Array 1 251897-249549 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQML01000001.1 Neisseria lactamica strain M37073 M37073_HUY4067A167_cleaned_ctg_8224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 251896 32 100.0 34 ................................ ATAATATTTTAGGATATTGTCGTAATAATTTGGG 251830 32 100.0 33 ................................ CCTATTGATTGGGTGCGCCTTGAGCTCCAGTGC 251765 32 100.0 35 ................................ CTGTTGGGAATAGCATGTGCAATCTGATTTTCCGC 251698 32 100.0 35 ................................ TATTAAAAAACTGCGACAGTGCGGCCCTGATGGGT 251631 32 100.0 34 ................................ GTGATGTCATACCGGAAGGCGCAGTGCTGATTGT 251565 32 100.0 34 ................................ TTAACCACGCGTCCGCCCTAACGGGCATTAAGAA 251499 32 100.0 34 ................................ CATGTATGCCATTACACCCACACCACATGAAACT 251433 32 100.0 34 ................................ CCGAAATCACGGGCAACCGCCTACCGCTGGCCGT 251367 32 100.0 33 ................................ AAGTAATCCCGCGTCCCGATTTAACCCCCGGAA 251302 32 100.0 34 ................................ TTGGTACAAATGTGTAACGTCGTTGGATAATCCG 251236 32 100.0 35 ................................ ATCAAGTCGTTTTGTGCTTTCATCAATTCTTGTGA 251169 32 100.0 34 ................................ TTCCATAAATAAACCAAATGTTTAAATTTAATAC 251103 32 100.0 34 ................................ CTCCATGCTGTCGCCGGTCAGGGTGCAGCAAAAC 251037 32 100.0 35 ................................ AATAATAGAACACGTGCTAACAGGTGCACGCTCTC 250970 32 100.0 34 ................................ GGTAATCCGGTATGTACTACCAAGTCGGAAATAA 250904 32 100.0 34 ................................ CCGTCAAATCCAAAAGACGGATGCGCCTGCCCGC 250838 32 100.0 34 ................................ CCGTCAAATCCAAAAGACGGATGCGCCTGCCCGC 250772 32 100.0 35 ................................ CTTTCAAAAAAGCCACCATATTTCAGGCGGCTTAC 250705 32 100.0 34 ................................ TTTTGCTTTGTCATAAATACGGGAAAATACGGAG 250639 32 100.0 33 ................................ GTCGATTTTGGCGCATCGTATTGCCGCGTTTAA 250574 32 100.0 34 ................................ TCTCAATTGACTTGCCGCTTGTGGATATGCGGTC 250508 32 100.0 35 ................................ CGAAAACGGTATTAAAAACTATGTCTGCTACGGAG 250441 32 100.0 33 ................................ GTTGATGATGTTCACGTTACCGCCGCCTCCGTG 250376 32 100.0 34 ................................ AATTTCGGCAATATCGCCGTTTCTTTCCGTGAAG 250310 32 100.0 34 ................................ CAGATTGGAAGTGCCTTAGGTTATAAAAATCCAT 250244 32 96.9 33 ......A......................... ATTTGCACCCATTGGGAGAACGGAGCGGGCGAC 250179 32 100.0 34 ................................ CAGTGTGTTGCGGGCGCGTTGCCCTTGACGGCTG 250113 32 100.0 33 ................................ CCTTTTAAATCCTAAAAGCCCGCGTTGTCCTTT 250048 32 100.0 33 ................................ ACAAGCGGAATCGCACCGTTATTGCGATATTTT 249983 32 100.0 34 ................................ AAGCTGAACAATCTGTACGTGTTGAGTTTCAGAA 249917 32 100.0 35 ................................ TTTTAATTCTTCCATTTCAAGCTCCTATCTGGTCG 249850 32 100.0 35 ................................ CTGTCCGTGGCGTAAGAACCACTACATAGGCGGCA 249783 32 100.0 39 ................................ AACACGAAATTGCGCGGGCAAATTGGAAGAACATTGTTC 249712 32 100.0 35 ................................ TGAAACTGCGAAGCCAACCCCCCTTACTAACAGGG 249645 32 96.9 33 ........A....................... AAGGCAGAAATTGATTTTGATTTCGTCACCAAC 249580 32 93.8 0 ............G.......A........... | ========== ====== ====== ====== ================================ ======================================= ================== 36 32 99.7 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : GGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCCGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAACAGGTTGATATTATCCGCACATATTAATATAATGATAATTATTATTAATCAAATAGGGAAAATGTAGGGATGTGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGCTGGCAGCCTGTGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCCCCTGCCAAACCTTCTATAGAAACCACGCCGGTCAACCGGCCCGCCGTCGGTGCGGCAATGCGGCTGCTAAGGCGGAATATTGCTTTTCATCGTGAAGATGGCACGGAAATTCCCGATAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //