Array 1 177483-180626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVB010000007.1 Erwinia amylovora strain Ea6-96 Ea_6-96_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177483 29 100.0 32 ............................. ATCGAATTTTGGTGATTAGTGATAATCAGAGT 177544 29 100.0 32 ............................. CGCTGGTACTACCGTTCGATAGTGTCGATTGC 177605 29 100.0 32 ............................. CGGCGGCAGAAAAGCTATTGCCGGAAGCAAAG 177666 29 100.0 32 ............................. CCAGAGATTACGACCAGCCATGCATTAGCTGT 177727 29 100.0 32 ............................. GATGTATTGCGTAAAACACGCAACGTTATCCG 177788 29 100.0 32 ............................. GGGATGGAATTCGCATCACAGATAGAGGATCT 177849 29 100.0 32 ............................. GAAATGGCAGAGCAGAATTTAATCGAATATCT 177910 29 100.0 32 ............................. ATGCTGACCGCCGCAATCTGGTGGGTCGTTAC 177971 29 100.0 33 ............................. CCAAAAAACGGCGAAATCACTGTTATCTGGTCA 178033 29 100.0 32 ............................. CCGGTATGGCGATGGGAATAGAGCCGTCAGGT 178094 29 100.0 32 ............................. CCACCCTACATTGTGGCGCATGTGGGCGCAAA 178155 29 100.0 32 ............................. CAGTTATTCGACGACTATATAGCAGATCAGGT 178216 29 100.0 32 ............................. CAATTCCGTGTTCTTCAGCACAAGAGCTTAAT 178277 29 100.0 32 ............................. CAGAGCAAAGCGTCATTGGCGGCATATTGATT 178338 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 178399 29 100.0 32 ............................. TTAATGGAAAAGATTGACCAAGAAAGTGCGAA 178460 29 100.0 32 ............................. GTGATTACATAATCTGCCAGCGTTGCCTGCAG 178521 29 100.0 32 ............................. CGGGCCGTGCCTGATGTATCCGCCCCTGTCTG 178582 29 100.0 32 ............................. CCCTCGGTAAACAGGATCTTGGCTCGCAGAGC 178643 29 100.0 32 ............................. CTGGCATGGCGATGGGGATAGAGCCGTCAGGT 178704 29 100.0 32 ............................. AACCAGCGTCAATAATGGAAAATACTCATTTA 178765 29 100.0 32 ............................. GGAGCAATCTATGAATACAGAGCAGCTAAAAG 178826 29 100.0 32 ............................. CGATATCGACTCAGTCGATTTCCATCTCCACA 178887 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 178948 29 100.0 32 ............................. GGTGTCCAGCTCAATAGCTGTTTTTACTGCAT 179009 29 100.0 32 ............................. ACCTGTTTGATGTAGAGCCTGAGAGAAACCAG 179070 29 100.0 32 ............................. AGGAGCCTAATGATTACGGCGAGTATATCGAT 179131 29 100.0 32 ............................. CAGACCAAACCATACCCCTGCTGAATATGTCC 179192 29 100.0 32 ............................. CGTAATCTGATGGCTGATAGCTGGGTGTTGGT 179253 29 100.0 32 ............................. CCTGTCTGATGGCCTTCAATCAGTTACCTAAC 179314 29 100.0 32 ............................. TGAGATTGATGCAATATCGGTCATTGTGTCAC 179375 29 100.0 32 ............................. AATTGAGCTTTCAACGATTGCAGTCCCCGCGA 179436 29 100.0 32 ............................. CTGATGCTGGCCAATCACGGTTACAGTGACAA 179497 29 100.0 32 ............................. CATCTCGCACCAGCAACGAACAGCAGCAAGGC 179558 29 100.0 33 ............................. ATGATCGATAATGTTTTCGCCGCACCACATAGC 179620 29 100.0 32 ............................. CACGAGCCAGAATTATGCAAATACCGCCGTGA 179681 29 100.0 32 ............................. TAAACACGGAGCTGACCCAGTCCACCCCGCTA 179742 29 100.0 32 ............................. TATCAGGGGAATATCTGGAGGCTCACGTTATT 179803 29 100.0 33 ............................. GATGAATACCAGTTCAAAACGGGTGAAGTCTGC 179865 29 100.0 32 ............................. CATGGTCCGAATCGATAAAAGGCGCTGATGCC 179926 29 100.0 32 ............................. CTGGGTGGCTCAGAGTTTGCGAGCATATCTCC 179987 29 100.0 32 ............................. AATTAATCCAGCTGTTCGGTAGTGCTGTTGCT 180048 29 100.0 32 ............................. CGTGCATACAAAAAAACCGCAGACAGGCTCAA 180109 29 100.0 32 ............................. TATTTATTGAAAGTGCAATTGCAGCAGCACGG 180170 29 100.0 32 ............................. CCTGCGTGAGTCAGCGAGTCAAAAGGGGCTTT 180231 29 100.0 32 ............................. CCGATTGTCACGCGAGTTGGATTTAATGCCAA 180292 29 100.0 33 ............................. AACTAATGTTGCTGTGCTCACAATAATCCCTCC 180354 29 100.0 32 ............................. GTTCCCGGCGCTTCGCCACTCTGCCACCACTC 180415 29 100.0 32 ............................. GCAAAAAAACATGACTGCATATCTGTATCGGA 180476 29 100.0 32 ............................. TCCAGAAGGGCATAACCTGCATTAACCCGCGA 180537 29 100.0 32 ............................. AGCAGTACAACATGTTCGGCTCGGCAATTAAT 180598 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 52 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACTTCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAACTGGTTTACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 210394-212261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVB010000007.1 Erwinia amylovora strain Ea6-96 Ea_6-96_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 210394 29 100.0 32 ............................. GTTTCAGGAGTCTGGAGGGCAAGCCGATGCCC 210455 29 100.0 32 ............................. CTATTAATCCCACCTCCGCGCCTCCGTCGAGT 210516 29 100.0 32 ............................. CGGCAGCAAGACAGGAATCATTCATTGAAAGT 210577 29 100.0 32 ............................. AGCGTTAAGCCATTTTATGACAGTCTGGCGCA 210638 29 100.0 32 ............................. CCAGTGCGCCAGGCGAATGGGCCAGTGGGGTT 210699 29 100.0 32 ............................. GTAACTGCATAGTGCATTAAAAAATAGCTCAT 210760 29 100.0 32 ............................. GGAGCAATCTATGAATACAGAGCAGCTAAAAG 210821 29 100.0 32 ............................. ACAGCGATGGAATTAAAGGCTGATAAAAAAGA 210882 29 100.0 32 ............................. CCAGTATTGAGAGGTGGAGAATCCGTTATAGG 210943 29 100.0 32 ............................. GGTAATTCGCGGCGAAAAGGTTAGTGGCGGCT 211004 29 100.0 32 ............................. GAAGGTACCAGATCGGCATGACCACCGGGAAC 211065 29 100.0 32 ............................. CGTTGCGTGAGCAAAACGGTCTGGCAGGAGTA 211126 29 100.0 42 ............................. TCTCTATCTGCATTGCTTTTTTGCGTTCTTTTGCGTTCTTTT 211197 29 100.0 32 ............................. ATTCAAACGGCTTGCCGTTCATACGAGGGCTA 211258 29 100.0 32 ............................. TGATGATGCCTCGTCTCCAGCAAAAATTAGCC 211319 29 100.0 32 ............................. AATGCATGATTTCGGTTCATGCAGAGAGGCGA 211380 29 100.0 32 ............................. CTGGCGTGATGCTGGGCGACTTCAGTTCGGGT 211441 29 100.0 32 ............................. TAATTCAGCGTACTGGATGGTGACAAAACTCT 211502 29 100.0 32 ............................. ATGCAATGCTAACTTATAATAACATATTGACC 211563 29 96.6 32 ............................A GTTGCGCTGACCAATATGCGCGACAGCGCTAC 211624 29 96.6 32 ............................T TTGCCTCAATGAGTAGCCACGTTCTCGCAGTT 211685 29 100.0 32 ............................. TATTGTCTCCAACAGCAACAACACCGACAGGC 211746 29 100.0 32 ............................. CTATGAGAAAGCGCCACGCTTCCCGTAAGGGA 211807 29 100.0 32 ............................. GCCAAAATATACTTAATGGGCGGCTATGAAAC 211868 29 100.0 32 ............................. CGCTCCAGCGGTGACGCGACGAAAGAACGGCT 211929 29 100.0 32 ............................. CTTTAGTAGCCTTTTACGTCTATAGCCTTTAT 211990 29 100.0 32 ............................. ACCGGACTAACGGCAATAGCATCCGCCATCGC 212051 29 100.0 33 ............................. CATGAATACCGGGATATTGAACGCTTTTTCACC 212113 29 100.0 32 ............................. CTCAAAATCATCATCAAAATCACGCCACTTTT 212174 29 100.0 31 ............................. CAGAGCGGGTCAGATTCAGGGATGTATGTCA 212234 28 79.3 0 ...........AC..-A....C......A | ========== ====== ====== ====== ============================= ========================================== ================== 31 29 99.1 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCAGGATACCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGTCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATTTAAAAACGGGTCTTTTTCACAGTAGATAATCTGGTAGATTTTGACGGGTGAAAAAATCCGTTATAATTCAGCTGGATGGATTTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 221726-222113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVB010000007.1 Erwinia amylovora strain Ea6-96 Ea_6-96_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 221726 28 89.3 31 ......C...........G........T TTACGTTTGCGTTAACAGTAAGCTCTGCAAC 221785 28 100.0 32 ............................ GGCTAAATGCCTGAATTCAACGTTCTACAAAA 221845 28 92.9 32 ......C...........G......... ATCGCACCCCACTGATTGAAGAGCAGCACACT 221905 28 92.9 32 ......C.................T... GAGCAATATATTCGATAGACGCTGATTTGCGT 221965 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 222025 28 100.0 33 ............................ GCCAACGTTCACTGTCATTTAGCCACGCTTCGG 222086 28 75.0 0 .....A........G....TT...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 92.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGCGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCACCAGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGATTGGCGTTATAGGATGGTTGTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTAAATGCGATAAGCCAGTTAGCGTAGTAATGTAACG # Right flank : ATGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCATCACGGGCTTCTCATCCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGTTTAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAATCGCGGGTTTTTCACGGTTTTTTTACAATAAATAAAGAAAGATCTTATTTTTTTCTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTAAAATTTTTTTGCTCAATAATTTCCAGAACTTTCATTTTGAGTTGGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGAATTTAATGAAATGCAA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACCGCCGTACAGGCGGCTTAGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //