Array 1 520117-519487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKLI010000002.1 Providencia rettgeri strain 2021EL-00130 NODE_2_length_565643_cov_37.675192, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 520116 28 100.0 32 ............................ TGCATGTTGCGCTTCCTTAAACACGTCGATTA 520056 28 100.0 32 ............................ AGCCCAAAGAGGGTTAACCAAACCACTACTGG 519996 28 100.0 32 ............................ AGTGCTATACAACAAAACTGGCTCGCCTATTT 519936 28 100.0 33 ............................ GCTTGCACTGCCTGCGCTATTTTTGGCTTGTTC 519875 28 96.4 32 ........T................... GCTATATCCTTGTAGTACTGGAACTTTATTAC 519815 28 100.0 32 ............................ ACTAAATGCCAGTAGGCAGGAGTTTTAAAATG 519755 28 100.0 32 ............................ AGAACACTTTAACCGTATCGCTATCAATCGAT 519695 28 100.0 32 ............................ CCCATGTATAAACTCACGGCCTAATAACTTAG 519635 28 100.0 32 ............................ TGTCGAAATTCAAAACTGTCAAAAGTCTTATA 519575 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 519515 28 89.3 0 ...T......A.........T....... | G [519489] ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : GAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAATCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 530103-528754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKLI010000002.1 Providencia rettgeri strain 2021EL-00130 NODE_2_length_565643_cov_37.675192, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 530102 28 100.0 32 ............................ ATATACAGAGTATATTGATGATAACTTTGAAT 530042 28 100.0 32 ............................ TTCCAGCTTGAACGAGAGATGGAAGTCGTTAA 529982 28 100.0 32 ............................ AGAATCAGGACCCAAAGGAGACCCATTAGTCG 529922 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 529861 28 100.0 32 ............................ GCCATGTTGGTGAGTATGAATAACCACACCAT 529801 28 100.0 32 ............................ TAAAGGGTGGTGGTCAGGCGACGACAACAAGT 529741 28 100.0 32 ............................ ATGCTTTACTACAAACTGGCTTGAAGCCTTGT 529681 28 100.0 32 ............................ GATATTTGCTCTGCATCATCCTGCTCGCTAAC 529621 28 100.0 32 ............................ ATAATCCCTTGCTGCATTCCAGACGGTCTATT 529561 28 96.4 32 ............G............... TGAGTAAGCAAATCATCACGATAATCATAGAA 529501 28 96.4 32 ............G............... TTGTTCAGATAGCGGAAGCAATCGGCATGAAT 529441 28 96.4 32 ............G............... AGTTCCGTCACATATTAAAGAAAGCAAATATA 529381 28 96.4 32 ............G............... ATCCTCAGAACTTGAGAAAAACACATTAACTA 529321 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 529261 28 100.0 32 ............................ GTTATAGCGTACCGATGTGGTACCCCGACTAT 529201 28 100.0 32 ............................ ATACGCACTTGCAGTCTCGAAGTGATTACTAT 529141 28 100.0 32 ............................ GTCAATTTCATAGTTAAAAATATTTTTTCCGT 529081 28 100.0 32 ............................ CTACGGCAAAGATGAAGAGATGGAGCTGCAAG 529021 28 100.0 32 ............................ ATTGATATTGTAGGGACACAAAAAAAACTAGG 528961 28 100.0 32 ............................ ACATCCGGTGCCGGTAATAAACTTAAATCAAT 528901 28 100.0 32 ............................ TTGAATTTTCTTTCTCTGAAGCACTGATGCAA 528841 28 100.0 32 ............................ CTACCCACGCCACGCTATTTATGTGATTTAAC 528781 28 92.9 0 ......................A.A... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.1 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCACAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //