Array 1 78985-74529 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIGN01000007.1 Streptococcus suis strain LSS37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 78984 36 100.0 30 .................................... ACTTGTACTCAATATCAGGATTAATCATAG 78918 36 100.0 30 .................................... GCTCCCCTCTTTCAATGCGTGCCTGTTCTT 78852 36 100.0 30 .................................... GTGTTTGTCTTTGGAATCAGTATCACTTCC 78786 36 100.0 30 .................................... TTAGGAGGCAGAAAATGATACCGAAGTTTA 78720 36 100.0 30 .................................... TCATGATTCGCAAACATCATATCAACCGTA 78654 36 100.0 30 .................................... TTCTCAAAAGCCTCCTTGACCGGTGCCTTT 78588 36 100.0 30 .................................... GCAGACATAACAAAAACCCTTGTGTTTCAA 78522 36 100.0 30 .................................... AACGGAAATTTTGGGAAATGTCCGTGATAA 78456 36 100.0 30 .................................... CCAGCCCTCAAAAGATAGAACCAGTCTGTC 78390 36 100.0 30 .................................... CGGTTGAGTCGGTGGATGTTGATAATCGGC 78324 36 100.0 30 .................................... ATCTTTCATTTGCGTTGGGGTGAGCATACT 78258 36 100.0 30 .................................... TTATTGATAGTGGGTTTGATATGGAGGTGT 78192 36 100.0 30 .................................... CAGCCACTTGCCCATTGTCTGTCTTAGCTT 78126 36 100.0 30 .................................... GCTATGTTATGTCTGTGTGGTTTGAGGAAT 78060 36 100.0 30 .................................... TAAAAATGAACTTTTTCAACTGGTTAGCAT 77994 36 100.0 30 .................................... AGCTAGAAAAAAATACCAATCCACGTTATC 77928 36 100.0 30 .................................... TTCCAAAAATTTCATATCATCCTCCATAGT 77862 36 100.0 30 .................................... AGAAGCAGTTAGAAGGGCTTCAAATTCAAC 77796 36 100.0 30 .................................... TTGATTTAATTATACCTAAAATAATTCCGT 77730 36 100.0 30 .................................... ATACAGAAAAGAAAAGACGCTGGTAACCTG 77664 36 100.0 30 .................................... AGGCTTCAAAAGTACGCGGTCGTATGAGAT 77598 36 100.0 30 .................................... AGCATGGCTGGGTTGAAGTTATCACACAAG 77532 36 100.0 30 .................................... ACCTCCTCAAAAGAGTCCTTTATTGATTTT 77466 36 100.0 30 .................................... CCACCGAATAATTTAGCAGTCTCTCCATCT 77400 36 100.0 30 .................................... GTCTGATGCTATTGTATCCGACCGACACCA 77334 36 100.0 30 .................................... AGGTCTAGGATAAACTCATCACCCAAATTA 77268 36 100.0 30 .................................... CATTTGATACCGCATCTTTTGCACCGTTGA 77202 36 100.0 30 .................................... CACCTTGTCGATAGTTCATGACCAACTTCA 77136 36 100.0 29 .................................... AGTCTTACTGGATGGAAAGCACAGCATTG 77071 36 100.0 30 .................................... CTAACAGCTACTTTCATAGCTCCCTTTATT 77005 36 100.0 30 .................................... AGCTGAGGTGTCTGTCAATCTCTTTCTTAA 76939 36 100.0 30 .................................... ATGACTGGTTGATACGTAACGGATATGTTT 76873 36 100.0 30 .................................... CTAATCTAAGGCTATCCGACTGTCGCAGGC 76807 36 100.0 30 .................................... TTGTGCCTTATCATCAAAATACATTTGACC 76741 36 100.0 30 .................................... GTCAAGACTTTCTTATGTGTTCATGATTTT 76675 36 100.0 30 .................................... TGCAGGCCATATCGCAGTGCGTCCATAAGG 76609 36 100.0 30 .................................... TTTGCAACTCCAAACTTATTAAATTCAAAC 76543 36 100.0 30 .................................... ACGGATACGATGCTAATGAACGCCTGGTTC 76477 36 100.0 30 .................................... CCTTGGTTCTGTAGAAGAAGATTTAGGCTA 76411 36 100.0 29 .................................... ATTAGTATCTACCACTATACCCACTAAAG 76346 36 100.0 30 .................................... GCAAAACGAAAACTGAAAGAGTACCCTCGC 76280 36 100.0 30 .................................... GTACGTAAGGAGCTGGACCAAAGTCTGCTT 76214 36 100.0 30 .................................... TAAAAATCCTAGGCGGTATCATCGAGTTTC 76148 36 97.2 30 ...A................................ TAAAAATCCTAGGCGGTATCATCGAGTTTC 76082 36 100.0 30 .................................... GTTGGTGTTAGAACGAGCAAAACTGGTGTT 76016 36 100.0 30 .................................... ATAAAAATAATCAAAGTATAAACGTAAAGC 75950 36 100.0 30 .................................... ATTAGCGAAGTCCCATAGTGCTTTAGTTCT 75884 36 100.0 30 .................................... GTAAGATATATATAGTATATCATGCGTGCT 75818 36 100.0 30 .................................... TACTGAATCACTTAATCAAACTACTAAACT 75752 36 100.0 30 .................................... AACAAGCCTTTGAAAACTTTGTTACAGGTT 75686 36 100.0 30 .................................... TCTCTACAAAGGCGATAAGCTACTAGCAAT 75620 36 100.0 30 .................................... GAAAATACCGACTTAGTCACAAACGTGAAG 75554 36 100.0 30 .................................... GTTGGTGTTAGAACGAGCAAAACTGGTGTT 75488 36 100.0 30 .................................... TGGTTGATATTCTTCTGGCACGATGCCATT 75422 36 100.0 30 .................................... CCATCTTCAAAAGTGGTAGTGACTTGGATT 75356 36 100.0 30 .................................... ATAATAAAACATCTCTAAACCTCACAAAGC 75290 36 100.0 30 .................................... ATTAGCGAAGTCCCATAGCGCTTTAGTCCT 75224 36 100.0 30 .................................... GAAGAGTGAACAAAGCGAAAATTAAACGCT 75158 36 100.0 30 .................................... ACACCGTTTGTAAATAAGTGGTAGTCAAGG 75092 36 100.0 30 .................................... AATGAATTTTGCTTTTAGTGAATTAGAGGG 75026 36 100.0 30 .................................... GATGATTCACAATCCATGGACATTTGCCTA 74960 36 100.0 30 .................................... CTTATCTATATGATCTTGTCAATTATAGAG 74894 36 100.0 30 .................................... AAATCGCTACCTATAAGCGTACAGCAGATG 74828 36 100.0 30 .................................... GTTTGGCACGCAAGTCGAAGCAATTGATGC 74762 36 100.0 30 .................................... TGGAGCTGATACAGTCTCTGCTTACAATAT 74696 36 100.0 30 .................................... GATATGCTTATGAAGATTTTGACTATATCA 74630 36 100.0 30 .................................... TAGAGCAGACTGAGCTACTTTCAACTGCTC 74564 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 68 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : AAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAAATAGTCTACGAG # Right flank : CGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTAGGAACTGGTTCGACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //