Array 1 131060-133114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAITYR010000012.1 Streptomyces griseocarneus strain CGMCC4.1088 Scaffold12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 131060 29 100.0 34 ............................. CTGCGCATGACCTCCGAGGAGAAGCGGATTGTGT 131123 29 100.0 32 ............................. GCGACGGTCACCACGCCCCCGGGCCTGGGTGC 131184 29 100.0 32 ............................. GGTGAGGGCACACAACCGCGCCGCCGCACCTG 131245 29 100.0 32 ............................. TTTGCCGACCTGATCACTGATGTTGTGGCGGT 131306 29 100.0 32 ............................. CCGTTTGTTGGGATCATGGGCTGGGTCATGCT 131367 29 100.0 32 ............................. GCCGGGTGCTCCGGAGTTCAACCGATCCCCTT 131428 29 100.0 32 ............................. GATTCGGGCATATGTCGACTCCATCAGCACAA 131489 29 100.0 32 ............................. CGGGCTCCGCCGGCGCCTCGTCAGCCGACGCG 131550 29 100.0 32 ............................. GAGGGCAAGACCATCGGTGAACCGCGGACCTT 131611 29 100.0 32 ............................. GACCAGTGCCCACGGGGGCCGGGGGTCGGCCG 131672 29 100.0 32 ............................. CTCTCCTCTTCGAGGTCCGCGTACAGGTCGAG 131733 29 100.0 32 ............................. GACGGGGGCCGCTCCCGAAACGCGGGCGGCTG 131794 29 100.0 32 ............................. GCCCGGCTGGCGCCAACCAGTCGATGTTCCAG 131855 29 96.6 32 ............................G TCATGGGGATCATCCCGGCGCGCCGGGCGCGG 131916 29 100.0 32 ............................. GACACGGGGCCTGCCCTGTTTGCTGACGGCTT 131977 29 100.0 32 ............................. TGGCTCGCCGACCCCACGAACTGGGTGCGCAT 132038 29 96.6 32 ....................A........ CCGGCGTAGGCGACGGACGGGGCCTTCCTCCG 132099 29 100.0 32 ............................. CACGCGAAGCCCCTCGGGCGTATCCCCCACGA 132160 29 100.0 33 ............................. CGTGGACACGGAGTCCGACCAGTGAAGCACGCG 132222 29 100.0 32 ............................. ATGGCTGCGGTCTGGATGCCCTGCCAGGCGGC 132283 29 100.0 32 ............................. GTCTGTGGATCCCACGCTTCGTTCTTGTTCTT 132344 29 100.0 32 ............................. CCTATGATCCTTGCCGAAGACCCCGTTGGGGG 132405 29 100.0 32 ............................. GCGACGCGGTCCGTGCCGAGCTCGAGCAGCAC 132466 29 100.0 32 ............................. GACCCGCGCATCCTCGAGGTGACCGTCGACCT 132527 29 93.1 32 .....................A..A.... GGGATCGGGTCGGACTGAACCTGGGCTCGAGG 132588 29 96.6 32 ............................G CGCGGCCCCACGACGCTATCGCCCAGAAACAG 132649 29 100.0 32 ............................. CGAGGACCCGTACGGCAGACGCACCAGCTCCG 132710 29 100.0 32 ............................. AGGACGCCGTCGGCGACGATGCCGGTGCCGGA 132771 29 100.0 32 ............................. GGGGCGCCGGAGAACATCCACGGGGGGTTCGC 132832 29 100.0 32 ............................. AGCGACGGCACGGTGGTCACGGCGGACGGCAT 132893 29 100.0 32 ............................. CAGTACTCCGAGTTGCGCGGGGCCATGAACCA 132954 29 82.8 42 ......................G..GAGG CGGTGGTCTCACGATGCGTCCGTCGATACGATCCGTCACACA 133025 29 96.6 32 .........................C... TGGGGAACCGCACCACCGCTGTCGCGGAAAAT 133086 29 72.4 0 ...C....T...T........T...GAGT | ========== ====== ====== ====== ============================= ========================================== ================== 34 29 98.1 32 GTGGTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : CGGCGTAGAGCAACCAGCTCGCGGGCGCTGAGTTTCGGCATCCTGTGCCTGCCGCGGCTACTCCGTACGGGCGCGCCCCAGTGTGCCGGCCACGCCGACCACCGCCACGGCCAAAGCCGCCCATGCCGCCCCTACATCAGCGCCTTCATGTCTGGTAAAGGCGGTCCGTATGCACAACACGGCCCTTCCCCAGGTCCCACACTACGATCTGCACCTTGAAGCGGACGGGCTTACGGAGGCTGCCGCAAGCGCAATAATCGGTGCGCGCAGCAACTTGACGTCAGGGTGTTCACCTCCATGCCTCAAGCCAACCCTAGGCGCCTGGCGCCGTTCGCCGACGCGACGAATGGATGCAAGGGATGTACGGTCCACATCTTCGCCACGACACATGCCCCACGCACTCTTTTCCAAGATCCAGTCAACCAGCCGACAGAATGTCCGTTTCTCCAGAAGCAACGTGTTTCCGCGCCCTGGCTGGGTGAATCCCCAGTTCACGGCCT # Right flank : TGCTTCTGTCACTTCTCGGGCCGTAGGTGGATGCAGTCTGTTGTGCTCCAGAAGCAGCTACGCACCCTTCCGCCTACAGAATCAACTGGGGCATCGCTCCTCCACCAACTCCCGCAAACAAGCCCGCACTTGATCTTGCGGTAGTGTCCACGTCTCCGGCTCCACAGGAGCTGGGGCGCACCAACGCAAACGGCCGACCCCGTGCACTCCCCTCGCAAGGAAACAGCACGGACCCGGCCTGTCCCGACCGCTCATCACGATCAAAGACAGGAGCAGTCTACCTGTGGGTACCAATGACACAGCACCTCCCGTACCAGAGCCGTCGCCGTTACCCCGCTGGCACGCTCTACTGCCGGCCGTCATTACCGCTTGTCCTGCCACCCCCTCCCCGAACGCACCCTGGGTGTGGGTGATCGTCGTGCTGATCGCGATCCTGTCGCTGCAGTCCAAGAAGTCGAAGCAGCGCTTCGCCTGACAGAACCGGTGCGGGAGCGCTCAGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 143570-144576 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAITYR010000012.1 Streptomyces griseocarneus strain CGMCC4.1088 Scaffold12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 143570 29 100.0 32 ............................. CTGCGCCCCACCATCACGAAATGGGCGGCCGG 143631 29 96.6 32 ............................A TATTGCCCGACGTGTCATAGAGCCGGAAACCG 143692 29 100.0 32 ............................. TACGTGACCGGCGTGAGCGGCTGGACGATCAA 143753 29 96.6 32 ............................T TCGCCGATCTCGTCATCAGGTCGTCCGACGGT 143814 29 100.0 32 ............................. TTGCCGGTAGCTGCTTGGCGTTGAGTCGATCG 143875 29 100.0 32 ............................. ACGACGGCCTCGAGGTGGCCGAGTGCCTCGTG 143936 29 100.0 32 ............................. TGATAGCGCTTCAGCCGCTCGATCGCATACCG 143997 29 100.0 32 ............................. TGGACAGGTACATGTAGGATGAACTTAAAAAA 144058 29 100.0 32 ............................. GCGTCGAGCCGATCGAGTTCGCCATGCACAGG 144119 29 100.0 32 ............................. TCCCAGGGCATGCTCTACCACCTGACCGGCTC 144180 29 100.0 32 ............................. GCTCGGGCGCTCCTACGCCGACGCACTCGGCT 144241 29 96.6 32 ...................C......... CCGATGGACGACACCACCACCGCACGGCGCGT 144302 29 96.6 32 .........A................... TGGGTCGCCCACCAGATGTAGACCCCGAGCGC 144363 29 100.0 34 ............................. TCCCCGCCGGCCGCACCGGCGGGGCCTGCGCCAT 144426 29 100.0 32 ............................. CCAAGAGGAGCTACCTGACCGGCCAGGACCGC 144487 29 100.0 32 ............................. AGCCGGAAGTCCTCATATCGGGTGACGGCGGC 144548 29 96.6 0 ....A........................ | ========== ====== ====== ====== ============================= ================================== ================== 17 29 99.0 32 GTGGTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : GGAGGAGCCCATCTGGTGACCGTCATCGTCCTCGCCAACTGCCCCGCAGGCCTGCGCGGATTCCTCACCCGCTGGCTCCTCGAAATCTCCCCCGGCGTCTTCCTCGGCTCTCCCACCACCCGCGTACGCGACATCCTCTGGGAAGAGGTCCGCCAGTACCGCGGCAAAGGCCGGGCCCTGCTCGCCTACCAGACCAACAACGAACAAGGCTTTGCCTTCGCCACCCATGAACACGCCTGGCACCCCACCGACCACGAAGGCCTCGTCCTCCTCCACCGCCCCTCCCCACAGGCACCCCCCACGGCTGGGAGCAAACCACCGAGCCCGCCGCGCCAAGGTTGGAGCAAGGCAGCGAAGCGACGGCGCTTCGGAAGTCGGTAGGAGGGCCACCCCATGCGCTCCCGGCTGGCGCCCAAGCATTCAACGGTCTCAATATGTCCGTTTCGCAAGAAGCGATCGAAATCCATTCCCTGCCCGCCTAAAAGCCCAGCTCACGGCTT # Right flank : CGCGATGTCCTCGTAGAAGCCGAGGGCCTCGGGGTGGTCTCCGGCGCCGTCTGCAGAGACAGCTCCCGTTCGGAAACCGCCCGGAAACCGTGCGGTGGGCGGCGGCCGGTGAGGCGCTGGATGGTGTCGGTCGAGCGGTCCTCCGCTCACACCGAGTTGACGAAGCTCTCGCCGCTCACGCGGCGGGCTGAGCGCAAAGATTCGCTTGGCGGCCGAGGGCGGCCTGCGGCCACTTGCCCTGCTGATCACGCCGCCGGGGCACTGGGGCGCCGCCCCGCGAATGGTCCCCGTCCTGCACCGGATCCGTGTGCCGCGCCCCCGGGCCATCCAAGTGGAGACACACGTCTTTCACGGCACGGTGACCCGCGCCGCGGTCCCGGCTCTGGCTCCGGCCGTGATCTGTCCGGCGATACCTGCCGTTGCACGGGGTGGCTGCCGCCCCGATGCCCGGACAGGGCACCCCACATGACGCCCCATATGATGGGCTGCAACCCGTCGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 54629-54173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAITYR010000013.1 Streptomyces griseocarneus strain CGMCC4.1088 Scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54628 29 100.0 32 ............................. AACGACGCCAAGTACGCGAGGGCGCGTGAGCA 54567 29 100.0 32 ............................. CCGTCGCGCGGGCGGGGAACTGGCTCGCCGAC 54506 29 86.2 32 ...................G......CTA GCACAGCAGACCATGACCGAGGACCTGTACGA 54445 29 93.1 32 ..........................C.A GTGCAGGTGGTGGCCCGTGTCGGGGCCCCACG 54384 29 96.6 32 ..........................C.. CCCTGACGCTCGGACTGCCAGCCCGAGTAAAT 54323 29 86.2 32 ...AG............A........C.. CGGCGGCGCCAGTTGTCGACGGCGGCCCGGCC 54262 29 82.8 32 ...AG...T....G............C.. GGCGAGATGGCTCAGGCGCTCCACGATTCGAA 54201 29 86.2 0 ...AA.....................CA. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 91.4 32 GTGCTCTCCGCGCAGGCGGAGGTGAGTCG # Left flank : CCGGCGCCGTCCTGAACGACCGGATCACCGAAGACGACTACCGCGAAATCTGGCGCCGCCGCGGCCAGATAATCTGACTCGCTGGAAACGATCTTCAGTCGGAGGGTGGGGCAACAGGTGGATGTGCTGCGCGAGGAATACCGCGAATCTACCAGCACCTTCAAACCCGCTTCACCACTGGGGATCTCGCCCCGGCGCCGGTGATACCTTCCGCACAGTTCGACTGAGCGCCCTCGGTCGTGCGATGAAAGTGATCACTCGTCTGTCCAGCACCGACCCGAAGGCCGCTGCTGGCCACACCCTTGCTCTGGCCCGGGCATGCAGCACCCTGCTCAAGTTCTACCCCGAGGCCCCGTGATTCCCTCGGAGCGGCGGGCGAGACCGTGGAGAATGCCGCCGTGTTCTGAACGGGTGATCGTCGTGTTCAATGGAGAAGTGTTCCGCTCCGAGCCTTGTGTCAAGAAACAGCAAAGGCATGACAACGTTGCAGGTCGCGAAGA # Right flank : CGAGCGCTGGAGCAGCGAATCGTTGTAGAGGCCGCGACCGTTCCCCCTGGGAGCCAGGGTCTAGCCAACCGAGCTGGGGGCTGCGGCCCTCCGTACGGTTTGGTATACCTCGCTGTGGTCGCCGGTGATGGTGGCGAGCATAGGCAGCAGCTCGGTGGCAAGTGAACGCCGCTCAGCCGAGTCGGTGACGCCCCTCCAGTGCTGCACTGCCCGATCTGCCGAGGCCCGGGTGATCTCGTGCGCGGCGCCCCACACCTGCATCTGCAGGCCGGTGGTGTGCAGGTACCAGCGGGCGGCCACTGCCGGCTGGTCCATCAGGTGAGCGATCCACCCGCGCAGCTCCCGAACTTGGACCGTGTAGGAGTGCGAGGCTCCGTACAAGGCGGTGAACTCCTCATCCAGCTTCTCTGCCTCGAGGTTCGCCGAGGCGAGGCGCTGCGCGTCGACGGGCGGCGCGAATGCGGCGGTGACCGCCGTGATGCGCTGCTGGTACTCCGCAG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.60,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //