Array 1 39631-36001 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDJ01000006.1 Salmonella enterica subsp. enterica serovar Corvallis strain BCW_2669 NODE_6_length_282459_cov_0.411669, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39630 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 39569 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 39508 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 39447 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 39386 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 39325 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 39264 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 39203 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 39142 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 39081 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 39020 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 38959 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 38898 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 38837 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 38776 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 38715 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 38654 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 38593 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 38532 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 38471 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 38410 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 38349 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 38288 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 38227 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 38166 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 38105 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 38044 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 37983 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 37922 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 37861 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 37800 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 37739 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 37678 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 37617 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 37556 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 37495 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 37434 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 37373 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 37312 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 37251 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 37190 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 37129 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 37068 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 37007 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 36946 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 36885 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 36824 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 36763 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 36702 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 36641 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 36580 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 36519 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 36458 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 36397 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 36336 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 36275 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 36214 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 36153 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 36092 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 36030 29 96.6 0 ............T................ | A [36003] ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57425-56177 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDJ01000006.1 Salmonella enterica subsp. enterica serovar Corvallis strain BCW_2669 NODE_6_length_282459_cov_0.411669, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57424 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 57363 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 57302 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 57241 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 57180 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 57119 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 57058 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 56997 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 56936 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 56875 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 56814 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 56753 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 56692 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 56631 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 56570 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 56509 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 56448 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 56387 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 56326 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 56265 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 56204 28 86.2 0 .........A..T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //