Array 1 68793-69493 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCE01000036.1 Alkalihalobacillus clausii strain 7540-2 contig00036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================================= ================== 68793 32 100.0 35 ................................ AAGTAACGGTCTTGCCACGCAAAAGCAGCCGAACC 68860 32 100.0 35 ................................ TATGGCGGGGCACTCGCCGCTGCCTATTGACGAGG 68927 32 100.0 34 ................................ GATGCTGATGAAGTCGCGCCTAGCCACCGTACAC 68993 32 100.0 35 ................................ AATAGGCGGTTCCAAAGTTATAAAACCGACAAAAA 69060 32 100.0 36 ................................ CATCTTCTGAACAACCGTAATTAACGGAACCTCTAC 69128 32 100.0 33 ................................ CCAGCCTTGTTCGACCTCTACCTTTCCCTTTGT 69193 32 96.9 35 ...........A.................... TACCACTGCTTTTACGAAGTACTCGTTTAGCTCCT 69260 32 96.9 34 ..........A..................... CAGATGTCCATGTTGATTTGACCTGTCTGTAAAG 69326 31 78.1 105 ..........A..C......-.TC......TC TCTTTGACAGATGCTACCGATTCCGCGTCTAAAGGTCACACGTTGTGTAAGTAATAGAGTCAAATAAAAGTTTCTCTGGCCCACACTCTTTTTCATTGCAAAAAC 69462 31 78.1 0 ............T........AC..-...TCA | A [69472] ========== ====== ====== ====== ================================ ========================================================================================================= ================== 10 32 95.0 43 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ACAACTTGAATTAGAAACATCGGCGATTCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAGCTAAAACAATGTTCAACGGGCATTTCGATTGTTTGTAAAAACCGACCAACCGTAACAGGCGCTTTGCATGCATGGAAGAATTCAAACCATGATTAAATAGGACCAACTTTTGTGCCCGGGCCGCTTCTTTATAGGTTAACCGTTTCAAGAGACAATGTTTATGATTGGACCCCAAGGGAAGCGATCACCTCCTTTCAAGGAGAAACGAGGACAACGAACATTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTAAATATGTGTTAATATGTACAAAAATGTAATAATGTGATCTTGTTCACTGTGCTATGATAGGAAATAGAGGCAAAATCAAACGTTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : ACTTCCACCTCTTGTTTGATTCCTTTCCTAACAGACCTATTTTCTTCTTGTAAAAGGTCTTTCCGATAAATGCTAGTCGGTTTGTTGTTGAAGGGTTTGCAACTTCAATTCGTGTAAGGAGAGTGTAAAATAGCGTAGCCATTAAAACGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCGTGCGGCCGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGTAGATCACCCATAT # Questionable array : NO Score: 8.30 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:-0.70, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 30222-30915 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCE01000040.1 Alkalihalobacillus clausii strain 7540-2 contig00040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 30222 32 100.0 35 ................................ CAGCCTGGATAAATTGGCAGAAACCTTGTAGGATG 30289 32 100.0 33 ................................ TCTTTCAAGGCGATCAGCTAAAATGCGGTCAAT 30354 32 100.0 34 ................................ TCCTGTCGCCTTTTCTAGAGCAGGCTTTAGCTGT 30420 32 100.0 34 ................................ GCGTTAAACGTCGCGCGGACGGTAACGTCGAAGT 30486 32 100.0 36 ................................ CCGACTGTCTCTTCGCATAAAAGTCGAGGAGTGCTC 30554 32 100.0 35 ................................ GTATTCATTGCGTCCGCTAGACTCCGCAACCTCAG 30621 32 100.0 33 ................................ GTCAGACAATGCTTTAAACGCATCTAACTGTTT 30686 32 100.0 34 ................................ GCTCAACTCGTCATAAAACTCAAACGGAAACATG 30752 32 100.0 34 ................................ TTAAAGGTCCCGTCCCCAAAAAGAATGTCGTACT 30818 32 100.0 34 ................................ AATTTCAGCAGCGGCCAACATGCAATCTTTCTTT 30884 32 96.9 0 ...........A.................... | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 99.7 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : CCCAATCATCGCGATTCAAATACTGACGATCATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGAAAGGGCGATTTGTAGAAGTTAGCTGAGCCTGCCGATATAAGTAGCCGGCAGGCTTTGTATTTTGGAGGAAATCACGTATTTTGAGTGGCGGTGGGGCCAGTGTTTGTGGAATGGGCGATTGCTTGCAAAAAGACATTAGATTTTGATCTATGATCATTAAAAGTGGAGGACGTGATATAATTTGGATAGTCTGACACGTAGAGCAATTGGCTGAGTTTAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGTGCTCAAATATGAGGAAATATGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAGAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAAATTCCAAAAAATAGGGAGATTTGGCT # Right flank : GTATTTTCAATTCGATACAAAAAAAGCCTCGGCACGAAAATGCCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTATTGATTTAAAAAAAGGTACATTAACTTCGCCCGCAGTTTTAGCAAAATTTGGCGAGGATAAAATGGCAACGATGGCTGACAGTTCATCCTACTATTTGCTCGAACGGGCCAACGCCCGTTTCTGAAAGATAGTGTTAACAACAAGGGAACATGCTATAATTGAAGCACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCTCCGAAAGGGGGTGTTGCTGGAATGTCAACACAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 47-275 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCE01000028.1 Alkalihalobacillus clausii strain 7540-2 contig00028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 47 32 100.0 34 ................................ TACAGTAGGGATGAAACCGAACGTCTTGGCCTGA 113 32 100.0 35 ................................ CATATAGTCCTGCCAGAAAATTTTCAGGATGTCCG 180 32 96.9 35 ..........T..................... CCGTTTTTAACATAATCCATCATGATGCGCTGAAA 247 29 87.5 0 ...........T.............---.... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 96.1 36 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : TGGATTGAAATAATGGAAGCAGTAGTGTTTCCGCCTTTTCTAGGTCG # Right flank : TGTGGGCTTAAGATCCTTGCACGGTGTGGCTGTGTTTCCCCCATCTTATAAATGCGCCAATTAACATCCACATGAATCGACGTTCGCTTGCGATAACAACTAATAAAGGTACAGAAAACCAAATAAGCAATATGAGCGCACCGATGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTTGATAATGTGATAGCTTGCCAGAGCTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACACCAACTTGTTGCTCCATGAGGCTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGAGGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACATCCGTTCTTTT # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 6180-7006 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCE01000028.1 Alkalihalobacillus clausii strain 7540-2 contig00028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 6180 32 100.0 34 ................................ TGACCTGGTAGCCACGCAAGGCTCATTTTCTATC 6246 32 100.0 34 ................................ CTTAGCGCGACAAAAGCATCAAACTCAGCTTTTG 6312 32 100.0 33 ................................ AAGAAAAAAGGAAAAAATCATATATTACTATTG 6377 32 100.0 35 ................................ CATCAACCAACCGCTCTGCTCGTTTCCATAATTCC 6444 32 100.0 36 ................................ ATTGAGATTTAATTGACCAGTTGAAATGGCCTCAAA 6512 32 100.0 33 ................................ TCCGTGTATATTTGTCACTAATAACGCTATGTG 6577 32 100.0 34 ................................ TGATGATTATAATACGTACGGCTTAATAGACTTT 6643 32 100.0 35 ................................ TGCGACCGGTTTAATATGGTCGATGTGAAGCAATA 6710 32 100.0 35 ................................ TAAAGCGCTGTCAATTATCCGATACATAGAGGACG 6777 32 100.0 35 ................................ AGCTTCGAGACACATATGCATTACAACTTTGCCAC 6844 32 100.0 33 ................................ GTCCGGTAATGTATTTAACATTCGGTCGGTTAC 6909 32 100.0 35 ................................ CGTTTGGTTGGTTCTTCATCTTTTCGATGATTTTT 6976 31 84.4 0 ...T........A.......-A.........G | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 98.8 34 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : GTTCAGAAGAAGAGGAGGCTCCGCTGGCGGTATATCTTGCTTCTTTTAAGCGAACGAATTTGGAGAATCTACTAAACGAGCTGGAAAAGGCGGCGAACTTGCCCGCGTATCGAACCAATCTGTTTGAACATTAATGGTGTGGACCCATGAAGGAGGCATTCCTGTGATCGAAGCATGGACAAAAAACACTACGAGACGATCCCCTCTAATCGTGGCTTTCGGTCATCTACCAGCTAAAAAAAGTGGTTTGTAAAATAATGTTGAGGTAACTCATGGGTTGTTTTTCAGTTTTAACTTCCATCCCAAACACCTACCATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACTAAAAAAGTACTCAAATATGGTTGAATGTGTGAAAGAGTGTTAAAATGTTGTTCGTATCCCATGGTATGATATAGGAAAAGAGCGGTTTTTCTCTAGGATTCATCCATTGGTTTCCAAAAATAGGGGGATTTCGCT # Right flank : GGCAACGTCCTCCGATTGCAATATAAGGCGCTTGGTCGCACTCTTACTTCTACCATTTCCATTAGCCCACTCACACCAAGAAAGTGTCCACGTAAAACGAGAGCCAGGAGTTTTCCTCCTGGCTCTGTCTGCTTTTTTCAAGAATTGCTTTGCTAAATCATGATTAAATCACGACTAAACGGTTGAACCGACCCGCTCGATGTGGATTTTTTGCTGATATTGTTCGGCTTGTGAAAAATCAATCGTTGGCAGCCAGTGGAGGCAGTTTGCCAATGAGAGGGCGCTGCCTGCTAATAGAGCTGCTTTTACATCGTTTGTTTTTCGCCACTCGCGTATAAAGGTGCCGAGAAAAATATCGCCTGAGGCGGTGGCGTTAGTTACGTTAATCGGTGGGAGCGTGACACGCCAAATGTCTCCGTTGATTTTGGCGACTGTTCCTTCGCCGCCTAATGTGACGATGCAGTTAGGGTAAGGGCTGTTTTTTAAACATTCTTCGATTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 13600-14363 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCE01000028.1 Alkalihalobacillus clausii strain 7540-2 contig00028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 13600 32 100.0 33 ................................ AAATCCCGAAAAGCTGACTGGCAAAGGATTGTC 13665 32 100.0 35 ................................ CTCGGTAAATAGTGCAGGGCGGCCTTGCAAATAAT 13732 32 100.0 34 ................................ TAATAAGATTGTTCAGAAGATCATCGCGACCAAA 13798 32 100.0 38 ................................ AAGAGCAGCAGGGCCAGAATCAGCGGGCCATGTAAATG 13868 32 100.0 35 ................................ AAGCGCGCGCCAACAGCGGCGATTATACGGCCGTT 13935 32 100.0 35 ................................ CAGAAAGTCAAAAATTACGAAAACCGAACACCCTA 14002 32 100.0 34 ................................ TAAAGAGCAATAGCAATACATCAGATAACGCTGC 14068 32 100.0 35 ................................ GATCCTTTACGAAGCCGACCACGCGGAGCAAGTCG 14135 32 100.0 33 ................................ GTAAGTCTTGCCCGTCTCACGCGCCAGCTCCAT 14200 32 100.0 34 ................................ GGCATGCCTACGTCTCCTTGTACAGTATCAAGCA 14266 32 100.0 34 ................................ CAGTAAGGAGGAGTAGTGTCATGAAACATGATTT 14332 32 75.0 0 ..........TCA...C...A.......C.CC | ========== ====== ====== ====== ================================ ====================================== ================== 12 32 97.9 35 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Left flank : GAAATGGCAAAATCAAAAATCCGCATGGTTGGCAGTGAAAACACGGTAGTGCCAGCATTTGCGTGAAAAGCGTAAGCCCGGAGTCCTTCACCTTCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTCTTTCATTAATTGGGAAGGGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACTTTCCTTACGCCAACAGGAGTTTTCTTATCAAATATAGTAAAATAGACAGTAGTAGAGACAGACACAATTGACGAGGGAGATTAACATTTACAATTATTCATTTTAGTATTTTGAACCTGTGATTCTTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTGAATGTGGGTTAATGTGTGAAAAAGTGTTAAAATGTTGTTCGTGTCCCATGGTATTATATAGGAGAAGAGCGGCTTTTTCCTATTATTGATTGTTTGGCTGCCAACAATTAGGGGAATTTCGCT # Right flank : CCTCGTCACTGCTTCTAAAGGAAATGCACAGTTGTAGCGGTGTTGGAAAAATAAGTTCTTTGTCGTGATGATAGAACAGCAGCTCATAGCTTTGGCAGTTAGTAAAACATGTCTATCTTCACAGTGATTCCAAATATTCACCATTTGTCTGGATCGGTGAATGCCGAAAATCTATTTAAGTTGTTGGAGGGAGTAGTCAGCATGTTAACAAGGGAAGATATCTTTAAGCACGTCAAAGAAAAATTCCGTACATCGCCTGATTATCCATTTCAAAAATTTCCAACCTATGCTGCTTTGAGACATAAAGCGAATGGAAAATGGTATGGCCTTGTTATGAATGTTCATCCAGAAAAATTAGGGTTGGATGGAAATGACGAAATAGATATTCTGAATTTAAAATGTCAACCTGAAGTAAGTGGCAGTTTGAGAAATGGAAAGAGTATTTTACCTGGATACCATATGGATAAGGAAAATTGGATATCAATTGTTTTGGAACGTGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 20779-21009 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCE01000028.1 Alkalihalobacillus clausii strain 7540-2 contig00028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20779 32 96.9 36 ..........A..................... CCGTAGCGAAGTGGGTTATATGTCAGATTTGCCGTA 20847 32 100.0 33 ................................ TGGTGTAAGGGTTAACTCTCCGCCCTCGTTTTG 20912 32 96.9 34 ............A................... TTCAGGGTCTTTAAGGCGTATTTTCACTTTATTC 20978 32 75.0 0 .......................CTCGTTCG. | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 92.2 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : ATTTTTCCACTTGTCAAACGATAAACGGAACGGTTCAGGAAACATTTTTGCTTCTCAATCGTAGCAACTAAGAAGACATAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCCCTGGAAGAAGTAGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTCTTAACAGCAAGGATCAGGCCCATTTCATACACATATCAAACAAGAATGGCGAAACAGATACACAACCTCATGTGGGGAAGAAGGGATGGTTAAAGGAGCTCCATCAATCGTTCCCTTGTGAGCATTCAGTATGATTAAAGAAGATCAAAAAACACTTGGTGCGAACCCCAAGCGCATATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAGCTTAAATATATAATATGTGTAATGATGGTAAAATGCTATACGTATGCCATGATAGAATAAAAGAAAAGAGCGGCTTTTTCCTATAATTGATTGTTTTCCAGCCAATAATTAGGGGGATTTCGCT # Right flank : TATGCAACCTAATAACCAGTAGGTTATCGACGTAAGGCATTTGGGAGGCGGATCTGCCATAAAACGAAAAACAGTAGTTTTAGGTATAAGTGGGTTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGAATATGTGCCAGGGGGAACTCAATTAAAAAAGAATGAAAGAGACTCGATTGATTATTGGACCAAAGACAACATGAAAAAAGCTGTTCCAGGGGCAGGAATGGACGAATAAGCCTGCTCCTCGAACAGCTTTTGCTAACTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAGCGGTTAAACGGGGTGAAGTATGAAACTGCGTAGTCTAAGTTAATGAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATTGACAATTTTCATGGCTGCGATGCCTTTTTTGCAATTTAACAAATTGGCTTGTTCTCTTGTCACGTTGACG # Questionable array : NO Score: 6.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.61, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //