Array 1 183132-182239 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMXW01000005.1 Streptococcus salivarius strain BIOML-A23 scaffold5_size232941, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 183131 36 100.0 30 .................................... TGTTGAATACGGAACTGAGCAATGCGTTGG 183065 36 100.0 30 .................................... AATACCAAATGCTTCAAATACTTCAGAAAG 182999 36 100.0 30 .................................... TTTCGCTCGTATGCTTAACCGCTTCGCTCT 182933 36 100.0 30 .................................... TAGCTTGTGGTGCTGTATCTGTTTTCGGTC 182867 36 100.0 30 .................................... TTCTACTAAATTCTGCATTTTAATCCTTTC 182801 36 100.0 30 .................................... TAATCTCTTTGATGTCAGTCCCAACCGCTG 182735 36 100.0 30 .................................... TGTTATTCAGAACTTTGTAAGTAAAGGTGT 182669 36 100.0 30 .................................... GATTGGTCTTTTTCTTGCCGAACAATGACA 182603 36 100.0 30 .................................... CAAATGCTGAAACAGCAACGTCGTTGGTAG 182537 36 100.0 30 .................................... TACTGGTATGACTAACCTTGGTAATGGTAT 182471 36 100.0 29 .................................... AAAACCACCAACCCAACATAAAGGAGCTA 182406 36 100.0 30 .................................... CTCCGGGCTTGCCGTAACTATAATCGTCAA 182340 36 100.0 30 .................................... TATCGCGAATGGTAATAGCATCTTCATCTA 182274 36 88.9 0 .............T...............A....GG | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTATTTCAGAGGAATCTTATGATAGTTTTTATAAGCAAATCAGTCAGATGGTCAAAAAGTATCCAAACTTAACCTTTATCTTATTTCCTAGTGACCAAGGCTATTTAAAGATTGATGAAGAAAATAGCAAGTTCGTGAATATTTTATCTGACCAGGTAGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCAACGAGAGAGGATTTTAGGATGTCCTTAGAGACCGTAACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGCCTCACACTTGTTGATTCTGTAATTTTGAATATTCTAAATCAGCTGTTTCAATTTAATTACCGTATAAGATATTCACAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATGAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGATTGTCAGGCTGACCAACCTCTTTGACCTCAGTCAAATTAAGGATAGGAAGGCTCTGTTTAAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTCACCCAGGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAATCCGTAAACACCTGAATCGGCGATACAGTGGATAATTCCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCTGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 111485-111054 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMXW01000006.1 Streptococcus salivarius strain BIOML-A23 scaffold6_size111578, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 111484 36 100.0 29 .................................... AGTTTCCTCACTAGCTCACTGCTACGGCT 111419 36 100.0 29 .................................... TTCAAGCTCGAAATTTAGAAAAGGGCTAG 111354 36 100.0 31 .................................... AGATAAAATGCGTTGTCCATTAAGGATAAGA 111287 36 100.0 30 .................................... ATATAATACTGCTAAAAACACCCTCTAAGG 111221 36 100.0 30 .................................... TTCCAAAATGTTACCCCCCTATTAGAAAAC 111155 36 97.2 30 .........................A.......... ATAGGTATTATATGTCCACTTCTCGTTTTA 111089 36 83.3 0 ............AC...............T..CTC. | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 97.2 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CACCCTCTAAG # Right flank : CTCTTTATAACGATTTTCGGTTGACTTCTCTTCAAACGAATCTTATCATAGAGGAGTATAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGATTTTGGTCGTGGCATTAGGGCAGATTCTTTACCTCTTGCCATGACAAAAGCGTCTGTGTTCTTATCACATATTATTAAGGGGTATGGAGATAAGGCTTTACCTGAGCCGACTGCGGTAAGCAGCATTCCTAATGAGGAAGAACTCGTCGTGTTAATCCAAACAGAGCTTGATTAAGACTAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAAGACGACTAAAATTCCTGCAAAAATTTGTAAATACGAGAAGGGTTCTCCTAAGACGACGACAGCCGCTAGAATTGAGATAATTGTCGAAATCCCAATAAAGGATGCTGTTCTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //