Array 1 107937-106277 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXNO01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SLRe1505 NODE_10_length_169990_cov_32.9567, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107936 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 107875 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107814 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107753 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107692 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107631 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107570 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107508 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107447 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107386 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107325 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107264 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107203 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107142 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107081 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107020 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106958 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106855 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106794 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106733 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106672 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106611 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106550 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106489 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106428 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106367 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106306 29 96.6 0 A............................ | A [106279] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125011-124068 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXNO01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SLRe1505 NODE_10_length_169990_cov_32.9567, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125010 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124949 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124888 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124827 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124766 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124705 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124644 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124583 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124522 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124461 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124400 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124339 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124278 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124217 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124156 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124095 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //