Array 1 4308-3620 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAIF010000028.1 Legionella nautarum strain 1224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4307 28 100.0 32 ............................ CAACAATGCCATCACGCCCTATTTTTTCCCAA 4247 28 100.0 32 ............................ TCGAACTGCTGCTAATTTGTCTAATGACTTAT 4187 28 100.0 32 ............................ TATAGGACGTGGAGCTTTAGTGCCTACTTTTG 4127 28 100.0 32 ............................ TCGTGCTAAACGTCTTGCTAATATGGTTGAGG 4067 28 100.0 32 ............................ AGCATGGGTTTATTAGGGTCAAATACGGCTTT 4007 28 100.0 32 ............................ TTATCTTGAAATGGCAAACGCACCTCGTGCTA 3947 28 100.0 32 ............................ TGACGTTTGATCGTGCTCGCGATGAACCTTAT 3887 28 100.0 32 ............................ AAGACGCGGCATTAAACTTTTCATAATTACCC 3827 28 100.0 32 ............................ GTCCGCATCTGCCCACATAAAGGGATTGTTGC 3767 28 100.0 32 ............................ CGACAAAGGCATGCAAAATGTGACAATCAATC 3707 28 100.0 32 ............................ ACTGGAGTACTTTAAAATCAAATTATACCCAC 3647 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCTCGAGAAATTTAATGCAATAAAATGGTTAAATAATTTCTCTGATTATGCTCACATAACTGGAGCTCGTGATGTCCCGGGTAATATAACCAGTTATGTTCGTTTCAAACGAAAGCAATCGAAGTCTAATACTGAACGCATAGCTCGAAGAAAGGCAAAGCGGGAAGGGATTGATTTGGAGAGTGCGATGGGATTATTAAAAAATCATAAAGAATCATTAATACGCGCGCCATTTATAAAAATTTCGAGCCTAAGCTCCAAAAACACATTTAAGCTCTTTATTTATAAAGAACCCTCTGAGGAACTTATAAATAATGCATTCAGTTGTTATGGTTTAAGTTCTGTATCAACGTTACCTGACTTTTAACCTTTATTTTTGCTGTTCTTTAAAAATTTATTTAAATCAATAGGTTGCGAGCATATAAAATATCAATGGTTACACATCGATATTTTATACTAGCTTATTGTTTATTAAATTGATTTTAAGTGTGAAATTTGG # Right flank : ATCTGTTAAAATCCAGTCAATTTGCAAATATTGTTAACTGCCGTGGTCTAATAGATTTTGACACCCCAGTTAAGAGATAATGTACTTAACTGTAGAAAAAAATGGTGGCAAGAAAGAAGTATTCTAAAGAATTCAAACTTGATGCAGTTAGTCTGGTATTAGAACAAGGCTATGGCTGCACAGAAGCGGCTAAAAGTTTGGGGATTCATCAAGCTCTACTTAGTCGCTGGCTTAAAGAGCACCAAGAGCCTGATGGGCAAGCATTTCGAGGAAATGGCAAGTTAACAGCAGAACAATTAGAGATACGTCGCCTGCTGGAAGAAAATAAACGCCTGAAAATGGAAAAGGAAATCTTAAAAAGGGCGGCGGTCTTCTTTGCTCAAGAAACGAAATAAAATATTCGTTTGTCGCCCAAAATAAGAAGACCTGGCCAGTTGGCTTAATGTGCCAACTCCTGGGCATTACACGGCATGGATATTACAGTTATCAACAACGGCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //