Array 1 281804-284235 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVKJ01000002.1 Akkermansia muciniphila strain BIOML-A41 scaffold2_size384175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 281804 31 100.0 34 ............................... TTTTAGTTTAACTTATTTTATTACCTTGTCAACT 281869 31 100.0 34 ............................... AACGTTTTTGGTAGTCACAATGTGGAATCCGTTG 281934 31 100.0 33 ............................... TATCTTGTTGTCAAATGTTTTTTGTTTTTGTAT 281998 31 100.0 34 ............................... ATCGCAAAAGTCACGATAGGAACCGCAATCGGAT 282063 31 100.0 33 ............................... CTATTGTTTAATGTTTAGTGTTTTATTGTTTGG 282127 31 100.0 33 ............................... CATGTCATGCCGTTTTCGTTGGTTTTCAGTGGA 282191 31 100.0 35 ............................... ATGATTTAGTTTCCTTTCTTTTAGGGGGTTATGCG 282257 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 282322 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 282387 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 282451 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 282516 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 282581 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 282646 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 282711 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 282776 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 282841 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 282905 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 282970 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 283035 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 283100 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 283165 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 283230 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 283295 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 283360 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 283425 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 283490 31 100.0 34 ............................... TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA 283555 31 100.0 34 ............................... TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG 283620 31 100.0 34 ............................... AGCATCTAAAATATGTGCGTAAGCTTCGACACGG 283685 31 100.0 34 ............................... ACATTATATCATAAAAATAAGAGAGTTATGAACA 283750 31 100.0 34 ............................... GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA 283815 31 100.0 34 ............................... TTATCGTCCAACGAAATAATGACGTCCTTCCACG 283880 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 283945 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 284010 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 284075 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 284140 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 284205 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 38 31 99.7 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 385870-381349 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVKJ01000004.1 Akkermansia muciniphila strain BIOML-A41 scaffold4_size504063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 385869 33 100.0 34 ................................. AGGAGAATTGTTGTAACTGCTTAATGGTTATACA 385802 33 100.0 34 ................................. ACCCGTAGGTAAAATAGACCAGACCGCCGTTACA 385735 33 100.0 34 ................................. GATATATTTGCATGGGACGTTGCCCCCGCCCTCG 385668 33 100.0 34 ................................. ATCCGCAATGTTAAAGGCTCTACGGGCGGCGTAG 385601 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 385534 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCTTCCCATGTGTGC 385467 33 100.0 34 ................................. CTTTCTTTTAGGGGGTTATGCGGGGGTGATTCCC 385400 33 100.0 34 ................................. AGAAGGGCCGGGGTTAAACCCGGCTGACTAGCTT 385333 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 385266 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCCTGCCACATGTGC 385199 33 100.0 34 ................................. TCCATCTTGCAGTTTGATTTGAGTGATCATGATT 385132 33 100.0 34 ................................. AGTGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 385065 33 100.0 34 ................................. CCCGGTAGGTAAAATAGACCAGACCGCCGTTACA 384998 33 100.0 33 ................................. TGAGACGTCATAGTTAACGCCCTGCCACATGTG 384932 33 100.0 34 ................................. TTTAGTTAGTGGTTTTGTTGTCCGGGGGTTGCCC 384865 33 100.0 34 ................................. CGTCACCTATGGGGCGGGGTTGCCGTGTGATAAG 384798 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 384731 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 384664 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 384597 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 384530 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 384463 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 384396 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 384330 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 384263 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 384196 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 384129 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 384061 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 383994 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 383927 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 383859 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 383794 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 383726 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 383660 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 383594 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 383527 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 383460 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 383393 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 383326 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 383259 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 383193 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 383126 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 383059 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 382992 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 382925 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 382858 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 382791 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 382724 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 382657 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 382590 33 100.0 35 ................................. TCCTATCGAACGCACGTTGCCACCATTGACCGAGC 382522 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 382455 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 382387 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 382321 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 382254 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 382186 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 382119 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 382052 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 381985 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 381917 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 381850 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 381784 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 381717 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 381650 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 381583 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 381517 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 381450 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [381427] 381381 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 68 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //