Array 1 1273711-1277586 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054619.1 Azospirillum oryzae strain KACC 14407 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1273711 32 100.0 35 ................................ GTCGGGAGTGCGGCAGATGATGGTCATGGGTCAGC 1273778 32 100.0 35 ................................ ATCGCCGACGCAGCGTCGATGCTGCCCTAAGGCTT 1273845 31 93.8 33 .T...........-.................. ACGATGCTGGTCAGGTGGTACGGCGGATCGCTG 1273909 32 93.8 35 .T............A................. TCGGCGTTGGCGATGCGGGACTCCATCAGGTCCAG 1273976 32 96.9 35 .T.............................. ATGTGCCGGCGGGCCGCCGTGTTGCCTTCCATCAA 1274043 32 87.5 34 .T.C....T.G..................... CGGGCCATGCGGCGAGCACCCTGCGGCGAGGATG G [1274062] 1274110 32 93.8 34 .T..........A................... CGCCGAGCCTGGGAAATCGTTCGAGTTACCCGCC 1274176 32 81.2 35 .T.C.T......A..........A...A.... AAGCCCAACGTGTTGGTGCTTCAGGAGAAGGTCTG 1274243 32 78.1 35 .T.C........A.CT..T............G CTGCGGGCTTATACCGGCTGGCGGCAGAGGGGAGC 1274310 32 78.1 33 .T.C...TT...G...A.C............. CCGACAAGAAGGCCCGTATGGAGACCGACGCCG 1274376 32 84.4 35 .T.C........GT.A................ TCCTCTGGTGACATCTCGTCATCAGCCCGAATGTG 1274442 32 78.1 35 TC.C......C.TT.................G ATCTGTGCCTCAAAGACGATATTCGGGTTGTCGAT 1274509 31 78.1 32 ...CT.G...-.A.A....T............ TCGCTGATCTGAAGAACTTGTTGCTCGATGCG 1274572 32 62.5 34 .TAGT.TTG.C..AC.....C.....G..... CGCAGCGGGATGTGCTACGGATACAAATTCTTGG AA [1274590] 1274640 32 71.9 35 ..C.CGT...T..AC...A........T.... GGCTTCGGCCAGACGGTAAAGGACAGATACTATAT A [1274657] 1274708 32 65.6 35 .TC.CG.T..TTAAA....T............ TACGGTGGCGACGCGTTTACCTCGGGCACCGCCAA 1274775 31 75.0 32 .G.C........ATA...-.A....C...... GGACTAGACCGACCGCGGCGTAATTTGGCCGC 1274840 32 84.4 35 AT.C........G.................G. CGCCGCTGGAAGGCGGTGACGCCGTGACCGACAAC C,G [1274850,1274860] 1274909 32 75.0 37 TC........TTA.AT........G....... GGGACGTAGCTGATGACGATGGTCGCCTTGCCGACCG 1274978 31 78.1 33 TC.C..T...GT.-.................. GCCCGTGAGGCTGCCGAATAGGAGGATGCGGGC 1275042 32 75.0 33 C...T.G...T..G..A.......G..A.... TACGACGGCCTCGACAGGCTCAACCAGGGCGAC 1275108 32 68.8 33 .G..T.G...C.ATAAC.........A..... ACGGCAGACCTCAAGGCCCACCCCACCTATGTG 1275173 32 87.5 33 .G.C........G.C................. CGCCTCGACGTCGAGACCGACAGCACCATCGCC 1275238 32 75.0 34 .C.CT.G.T.C..A....A............. TGCGATCTCGGAACCCCGAAGGCCGAGGGCTCCT 1275305 32 81.2 35 .T.C.....A..A...A.....A......... CCTACGACCACTCGACCGATGCTACCTGCCTGTTG 1275373 31 75.0 33 CC.....T....GA..CA.-............ CGAGGGCGTGGCGGGGGTCACGGCCGACGACTG 1275439 32 78.1 34 TC........CA.G.....T....G....... GCACAGGGAAGGATACCTTCCTCCCAGCCGGGAA 1275505 32 81.2 32 .CCC........G.A....T............ CGCTATGTCCGCGACGGGGTGACCGTCTGCGA C [1275515] 1275570 32 78.1 33 .GG.T.......AAT........A........ TGGCACGACGCGGTCCGCGAGGTGTGGAGCAAG 1275635 32 84.4 34 .T.C........A.AA................ ACCAACTCGACCCTGCTGCGGCTCTGGAACTCCG 1275701 32 84.4 33 .T.CA.......A...A............... CCGCTTCCCACGGGAAATTGGAGGCGAAAAGCT 1275767 32 68.8 34 AG.CT.G.T.C.A...A.............C. TACAGTCGCGACGCGTTCACCTCGGGCACCGCCA 1275834 31 62.5 35 .G.C.T..AAG.A.T...-...A..A....G. CGGGGCTAGACCGACCGCGGCGTAGATCCGGCCGC 1275900 32 78.1 33 AT.C......CA.GT................. AAGGCGGTGATTACGTCAGAATCCTTCTGGGAC 1275965 32 75.0 34 CG...GT..T..A.A...T............. TGCTGCGTCGTGGCTTGCGTCTGAGCCTCGCTGG 1276031 32 81.2 35 .T.C..T.....G.A.A............... GACCTTGAGGTCGACAACATGGACCTGCTCGAGGC 1276098 30 84.4 35 .T.C........A......--........... CAACTAGGCAATTTCGACGTTTGGACGTTGGAGAA 1276163 32 87.5 34 .G.CA.......G................... TACGACCTGAAGCACAAGGCCGACGAGACCTGGA 1276229 32 81.2 34 .T.C...T....AT..A............... TTGAACGGGTCGAGAAGCTTGAAGACCTGTGCGG 1276296 32 87.5 35 .T.C...T....G................... GGCATCGGCCAGACCGCTGCCAAGGGCCTCTATGT 1276363 32 90.6 34 .T.C........A................... CCGCTCTACCCTACGCACGCCGCGGTGATCCCGT 1276429 32 65.6 32 .C.CT.G...C.AT...AAT...A........ ATGGGCCAGAAGCCCATAGAGGAGCCCAGGAC 1276494 32 68.8 35 ..ACT.G...CTTAC.T............... AATTGAGGCGATCAGGCGTTCCGTGCCGACCCCAA 1276561 32 87.5 29 .T.C........G..........A........ ACGCTGTCCGCCACCGGTAAGAGCCTTGC 1276622 32 78.1 36 CG...GT.T.G..T.................. ACCGAACGCGGACAGGCGGCCTCGTGATCTGGACCG GCCA [1276635] 1276693 32 75.0 34 TC.C..T...C.T.A...........C..... CTCGACATCGGGATCAATGGCACGGCAGAGCATG 1276759 32 81.2 35 .T..CG...TC.T................... GGATTCGGCCAGACGGCAAAGGACGGATACTACAT 1276826 32 62.5 33 .GC.CG....CTATA.......T...C...G. AGCGGCCGGGTCACGTTGTGGACATAGGCATCG 1276891 32 71.9 35 .G.CT.GT..T..AC....T............ GACGGTGAGACGCCGACGACCCGCTCGAAGCGGGA 1276958 32 71.9 31 .TC.CGTT...TA...C............... TTCGCCACCTCGGCAAAAGCCGGGGCGGACT 1277022 32 62.5 32 .CG.CTT.G.T..ACT....AC.......... ATGCCGGCCGACAAGATATTCGGCTATGCCGA 1277086 32 68.8 36 .CG.CTTT..T..TT......C.......... GCTGGCCTGGGCGGTGCCTGCCATGGTCTGGAAGAG AA [1277105] 1277156 31 87.5 35 AC..........G-.................. CTGAACACGTTCCAGTTCAACCCGATCCCGCAAGC 1277222 32 87.5 34 .T.C.........A.....T............ GACGGGTTCGCAGGGACCGGGACGACCGGCGTCG 1277288 32 87.5 35 .T.C........G.......A........... TCGTAGCGGCCCGGCTTGACCCGCCCGACCTTGCG 1277355 31 87.5 35 .T.C........G.....-............. ATGCCCCGCTGGTGGGCGATGTCCGAGCGTGTGAT 1277421 32 87.5 34 .T.C........G..A................ AAGGTCATCCTGGGCGATGACCCCGGCGGCACAG 1277487 32 87.5 36 .T.C.....A..G................... GGCAACTGGGTCGCGGGCGACGAACGCCAGAAGGCC 1277555 32 81.2 0 .T.C...T..T.G..................T | ========== ====== ====== ====== ================================ ===================================== ================== 59 32 80.0 34 GATTGCCCCCACCCGGGGGCGTGGATTGAAAC # Left flank : AATGCCCCCTTGGGAATCCAGAACGGCATGACGGCCGACGACATGCGGCTCCTTTGGGAGTCGATGATGAGGATGTTCACCCTGGACCACGCTGCCGGCCGGGCCATGATGCGGATGCGGGGACTTTATGTCTGGTCCCACAAGAGCCGATATGGCGACGCTCCATTCGATCGGCTCTTCGACATGGTGAAGGTCGCCAAGATCGTGAAGTCCGAGACGGAGATCCCCCGGTCGTTCGAGGACTACCAAATCAATGTTGGGGAACTCGAACCAAACGACCGTATCGTATTCACCCGGCTGATTGGTTGACGAGACGAACAGGCTGCGAACGTCCATTGGACGCAGAATCGCCAAGAGGATCGCGGATGCGATAACACATTGGGAAAATCGGGTTTTTTTAGCTTCGAGAGCCAGCCTTGCGGGCTTGGCCGCTGGTCTTCGACGGGGTTCGCGGAGCATGGGTCTTTGAACCAGTGAATACAGTGGGTTATGTCAGGGGA # Right flank : TAGGTGGAAGTATGAACCCGTAGCGATTCTGCCCCTACGAGAGGTGCAAATTGCAGGTTTCCAGGAAATCGTCCAGGACGGCACTGTGGGCGAGACCTCGCCGAAGCAATCAGGTGGGCGTCTCGCCCGATGGCCGAGTTCACAGGATCACATCCCGAACCGTACTGGGATGCGACCGCCTCCTGGCGTTCAGGGCGTCGGCGAGTCCCTGGACGATGGTGACCCCCGTCCGGTCGATCTCGGCGGTGATCGGCATGACCCTGCCGGCATATTCGTCGGCTTGGGTCTGCCGACGTGAAGGAGCAGATCGGGTGACTTTGGCGAAGTATCGGCTCCCCAGCGGCTCGCTGCGATCACGTGTTACCAGCAGATCGTGACGATTCCACTCCGAGATCAACCGCTCTTCCTTATCGGCCGGGGTAGCCCAAAGGTTGCGGCTGAAAACGTTACGATCATCGTCATGGTCACGTCGCCGTCACTGCTTCTGTGGTGCTCAGCTT # Questionable array : NO Score: 7.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.05, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTGCCCCCACCCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [56-63] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //