Array 1 124848-125242 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV805193.1 Corynebacterium sp. HMSC078A10 Scaffold28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124848 29 96.6 32 ............................G GAAAATTGACCGTGGCTACTAATCGACCTCCT 124909 29 96.6 32 ............................G TCTGGTGCGAGTAGGTTAAGTTCGTTTAGCAG 124970 29 100.0 32 ............................. CAAAGCAGCAAATAACGAATGGCAAGACCCCT 125031 29 96.6 32 ............................G AAATCCTTCGCCACGTAGGGCCTAACTTCGAC 125092 29 100.0 32 ............................. TCGCCGTGGCTAATCCCGGCCAGTGAGCTCAC 125153 29 100.0 32 ............................. GCAACCTTGTCGGCTACGCGCTCACCAATGCG 125214 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.1 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : AACTCGAAGTCATTGCTTCAGGAGTGAATTGGGCCGAAGAGGAGACACTTTCGTGATCGTTCTTGTCGTAACTGCATGCCCCGCTGGGCTTCGGGGTGACTTATCAAAATGGCTGATTGAACTAACGCCGGGTGTCTTTGTCGGCCGCCCTTCCGCACGAATTCGTGACTTGTTGTGGGAGCGAACCGTTGAACTGTGTAAGGACGGTAGAGCATTACTGGTCTATTCGGCAGCAAACGAACAGGGTTTAGAATTCCGGACTCACCGGCATCATTGGCAACCACAAGACTTTGATGGTGTCACGCTCATGGTTCGTCCTGCTCCTGGAAGCAAGAAAGTTCAAAACAGGACTGGTTGGTCACAAGCCCGACGGATTCGTTCGGCATACCAGAAACAGAAACGAAAATAGCTGAGGAACTCTAGACAGGTTCTGTGTCTCTTCCGAGAAGAAGCCGTATGTAAACTGAGGGTTCGGCTCCTTTATACGCTGCTCAGCAAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGCTCCCCGCGTGAGCGGGGATGAGCCCTGATGGGGATGTGTTCTTTGAGCGTGAGATTAGTGCTCCCCGCGTGAGCGGGGATGAGCCCCTATTTACCTGTAAGCCTGGGGAGTCTAAAACGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCAGCCCGCGCCGCGATAGACAGACTGGTTCAGTGCTCCCCGCGTGAGCGGGGATGAGCCCACCCCCACCGCCCACTCCACACGAGCATCGCCGTGCTCCCCGCGTGAGCGGGGATGAGCCCCATTGGCCTTCGTCGGTCACAACCTGGTCAATGTGCTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125343-125615 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV805193.1 Corynebacterium sp. HMSC078A10 Scaffold28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125343 29 100.0 32 ............................. TGATGGGGATGTGTTCTTTGAGCGTGAGATTA 125404 29 100.0 32 ............................. CTATTTACCTGTAAGCCTGGGGAGTCTAAAAC 125465 29 96.6 32 ............................G GCAGCCCGCGCCGCGATAGACAGACTGGTTCA 125526 29 100.0 32 ............................. ACCCCCACCGCCCACTCCACACGAGCATCGCC 125587 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : CAAGTGTGCTCCCCGCGTGAGCGGGGATGAGCCGGAAAATTGACCGTGGCTACTAATCGACCTCCTGTGCTCCCCGCGTGAGCGGGGATGAGCCGTCTGGTGCGAGTAGGTTAAGTTCGTTTAGCAGGTGCTCCCCGCGTGAGCGGGGATGAGCCCCAAAGCAGCAAATAACGAATGGCAAGACCCCTGTGCTCCCCGCGTGAGCGGGGATGAGCCGAAATCCTTCGCCACGTAGGGCCTAACTTCGACGTGCTCCCCGCGTGAGCGGGGATGAGCCCTCGCCGTGGCTAATCCCGGCCAGTGAGCTCACGTGCTCCCCGCGTGAGCGGGGATGAGCCCGCAACCTTGTCGGCTACGCGCTCACCAATGCGGTGCTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : CCATTGGCCTTCGTCGGTCACAACCTGGTCAATGTGCTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCAACGAGGGCCAGGCCCACGGTAGCGACGATGTGCTCCCCGCGTGAGCGGGGATGAGCCTTTGTTTGGCAGCTTTCACAGACTCCCATCCAAGTGCTCCCCGCGTGAGCGGGGATGAGCCGTGCGCGCCCCAGTCCTTGACAGTCATGACGTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCCTCGGCCATGGTGGGGCGCGGTTTGGGAGGCAGTGCTCCCCGCGTGAGCGGGGATGAGCCCATGGGCCTGGCTGGTACGGCGTCGAGGAGCCGGTGCTCCCCGCGTGAGCGGGGATGAGCCGTACAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 126394-126910 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV805193.1 Corynebacterium sp. HMSC078A10 Scaffold28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126394 29 100.0 32 ............................. GAATACGCATCGCTCACAGTCATGTGGTCATC 126455 29 96.6 32 ............................G TTTGGCGAGGGTGAGGGCAAAGCCCGCCGCTG 126516 29 100.0 32 ............................. TACTCGGATACGAATGGAAATGACATGACTGA 126577 29 100.0 32 ............................. GTTCTGCTGCGCCTGCTGCGCCGTGGGCTGCG 126638 29 100.0 32 ............................. TGCTGATTGGTTTCGGACGCGATGCGCGCAAG 126699 29 96.6 32 ............................G ACGCCGAGCACGATATACGGAATCATGTCGGC 126760 29 100.0 32 ............................. CACTGTGAGAATTTTTCACGCAAAGTCATTGA 126821 29 100.0 32 ............................. CCGGAAGACCTACAAGCCGAAGCGGCGCAGCT 126882 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : CCAAGTGCTCCCCGCGTGAGCGGGGATGAGCCGTGCGCGCCCCAGTCCTTGACAGTCATGACGTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCCTCGGCCATGGTGGGGCGCGGTTTGGGAGGCAGTGCTCCCCGCGTGAGCGGGGATGAGCCCATGGGCCTGGCTGGTACGGCGTCGAGGAGCCGGTGCTCCCCGCGTGAGCGGGGATGAGCCGTACAAGGTTGCGGTGGCGTGCTCAGCAATCGAGTGCTCCCCGCGTGAGCGGGGATGAGCCGACGGAAGCTACTCGTACTACGGGTGCGGAGAGGTGCTCCCCGCGTGAGCGGGGATGAGCCCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGTGAGCGGGGATGAGCCCTGGAACGCGTTACCGCTTAACGTGCGCCGCGT # Right flank : CCGGCATCCTCCTAGGTATCGGGGATGACAATAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGTGAGCGGGGATGAGCCCCAATGAGCACACCAACCCGCCAAGAAATCATCGTGCTCCCCGCGTGAGCGGGGATGAGCCCTCTTCATCCTCGGCCTCAGGCCACAGGTCGGTCGTGCTCCCCGGGTGAGCGGGGATGAGCCCAAACTCGCCGCCCCCGTAAGAGCCGATCTTCCGTGCTCCCCGCGTGAGCGGGGATGAGCCGCAAAGTCCAGAGCATTCGGCGCGCCACCAATAGTGCTCCCCGCGTGAGCGGGGATGAGCCCCAGGCTAGCCCTGGGTTGATGTCTTGGGCGACGTGCTCCCCGCGTGAGCGGGGATGAGCCCCAGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //