC.C..........A.. GGGCGTGGACCTGCTCGCACAGAATCTGTACGA 174317 28 85.7 33 ..........C...A.T........A.. CGCGTTGATGGCGTCGGATCTCAAGGCGGCGTA 174378 28 82.1 0 ..........C..ACA.........T.. | C [174403] ========== ====== ====== ====== ============================ ================================= ================== 30 28 94.1 33 GGTTCCTCCGTGTGTGCGGAGATAGGCC # Left flank : TCGTGCGGCGCGAGGCGGCGCGCGTGTTTCGCAAGAAAGCGGTCATTCCCGCGATGATCGATCGCGTGAAGCAGGTACTGCGTGTTGACGAGAAGCGGGAGGCGGGCGATGGCGCTGGTCGTCGTGGTGACGAGTGATGTCGCGGACCGGTTTCGGGGATTTCTCGGATCGGTGATGCTCGAAGTATCGGCGGGGTTGTATGTCGCGCCGCGCATGAACAAGGGCGTGCGGGAACGGACGTGGTCGGTGCTTGCCGACTGGCACGGGCATGAGCCACGAGGCAGTGTGGTGATGGTGTGGCGGGATCTGGATGCGGTTGGGGGGATCGGTATCTCGCATCTCGGTGCGCCGCCGAGAGCGCTTGTGGAAGTCGATGGGATGTATGTCGTCAGGCGGATGATGACGGGGTAGGTGGGGTGGTTTCGTTCTTGGAAATTTGGATGGTTTTGTTGGATGCTAATGGGGTATTTGCCTTTTCTGTCATGGGGTTATGAGGGAGA # Right flank : CCCAACCACTGGCGCTTCACCCCACAACCCCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCTCCGCCAGCATAATCGTCGGCGCATTGAGATTGCCGGTCGTGATCTGCGGCATGATCGACGCATCCACGACGCGCAAGCCTTCCATCCCGTGCACGCGTCCTTCGCCATCGACGACGGCCATATCGTCATAACCCATCTTGCAGGAACACGAAGGATGAAAAGCCGTCTCCGCCTTCGCGCGCACGAACGCATCGAGCTCGGCATCGCTCTTGAGATCATCGGAAGGATGAAGCTCACGCCCGCGATATCGCGCCAAAGCCGGCTGCCGCATGATCTCCCGCGTGATGCGAATCGCATCGCGGAACTCGCGCCAGTCCAACGCATCGGCCATATAGTTGAAAAGAATGCCGGGATGCGCATGCGGATCGCGCGACTTGAGCTTCACGCGTCCACGGCTCGGCGAGCGC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGTGTGTGCGGAGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 32160-31583 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCNY02000001.1 Caballeronia cordobensis isolate LMG 27620, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32159 28 100.0 33 ............................ CGCCTTCGTCATCAAAAGCGCCTACAGCGAAAT 32098 28 100.0 33 ............................ TTGCGCGAGCAACGCAAAGATTCTAAGTTGGTC 32037 28 100.0 33 ............................ CTTTCCGGAATGCGCGCTCGATTCCGCGAGCAC 31976 28 96.4 33 ...........A................ CAAGATTCCTCGCGGCGAGTTGCGGCCGCATCA 31915 28 100.0 33 ............................ CAACGTCGGTGACGCCCTGAGCGCTGTCGATAA 31854 28 85.7 33 C.........T..AC............. CGGCGTATCGGGCACGGTGCGGCCTTCTGCGGG 31793 28 100.0 33 ............................ GTATTCGAGCGTGCAATCCATGTGCACATCGCC 31732 28 96.4 33 .........................A.. TCCGCTTGCTGAAGGGAAGCCCATGATTCGCAC 31671 28 100.0 33 ............................ CACCCGATGTAACAGCTAAACGGGCTGTTACAG 31610 28 92.9 0 .............AC............. | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.1 33 GTTTCCTCCGCGTGGGCGGAGATAGGCC # Left flank : GCACGTGAGCCCGCAACAGATCGCGGATGTGATCGGCATTGCGCCTCGCTTGCCCGATGGTTCGGATGCGACTGCGCCGAGGGCGTCGGGGACGTTGAAGGCGCATTACGCGCCGAGGACGCCGCTCGTGCTGCTGCCGTTTTCGGCGATGGAACCGCTGCTTCGTCGTGATGGCGACAAGAAAATCGCACTGGTGGCGCGGGCGTCGAGCGCGGGGGAGTGGGCGCGCGCCTCGCATGTTCACTTCGTGGCGGCGCCGGAAGATCCGCAGTCTTATGCCCGGGATCTTTATGGTTTGCTGCGGGCGCTGGATCGGGCGAATGTGGAGCGGATTCTGATCGAGAAGCTGCCGGAGACGGTGGAGTGGATTGCGGTGAATGACAGGTTGGGACGGGCGGCGGCGGCGTTTGAGGCTGAGGAGTGATTCGCTGCGGGTTTTGGGTGAATGTGAAGATCGGTTGTCGGGATTCCGCTTTTGGATCAGTTGGTTATGATCTAGG # Right flank : TCCCAAGGGAACCGCGAGCCAGCAGCACCTCGCCCTTCCTCCGCTCCTGCGGAGACAAAAAACAAAAACCGCCCGGACAATCCCTCATCCGGGCGGCTTCCCCATCTCAAAGAGAATCGCTTACTTCCCCAACCCCGACTTCGCCACCACCTGTTCCGCCGCTTGCGCGTACAACGCACCCAGATGCGTCGTCGGATGCACGGTATCGGCGTACATGTAGGTCTGATCCGCGCCTGCCACAGTCAAAGTCTCCGGCGAGCAAAACAGGGAAGTCGCGAAAGCAGCCGGGTTGGGTTCGCCGAACTTCTGCGCCGCCGCCGCCATCGCCTGCAGATTACAGGCCGTACCGGTATTCGACACCGTGAATCCGAACTGCCCAAAATTCGCCGTGACATTGGCAAGCACCGGCACGATGTCGAGATAGATCACCTTCGACATCAGCCCCGCTTGCGTCAGCGCCCCGGCAAGCGCCTGGTTGAATCCGAGCGATGCCTGCGTGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTCCGCGTGGGCGGAGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.60,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //