Array 1 206098-207223 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPS01000003.1 Salmonella enterica subsp. enterica serovar Enteritidis strain BCW_1509 NODE_3_length_331463_cov_0.238734, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 206098 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 206159 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 206220 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 206281 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 206342 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 206403 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 206464 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 206525 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 206586 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 206647 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 206708 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 206769 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 206830 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 206891 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 206952 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 207013 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 207074 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 207135 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 207196 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 223482-225078 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPS01000003.1 Salmonella enterica subsp. enterica serovar Enteritidis strain BCW_1509 NODE_3_length_331463_cov_0.238734, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 223482 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 223543 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 223604 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 223665 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 223726 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 223787 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 223848 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 223909 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 223970 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 224031 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 224092 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 224153 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 224214 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 224275 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 224336 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 224397 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 224458 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 224519 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 224622 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 224683 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 224744 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 224805 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 224866 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 224927 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 224988 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 225049 29 96.6 0 A............................ | A [225075] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //