Array 1 3835240-3831651 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEGA010000001.1 Variimorphobacter saccharofermentans strain MD1 NODE_1+2_length_4147987, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 3835239 33 100.0 34 ................................. CATTTAGCTACTAAACTAAAATTTGGCTTAGATG 3835172 33 100.0 35 ................................. TAACACGTTAGAGCGTGTATAAATAGGCTTTAAGC 3835104 33 100.0 33 ................................. TGTTGAGTGTCCTAATACTTTGAATGGTTTATT 3835038 33 100.0 38 ................................. AGAATGCAATGGAAAACAGATAACAGAAAAGCAAGCAC 3834967 33 100.0 34 ................................. TTCTGCGTACGATTTACTCAAATATGATTTTCCA 3834900 33 100.0 34 ................................. GATTTTTACATCTATATATTGTATTCATTAAACT 3834833 33 100.0 33 ................................. TTATTTATATCCAAGTATCTCATATATCTCTTC 3834767 33 100.0 35 ................................. CCGATATAGTTAATCATGGTGAGGAGACATGTGTT 3834699 33 100.0 35 ................................. ATGCGGTAATATATTATAATTGGAGGTAATAAGGA 3834631 33 100.0 34 ................................. AATTGACTATATCTTATCTTGATTAAAGTATATC 3834564 33 100.0 33 ................................. AAAAGTCAACTAGCCATTATAAAATAATTGTAA 3834498 33 100.0 34 ................................. GTATATTCAAGGAGGTTCTTGTTATCACTTTATG 3834431 33 100.0 35 ................................. ATTAAGTCGCCATTTAAAATGCAATATGCATTCGG 3834363 33 100.0 35 ................................. GATGATTCAGAATGGAAAGACTTGCAAATTACAAC 3834295 33 100.0 35 ................................. CTCTTGTCACGTTTATCACTCTCCAATCTGATAAA 3834227 33 100.0 33 ................................. CGGTATTGCCGGTGTTTGTTTGCCAGCAGTTTG 3834161 33 100.0 34 ................................. CGATATATGATCTAACAAAATCAAATGAATGTAT 3834094 33 100.0 35 ................................. CTGATAAATATAATGATAATAATCTTACATACATA 3834026 33 100.0 34 ................................. AATCAATGGTGATCTTGGAGATGGATCAATATAT 3833959 33 100.0 35 ................................. GGATAGGTTATGCCTTAATCCAAAAGCTATGCAGA 3833891 33 100.0 33 ................................. CCCAATGGCTCTGTCCTCGGAAGATATATTCAA 3833825 33 100.0 35 ................................. ATTTTTTATTACCTCCTAATTTTATTATTTTAACA 3833757 33 100.0 33 ................................. AGCTCCGCTATGCATTCGTAATGCAACAGACCG 3833691 33 100.0 35 ................................. TCCGAAATATGGATTTTGATCCTGAATTAGTTGCT 3833623 33 100.0 34 ................................. AAGGTTGATAGCTGCAAGAAACAAGACGATTTAA 3833556 33 100.0 33 ................................. GATATAGTTTTACAGGGCTGTGAGCTTAACCGC 3833490 33 100.0 34 ................................. TTTACTGCATCTTGTGTAATACCATGCATTTGGG 3833423 33 100.0 33 ................................. TCCGTCTGGTACACGTACCTGTATGGATTTAAT 3833357 33 100.0 35 ................................. AAAAAGTTATATAATTCATAATAGGCAAAGTCCAT 3833289 33 100.0 33 ................................. TATTTATCGCATCTATGTTAATACCACGCTGTG 3833223 33 100.0 35 ................................. TTTTAACACTAACTATGGTATAACAAAAGAATATT 3833155 33 100.0 34 ................................. TATTACTTTTCAGCTAGTGTAAAGCAGTTATATA 3833088 33 100.0 33 ................................. TGATAACGTGTGTTTAATCTGCTGATATAATAC 3833022 33 100.0 34 ................................. CTCGATTGTAAGTGTCAGGTCAGCCATATTTGGC 3832955 33 100.0 35 ................................. GTTGCGTTGCCCGTGCCATCATACGGATAAACAAG 3832887 33 100.0 34 ................................. TATCTCGTCACAGATGTATAACCTCTTTCTGGTC 3832820 33 100.0 33 ................................. ATTGTGCTATCTTTCCTAATCTGCTTATGTAAT 3832754 33 100.0 34 ................................. TTGTTATTTAAAAATTTTTGATAGTCCATTGTTT 3832687 33 100.0 34 ................................. TTTTAACTCTTTTTTCTCTGTATAAGCTCTGTTC 3832620 33 100.0 35 ................................. ATATAATGTCATATCAATTCCTCCAATCTATCTAA 3832552 33 100.0 35 ................................. ATGATAAGTTACAAGGTAATGACCGCTCTTATCTG 3832484 33 100.0 34 ................................. TTCTTAGCAAGTGGGGCGTACTCAGTATTGATAT 3832417 33 100.0 35 ................................. ATATTCCATTGCTTTTTGAAACTGCTCCGGGTACC 3832349 33 100.0 35 ................................. TATGTCTGCCATCGTTGTTACTAAATCCCCAACCT 3832281 33 100.0 34 ................................. CGGAATACGAGAAAATCAAGGATTGCGATAAGTT 3832214 33 100.0 34 ................................. GACTGTATCTACATTGAGAAAAGTGTATCAACAT 3832147 33 100.0 33 ................................. CAGACAGATATTACAGCGTTTACCTTTGGCTTT 3832081 33 100.0 33 ................................. AGCAGGGGCACAGTAAGGAGAAGAATTTTAGAC 3832015 33 100.0 35 ................................. CAAATACCTCAATCAATTCTCGATGCATCATTCGA 3831947 33 100.0 34 ................................. ACAATATGAAGTAATTGGTATTATTCCAGCACAT 3831880 33 100.0 33 ................................. TTGTACAACTGGAAAACTTGACGGAAATTTTAA 3831814 33 100.0 33 ................................. TTGTACAACTGGAAAACTTGACGGAAATTTTAA 3831748 33 100.0 34 ................................. ATGACCGGTGATTGCATATGGTAAACATTATCGT 3831681 31 90.9 0 ........................-..A-.... | ========== ====== ====== ====== ================================= ====================================== ================== 54 33 99.8 34 GTCGGCTCTCGCGAGAGAGCCGTGGATTGAAAT # Left flank : ATTTGGATGAATATCCTCCATTTCTTTGGAAGTAGGTGAAGAATGCTAGTATTAATAACATATGATGTTAATACAGAATCAAATGCAGGTAAGACAAGGCTACGAAAGGTAGCTAAACAATGTGTAAACCATGGCCAACGTGTACAAAATTCTGTATTTGAATGTATCATGGATTATACACAATGTAGGGAACTTCAAGATATATTAGAGAAAATAATCGACAAAGAAAAGGATAGCTTGAGATTTTACTTCTTAGGAAATAATTATAAAAGTAAGATTATACATATTGGAGCGAAAAAATCTTTTGATATGGAAGGACCTCTAATAATTTGATGTTAGTGCGAATGTTATGCTTACATAATAATGCCGGAGGATTCGCACCTGAAAATAGGTATTAAAATCTACCTTTGTTAGGTGATGAAACATTATACTATGGATATTTATGTATAACGTATACAAAAAATAATATTACTTTATAAGTGAGTTTGTTAAGTTTTGCT # Right flank : GATTAATCTAGAATTGATTAAGAAAATCAAAAAATTGCATATACCACAGTCTACCTTTACTCAGCTGACCGTGTCAGAGAGAACACAAACTCGGTGCCAACACCTTCGGTGCTGACTACATTGATGTTCTCGTTATGAGCTTGAATGATTTCTTTGGTGATGGATAGACCAAGGCCGGTTCCTTTTTTGTCCTTACCACGGGAGGGGTCCGTCTTATAGAAACGTTCCCAGACCTTTTTAATGGATTCCTTGGGAATTCCGATTCCATAGTCCTTGACGGACACGAATACTTTTTCGCCTTTTTCTTCTGTGGAAACCTTGATCTTGGAATTGTTGTGACTGAATTTAATGGCGTTGTCGATTAGATTGTATAATACCTGTTGGATTTTACCCATGTCTGCATCGACAAAGGTCTCTTTTGAAGAAAAGACCAGGTTCAGCGTTATTTTCTTATCCCTACAAGCTCCTTCGAAGCTTTCAGCCGTTTTCTTGATAATATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCTCTCGCGAGAGAGCCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //