Array 1 80195-77765 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKCJ010000008.1 Serratia ureilytica strain SER00257 SER00257_c0008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 80194 28 100.0 32 ............................ GTTGCCGATGTTGACCAGCTTACCGGTCAGGT 80134 28 100.0 32 ............................ CCTAGGAAAGTTAGCCCGGCTCTCAATAATCG 80074 28 96.4 33 A........................... TCGGCCGACTCCTCTTTCGCCTCGCTCGCGTCA 80013 28 100.0 33 ............................ CGTTCCGCGAAAATTGCCATCAGGCGTAAATTC 79952 28 100.0 32 ............................ AGCACCAGCACCAGCACCGACAATGCCGGCGT 79892 28 100.0 32 ............................ TGGTGACGATGGCAATCGACCGGGCTCAGGAG 79832 28 100.0 32 ............................ TTACTGGTAGCTTCGGTTGCCTTTATCTCTGC 79772 28 100.0 32 ............................ GCAATGCTGGCAGCAGCGCCGGAGGGTGGGAA 79712 28 100.0 32 ............................ ACGCAGCCCACGATTTCGGGTTTTCCTCGATA 79652 28 100.0 32 ............................ GGTGGCGCGGCTACTGGAAAGCCAAAGGCTTT 79592 28 100.0 32 ............................ TGAATACGCAGGCGCAATTCCAGGTTGCCGTT 79532 28 100.0 32 ............................ TGCGAACCACAGCTTTGCCCTGCCAGAGCTAT 79472 28 100.0 32 ............................ TGCGCGTAGGACATATTTAATTTAGCCATGGT 79412 28 100.0 32 ............................ AACGAAACGGACTGGAAAGTTTCGTGAGACAC 79352 28 100.0 32 ............................ TGGAGCGCGTCGGCCCCAACGGCTGGCAGGGC 79292 28 100.0 32 ............................ AATACCCAATCAAGCGCCATCGTTATCACGCG 79232 28 100.0 32 ............................ CAACTGATTACATGCCAGAGGTGGCAGAAGAT 79172 28 100.0 33 ............................ CGGACGGACGCGGGCAGCGCCCAGCCATCTTCT 79111 28 100.0 32 ............................ GGCAACCACAGCCAGGAGGCGATCGAACTGGC 79051 28 100.0 32 ............................ TGGAAAAAAGGGCTGCTACTGGAAAAGGCAGG 78991 28 100.0 32 ............................ TGCTGGCCAACCTGGAAAACGAGCTGATAACG 78931 28 96.4 32 .................T.......... ATTGCCTGCACCTGGAGGTGCAGACTGTCCCA 78871 28 100.0 32 ............................ TTCCAGCCCCAAAACACCCTGGGTCTGTTCGT 78811 28 100.0 32 ............................ TCTCGGGTCATACTCAGTTGCTGGGCGAGTAC 78751 28 100.0 32 ............................ ACAACGTCTGGCAGTTTTTCTTCCGGGCAGTC 78691 28 100.0 32 ............................ TCCGCATAATTGCGTACTTCGTCGCGAATATC 78631 28 100.0 32 ............................ AATAGCTCGGGTGCGGTCTGCTTCCTCTGCCC 78571 28 100.0 32 ............................ AAAAACTGAGACAACTCATGTTCGGACCATTT 78511 28 100.0 32 ............................ CAATCCATGAAGCATGTTCGCATGTCATTTGG 78451 28 100.0 32 ............................ TGGGAACATGCGCGTTATCGGCTGCACCTTCA 78391 28 96.4 32 ............G............... GATCGAGGATGAAACCGGCGCCGTCGACTGGC 78331 28 96.4 32 ...........C................ ACCTCGATTGATGCGCGCCTGGTGCAACTGAC 78271 28 96.4 31 ...........C................ TTTAAAAGGCATAAACTATACTCCCTGCATA 78212 28 100.0 32 ............................ GGTGATTGTGATTGAGTCCTACATCATCGCGA 78152 28 96.4 32 ....................T....... AGTCGATGCACTCGGCGGCGGTGCGGTATGGC 78092 28 96.4 32 .................T.......... TTGTCGCCGATCCAGTTGAATACTGGCATCAA 78032 28 100.0 33 ............................ ACTCGTACCAGCCATCTGCCATCACTAGCGCGC 77971 28 96.4 32 .........T.................. GACGAGAGATAAATCAACCACCCAGGAAGGAG 77911 28 100.0 32 ............................ GGTGGAGGTCACCCGTTTGAAATGAACCCCTT 77851 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTTGCCATCA 77791 27 82.1 0 ............CC......-..C...T | ========== ====== ====== ====== ============================ ================================= ================== 41 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGCTGACGGCGCTGGGGGGATTCGACTGGCTTAAAGGACTGCGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGTAGCGTAGAGCGTATACGCCGCCGGGCCGTCAATAAAGGTTGGCTGACTGAAGAACAGGCATGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCCTTTATTGCCTTGAAAAGTCTTTCCACCGGACAACATTTTCGCTTGTTCGTGAAACTGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTTAGTTTCTATGGGTTGAGCGCGTCCGCTACGGTGCCTTGGTTTTAACCCTTTTTTTTCGTTCAGAGGTAACGCATTGATTTTGTTGCCTCTGAAAGGTATCTAAAAAATTAGGGGTAAACCGAGGTATTTGCCTGTTGTTCTTTAATAATCAGATCGTTAGTGATTTTTTCGTTCA # Right flank : AGAAGGGATAAAACTTTACCGACACCTGTTAACGGGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTACCACGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGTAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCGTCACAATCCCATCCCCGGCCGCCAGAGCCTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 89362-88671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKCJ010000008.1 Serratia ureilytica strain SER00257 SER00257_c0008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 89361 28 100.0 32 ............................ ACTCCAACACGGCGCAATCCTACAGCGGCCAC 89301 28 100.0 32 ............................ TTATTCCGAAATCAGTGAACGGGCAACGGCTT 89241 28 100.0 32 ............................ ATCAGCGTCAACTTGCCGAACACATCAGTAAC 89181 28 100.0 32 ............................ ACCAGCGCCGAAGCCTTCCAACGTTCGACAGA 89121 28 100.0 32 ............................ TCGAACCTTTCGATAACGCAATGGCGGATATT 89061 28 100.0 32 ............................ CTACACCGATAAAAACGGACACCTGAATTCAA 89001 28 100.0 32 ............................ TTCAGCAAACCAGCGGTAGCCGTTTGAATCCA 88941 28 100.0 32 ............................ AGAACCTTGTTTTTTGAACGGAATGGCGCTAC 88881 28 100.0 32 ............................ AATAACAACAGTGCCAGGTAATGACCAGCTAA 88821 28 100.0 32 ............................ AAACTGTGGGGCGTGTTCCGATCTGCGTTTGC 88761 28 100.0 32 ............................ TTGCCACGGGTGCGGAACAATTGCCCGTCGAT 88701 28 96.4 0 ....................A....... | G,A,A [88674,88678,88680] ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCCGCCTATGGCCTGAATTGTCGCTGGCCGGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGCAAGACGCTCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCTGCGCCGTTTAATCGCTTTTAACGGCCGGCAATAGAGACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTGAACAATTCAGTTCATCTGTCGTGTCTCTGCGTCGCAGTGAGACGGATGGTGATACCAAAGAGGGAACCTATAATTCCCCCCTAAAATGTAGAAATGTCACCTTATTCCATTCTTGATTGCTGAACCCTTTTTTGAATGTCAATTTTAATTTATTGATTTAAAACAATATTATTAAACGCTTTAAAAAAGGCTTTTTGAACGGGTATTCCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATACAACG # Right flank : AAGTAATATGTATTTGGCTCATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTGTCCGATTGATGGATATTGACTCGGTTGCAGCGGATTTCCCTGGAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATGCCCTCTCTTCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCCCTTTACTGGAACATCCCCATTGCCAACACCACCGCCATCATGCTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGGGTTTTAGTCGGATTCTGTGGCGGCGGCGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //