Array 1 7439-8090 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIA01000003.1 Suttonella indologenes strain NCTC10717, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 7439 36 100.0 21 .................................... GCGGCATACGATGAATCAGCA Deletion [7496] 7496 36 100.0 33 .................................... ACTTGCAGCTTGTATGCCTCACCTACATCGTAG 7565 36 100.0 34 .................................... GCTTTATACAGACCGTTCTCTGCTTCCGATTTTC 7635 36 100.0 34 .................................... AAACATTCTAGCGACGCTTGCCCAGTCGGAACAA 7705 36 100.0 34 .................................... CCACGGCAGGACAAGTACTGAGTTCCTACATGTG 7775 36 100.0 35 .................................... CCAGTGATTCCGCGCGATACAAAGCACTGGGGAAT 7846 36 100.0 34 .................................... AAGCGCGAAGCATTGCAGGTGGTAGGCTGCCTCC 7916 36 100.0 34 .................................... CTTAGATAAGCGAATAGCTAATCCAGGTGCTTTA 7986 36 100.0 33 .................................... TAACAATCGAACCAATGTTGCTCGTGAGCATTA 8055 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 10 36 100.0 33 GTTGGAACAACCGCCCCACACATCGGGGATTAAGAC # Left flank : AACAAACAACAGCGAAACAACATCATGAACTGGATAATCGCCTACGACATCACAGACAAACGCCGTCTGCAAAAAATCCACCGCCAACTCACAGACATCGCCATCTCATTGCAAAACAGCACCTTTCTATACCAAGGCAATGAAACACAACTCATAGAAACACTCGAACAACTCATGCAAAACCTAGACCCTAAAAAAGACGACCTACGCGCCTACCCTCTCGCCGGCAAACTCTACCGCCTAGGCAAACCCAGCCTAGGCACAGGCATCAGCCTCGGCAACTTTCCGGAAACCCCATCGCCATATTTAAAACACAAAACATAAAACACCCCTTGAACGGCGCGCAAACAGCCTTTAAAATAGCGCGCCTCAACGTTCTTCCGACACAAAGCTAAGTCATTGAAAACTCGACAGCATGAAAAACTCCTTTTGGCAAAAAAGAAATTTAGCTAAAGCGCCTTTCAACCATTTGAAAAGCAAGGAGAAAAAACAGGCAGTCA # Right flank : CGCTTTTTTGCACCATACCTTAAAACGAATATTTTCCCGCTCTCGTTTTATCGATTATTCAATCGCCAAACAAAAAAGCCGAGCATTGATATGCTCAGCTTTTTATTTGCCGTATCCATTAAATTCGGCTTGCGCGAATGCTGCCGCCAATAATGGCGGCAGATAGACTAGCCTTAGGATTTTCCCACTTGCGCCATAACAAAATCAGGCGAGATACCGCTGTCGGCGATGTAGTGGCGGTAATCAAGGTCTTTGAAAAAGCCGTGTCCGTATAAAAGCGCGGTTTTAATGCCATAGGCATTACCGCCTAAAATATCGGTATGCAGGGTGTCGCCCAGCATCAGGCAGCGTTCGGGCTGAAAGGCGATGCCACGCGCGGCGAGGCGTTTTACCACGATGTCGTAAATGGCGGGGAAAGGTTTGCCGAAGACGCGGGTTTTCTCATGCACGGCATCAGGGAAGAATAAGGCGTATGTACCTGCTTCGATAGACGATGTTTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAACAACCGCCCCACACATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 550607-548855 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIA01000004.1 Suttonella indologenes strain NCTC10717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 550606 36 100.0 30 .................................... TACGCATGGTGGCGTGTATCAAGGCTTTTG 550540 36 100.0 30 .................................... AATCTCAATCGGGTAATCGGTGGTATTGAG 550474 36 100.0 30 .................................... CCTTTTGCAGCGCATCCTGCAAAGATTTAA 550408 36 100.0 30 .................................... GCAGCGGATGGAATTGGAGCTGGGCTTGAC 550342 36 100.0 30 .................................... GGATGTTGATGTGTATGGTGGCTCGCATGA 550276 36 100.0 30 .................................... GGTTTGGCTAGGCGTAGCGGAACCCAAGTA 550210 36 100.0 30 .................................... AAACACAGAGCGAGAATGCGAAGCAGACGA 550144 36 100.0 30 .................................... GGTTTGGCTAGGCGTAGCGGAACCCAAGTA 550078 36 100.0 30 .................................... TGCGCGGCACACTTACCGCCGGACTGCTTC 550012 36 100.0 30 .................................... TAGCTTAGAGCGCGCCAAAACACATCTGCG 549946 36 100.0 30 .................................... GAGCGGTAATGCGCATTTCATGCCTAAACC 549880 36 100.0 30 .................................... TGCGCTCCACATACAGCGCCCCATTGATAT 549814 36 100.0 30 .................................... ATCATCTTGACCATCAAGCACTACCGCCAA 549748 36 100.0 30 .................................... AAGACCTCTGTTCCTTCGATATAACAGTTA 549682 36 100.0 30 .................................... AACTTCTTTGAAATTAGCCTTCACTTCTTC 549616 36 100.0 30 .................................... TTTCGTGGTTTCTTTAACAGTGCCATCCTG 549550 36 100.0 30 .................................... GCACAGGCTCGTAGAGCCCAATTCAGGTAG 549484 36 100.0 30 .................................... TATGCCGCTAAGCGCAGCGGTGCTTCGCTG 549418 36 100.0 30 .................................... CCGTCCGCTGCAAGCCGAGGCAACAAAACG 549352 36 100.0 30 .................................... CTTTGACACATGACCTATTAAATATACGAT 549286 36 100.0 30 .................................... CACACCGAGGACGGCGAGAAATACTTTGTG 549220 36 100.0 30 .................................... CGTGATGAACAGGCACAAGCGGTCATTTTA 549154 36 100.0 30 .................................... TCGGGCGTATCAGACAAGCCTGCACGGACT 549088 36 100.0 30 .................................... AACAGCAGTGATTGTTGATAAAGACTATCC 549022 36 100.0 30 .................................... TGCTGAGCAAACACAACAGACACACTTATC 548956 36 100.0 30 .................................... AAACGATTACACAAATAAAAACTAGATTTA 548890 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 100.0 30 GTTGTAGCTCCCTCTCTCATCTCGTAGTGCTATAAT # Left flank : GATAGCGCTATAGCTCATCCCGTGCGAGAACAGCGATAAGATATGATTGTCTATTTCAGGGCTGAGCTTAGTTTGGTGTTTCTTGACTAAGACAGACTCAAATTCTCCATTGCGGTCACGAGGAGTTTCAAGTTCGAAGCTGCCAAGTGCCGATTTGACCGTCTTTTTACTGTAACCGTTACGGCGGTTATTACTATTGAGATTCTGCCCAAGATAACTTTCTATTTCAGCTGATAAAGCTGCTTCAGTAAGTTGTTTAATAAGCGGGGCTAGGACCCCATCACTGCCTGTGATGGGCTTACCTGCTTGGATGGCTTTTAAAGCTTCGTTAAAGTCAAAGTGTTGCATAATGTCATTCCTTGTTTTCTGGATAGTTTATGGGAGTGACACAGTTTTTTGAACACTACCTAGATTATCACAATTGCTCTTTATTTTTTAGTGAGGTGCTTATCCCGAACTCAGGTTATAATATTAAAACTCAATTGGCATCGCATGCCTGA # Right flank : ACCCAAGCGATAAAGCTCTATTTTTATAGGCTTTATCGCTAATTTCTTGTCTAGTTTTCAAGAGCTAAAATAGCAAAATCTGATTCGCATTGACTTTTTTTTCACGCGGTTTCATTTCGCCGATTAGCATCAACATGCTCGCATATTGCTTTTCCGTAACTTCTAAACAGCGGACTTGCCCTTCTTCAGGTAAATTTTTCTGCAAGCGCGTATAGTGTTTATGCAAACCATCACGACCACGCACAATGCGCGCATATACAGATAGTTGCAGCATCTGATAACCGTCTTTAATCAAAAAATGGCGAAACCGATTTGCCGCTCTGCGTTTAGCAGCAGTCGTTACAGGCAAATCAAAAAATACTATCAAACGCATAAATTTTGCCTCACTCATAATCCTGCACCTTTAATGGCAATATTTCAGGCAGCTTTAATAATCCAGAATCGCCTTGTATCAATGCCGTTTGAAAAGATTGTACTGTTCGATCAATTGCCGACAACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTCTCTCATCTCGTAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 802598-804677 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIA01000004.1 Suttonella indologenes strain NCTC10717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 802598 32 100.0 35 ................................ ATATTCCAATATTTAACGCTGACGGTATTAGTCAA 802665 32 100.0 33 ................................ ATCGCCGCATATTTAGCCTCAAGCGTGGCAAAA 802730 32 100.0 33 ................................ TCGACACTGCGCAAAATCGGCGATTGAAACTGT 802795 32 100.0 32 ................................ TTTAAATTATGCGCAGGCTTGCGCTTCCACTT 802859 32 100.0 35 ................................ CAATACGTCGCCACCTGCTCATCGACCTTGCGCAA 802926 32 100.0 34 ................................ ATCAACATCACTTTGACCGTCAAGGCGTACAGTC 802992 32 100.0 34 ................................ CGAAAACGTCTTGCGCACATTCCAGTGTGATTTT 803058 32 100.0 35 ................................ ATACACCGCGACGTGACCTACGACAATTTATATGA 803125 32 100.0 34 ................................ GCAATCAAAGGTTTATGGCGTAACCAGTTGGGAC 803191 32 100.0 33 ................................ AAATGCGTGGAATTTGCCTTTCTTGCGCTCGCC 803256 32 100.0 33 ................................ TAATTCGTCTGGGTAGTAGTAGTCATCATCCAG 803321 32 96.9 34 ............G................... AATTTCGCCGTTTAAGGGCGGCGCTGTCGCCGGA 803387 32 96.9 35 ............G................... CGACCTACTGATGTGGTCTGGAAGCGCACCGGCGG 803454 32 100.0 35 ................................ GCCGGCGGATATGGTCGTCCCTGTCTGCCGGTGAG 803521 32 100.0 34 ................................ TGATAATGATTTTATTAATGATGAGGTGCCGTTA 803587 32 100.0 34 ................................ ATATGATGGGTTTTGATTGCGGCTTTCTGCGGAT 803653 32 100.0 34 ................................ ATCCCTTTGCCAACGCCCCGCAGGGTGGCGGCAA 803719 32 100.0 36 ................................ ACGATACACGGCATGAGGCTTTATCTCGGATGGCGA 803787 32 100.0 35 ................................ GGGCAATTAACCTCGATGGCGAAACAATATGCCGG 803854 32 100.0 35 ................................ AGTTTTGCTAGTCGATTGCAGGCAATAGCGCTCGC 803921 32 100.0 36 ................................ AGCTAGTGCCTCTTCTACCGCCGCGGTGCGCGGCAG 803989 32 100.0 33 ................................ TGCAAAACTGGATGCGACGCTGTCGCAAATCCA 804054 32 100.0 33 ................................ CCCTATTGCTAGTCCTACGGACAGCGGTCAGAC 804119 32 100.0 34 ................................ AGACGTTGTATACGAAAAAGATATGAAGGGGCAG 804185 32 96.9 34 ...................T............ AGAGCTAATCCCGACAGGCAAAGTAATCTGCGCC 804251 32 96.9 33 ..........A..................... ATCGAGGTTATAATGATTGGACACCCCAGTTAG 804316 32 100.0 35 ................................ AATTGGGACGGTCGGGCATGGCGGGCGGATCACCG 804383 32 93.8 34 ......T..T...................... ACTGTTACCAGTGGTAATAACCAATGGGAGAAAA 804449 32 96.9 34 ......T......................... AGTATATGCCGCCGAGCGGCTAGAGCTTAGAGAG 804515 32 100.0 33 ................................ TTTTACGCGTAAGCGTAAATCCGCGCATAAAAA 804580 32 100.0 34 ................................ ACCGTGACTAGTTATCGCTTTACTCCTGATATGA 804646 32 93.8 0 ................A..............T | ========== ====== ====== ====== ================================ ==================================== ================== 32 32 99.1 34 GTCGCACCCCGCAGGGGTGCGTGTGTTGAAAC # Left flank : GAAACAATCATGATGATGTTGATTACATACGATATTTCGCTTGACGATGCTGACGGACAAAAACGCTTACGCCAAATTGCTAAACATTGTCTGGATTATGGCGTGCGTGTGCAATATTCTGTGTTTGAATGTGACATCGCGCCAGACCAGTGGGTTGTGCTGAAAAACAAATTATTGGCAATCTACAATCCCGACGTAGACAGCCTGCGCTTCTACCATTTGGGCAGCAAATGGCACAACAAAGTTGAACATCACGGCGCAAAACCTGCGGTGGATGTCTTTCAAGATGTGTTAATTTTGTGATATCAATCAACCTTAATAACCATCGCTAAAAGGGAGTTCACATTAAAACCCCCTTAGCTTAGCGATAAAATAATCTCATGAATTATCTCACAATATCGATCTTGCTTAAGTCCATTTATAATGATAGTCTTTTTAAGACTTAGTTTAGCGATACCGCTGATATTAAGCCTTAGAAATCCTGCCTTTACAAAGAGGCA # Right flank : TCTCAATGGGGAGATGGGTACCGGCAAAACCATAAGTCATCCTCATAGAGGTCTGTGTTACAATTAAATATCTATAAAATTAGTAATTCAAAACATTCAATCTTATTGAGTTTATGTTTATGATAAGGTGTTTTTAAGTTATTAATTCGATATTCATGATATTAAAAGTTTATTGATGTTTATAGATTTTTATTTTGATATTGTTTTTTTGTATAAATGATATGTGAAAAAATATGATAGAAGATTTTTGGCAAGGTATGTTATTTGCAGGAAATATTATTTTTCCTTTGATTGCTTTGATTTGGATAGGTCGCTGGTTGCGAATGAGCGGTCAAATTCGTGAACAGTTTTTGCAAGATGTTAATGCTTTATTGTATCGTTACGGAATTCCCGGTTTATTATTTTTCAGTATTTTGAAAAGTCAAGAAAGTCTGATGTCGCAATGGCGTTTAGTGGCGGCAGGTTATTTGGCTACTTATTTGCTGTATTTGGTCAGTAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCAGGGGTGCGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 1680923-1680010 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIA01000004.1 Suttonella indologenes strain NCTC10717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 1680922 36 100.0 35 .................................... ATTTGTTAATGATTTTCCCTGCGCCAAGGCGTGCA 1680851 36 100.0 34 .................................... CCATAATTTGATACGAGTATCCCCACCATTCTTG 1680781 36 100.0 34 .................................... AAGCCAATTGCCAGTGATGCATTTGTGCGCCCCC 1680711 36 100.0 32 .................................... AGAAGTCTTTTACCGAAGGCATCTTGTGAATA 1680643 36 100.0 34 .................................... TTTGCAATGGGCGATTTTCTCTTTTATCACATCA 1680573 36 100.0 34 .................................... TGGTAAGTAACATCACCTTTCTTAGAGGTTACAT 1680503 36 100.0 73 .................................... GAGTTGTCCCTTGCCATTGTCAATATAGCCGGCGTTGGAAAAACCGCCCTGATGATATTGACCGTAATGGCGG 1680394 36 100.0 32 .................................... AATGCTGATATTTTTTGTTCAATATCTGGTTT 1680326 36 94.4 34 .......C..............C............. TTGACTAGTTTCATGTTGTTCTCCGTAAGTAAAT 1680256 36 97.2 34 .......C............................ AAATTTTTTCTTTAACCTCTTTTTTGTTTTTTAG 1680186 36 100.0 35 .................................... GACTTTGGCAATCCTAAAATACTCGGTTTTAGCAG 1680115 36 94.4 34 .......C............T............... GCGGCAAGGTGTAAGCATTTCGCTCCGCTTCATA 1680045 36 97.2 0 ..................................G. | ========== ====== ====== ====== ==================================== ========================================================================= ================== 13 36 98.7 37 GTTGGAAAAACCGCCCCACACATCGGGGATTAAGAC # Left flank : TGATAAAACAGATTTTATAGTCATATCCAAAAGAATATCGTAGTTTTATAGTCAATTCTGTCATGAATTGACTATATACGGTTTTTTGTTTTGGAGAGTTGAGAGGAACGGTAATATCTACCCGATTGAAAAATAATTAATTTTTCCATTAATTGACTATGCATAAGGCAGCCGACAACAATGTATTATAGTCGAAGAATTGAAAAAATATTACGGCGTTGGCTCGCCTTGCCGTACTATCTGTACTGTCTGCGGCTCGCCGCCTTGTACTACTTTTCCACTTCTCCGACTATATCTTTATTTAAACAACCATAAAAACAACGACAAAATCCTTGAACAACACATAAACAGCCTTTAAAATAGCGCGCCTCAACGTTCTTCCGACACAAAGCTAAGTCATTGAAAACTCGATAGCATGAAAAACTCCTTTTGGCAAAAAAGAAATTTAGCTAAGACGCCTTTCAACCATTTGAAAAGCAAAGAGAAAAAACAGGCAGTCA # Right flank : CTTGAGGATTATAATTAATTCATGCCAAAAGAGAACACTTAAAGCATTATATTTCTATTGTTTACGTCGATATGTAAAAGTCATGTGTTGTTTTGACATGAACTGACTATATTAATTGCACTTCAAGGTTGAAGCTAAGTTTTTAAGAAGCATCATCAAGCGCTAAGTACAGAATTGCTCCGTACTTGCCGCTTGATGATTTGGGAAAATTGCTCAATTAGCGTTTTTTAGCGCAACGTCACCAATTCTTCCGCGCTGGTCGGATGAATGGCGACCGTATCGTCAAAATCGGCTTTGCAAGCTCCCATTTTGACTGCCACCGCAAAGCCTTGCAGCATTTCGTCCACGCCGTCGCCAATCATCTGAATGCCGACGATTTTTTCCTGCTCGCCTTGGCAGATTAATTTCATCAGCGTTTTGGGCTTGTGGGCGGCGAAAGTGCGCGCCATCGGCGTGAACTGCGCTTTATAGACCTTAAGCGTATCGCCGTATTGCGCCCG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAAAAACCGCCCCACACATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.80,-6.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //