Array 1 107518-107372 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMQ01000011.1 Cronobacter malonaticus strain cro795W2 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================== ================== 107517 29 96.6 30 ..........C.................. GTAATTAAAGCCAACGCAGCAATAAAATCC 107458 29 100.0 29 ............................. ACAGTCAAACCCAGCGCGGCGATAAACCT 107400 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ============================== ================== 3 29 97.7 30 GTAGGGCGGGTAAGCGAAGCGCACCCGCC # Left flank : CCTCGTGAATCACATTAACCATGCACAGGAAATTGACGACGCGTTTCGCGCGGGAATGACGAAGCTGCGCGCGGCAGGCGTTACGCTGCTGAACCAGAGTGTGCTGCTGAAAGGCGTGAACGATAACGCCGCGACGCTGGCGGCGCTCAGCAATGCGCTGTTTGATGCAGGCGTGATGCCGTATTACCTGCACGTGCTGGATAAAGTGCAGGGTGCGGCACATTTTATGGTGAGCGACGACGAGGCGCGGGCGATTATGCGTGAGCTGCTGTCGCAGGTTTCCGGTTATCTGGTGCCAAAGCTGGCGCGTGAAATTGGCGGCGAGCCGAGCAAAACGCCGCTGGATTTGCAGTTGCGGCAGAAGTGATTTATCGGGAATGACGAGGCGGCGGGTGCGCTTCGCTTACCCGCCCTACGCAGTAAATGCCAGCGATAAAATTTCCAGGCAAGGTAACCGAAACGCACTAGTCACAGTACAACCTAACGTAGCGTTAAAATCT # Right flank : TTTTTTATCTTTGAAAACGATTAACGCGTCGATATCACTTTCAGTTCGGGCACTTATACACCTGGCCGACCATTTTGCTGGATGTCGGAACAAAGCTTGAAAGCAGGTTCTGGGTCGGGCTGCTTACGCCATAAAGCACGTTGCCGCCCATCGCTGCCGCCTGATTACGCAGGTCGTTTGCCGCGCCGCGCATAGAGCCGCCCTCTTCGCCGTGCTGACCAGAAAGCCAGTTACTCTGCTCGCCGGTCGCAGTGCCCAGTAAGCGGCACTCTTTACCAGGTTGCTCTTCAACAAAACGCACGCTCTGACCTGCGGTCGAGAGTGAGTTACCGTTGCTGCATCCCGCCAGCAGCAGCGCTGCGACAACCATTCCTGTAGTGACTTTCAAGCGCATGTTGTTCCCCATTATGAATAACTGGTGATAGCCTGGGCTGCGTAAGCCCGGTAAGACCTTATACTAAAAAGATGACCAAAAGAAAAACCCCGGCCATTTCTGACCG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGGCGGGTAAGCGAAGCGCACCCGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 47295-48116 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMQ01000007.1 Cronobacter malonaticus strain cro795W2 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47295 29 100.0 32 ............................. ATATCGCCATTAATGGTGATGCCTCTATTAGC 47356 29 100.0 32 ............................. CGCGCTGTAACTGAACGTGCCGAGGTTAATTT 47417 29 100.0 32 ............................. CGCGCGCCAACTCCATGAGGGACATCCCGTTA 47478 29 100.0 32 ............................. ACGAGTCGTTCACAGGCGAGTTCATCAGCGTA 47539 29 100.0 32 ............................. TGTTTTCAGGTTTGTCATTCGTTGATCCTTTG 47600 29 96.6 32 ............A................ CCGCAGGTAACCAGCGGCGACTGGCAAAACTT 47661 29 96.6 32 ............A................ CGAGAGAATTTAAAACCCCCACCACCGACGCA 47722 29 100.0 32 ............................. TTCGTGTCGGTGCCGTTATCCGGGGTGAAAAC 47783 29 100.0 32 ............................. GCGTTGTCTTTTGAGTTGAGGACGCCGGGCAC 47844 29 100.0 32 ............................. AATTTTTGGGCGCTCGTGTGCCGCAGTAACCG 47905 29 100.0 32 ............................. GTGGTGACAGTTATTCCGAGTCCGTACCCGCC 47966 29 100.0 32 ............................. TGCGGCGGTCGAGAGGTTGGCGAACGCAGTGT 48027 29 89.7 32 .C.........AT................ AACACGTCGTCGTAGGCTTTTCCTGGCCACCA 48088 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGACCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATCCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATGAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTAGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAATGCTTAACGTTAGT # Right flank : GCGGCAGCGTCAATACAGACTTCTTTTGAGAGCCTGTTCTTCGCGCCTGTCAATCACCTCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGTGCGCTGTACGATGGCTTCAGTAAAGGGTTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGACTGGTGCTGGTGGACACCGGCTTTGGCTGTGACGATATGCGCCATCCGGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACCCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 74569-75268 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMQ01000007.1 Cronobacter malonaticus strain cro795W2 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74569 29 100.0 32 ............................. CAGGAACATATAGCCGGACGACCCTGCGAGGG 74630 29 96.6 32 ...........A................. CGCGCGCAATGGCTGCTTTTTAGCGTTTAGGA 74691 29 100.0 32 ............................. ACGTCGGGGTGCCAACGAAAGCCGGCGACTCA 74752 29 100.0 32 ............................. ACGTTTTTTTCGCTGAGCTCCTAGGTCATGAT 74813 29 100.0 32 ............................. AGCAGCCTCAGTCGCGCCAGCGGTGCGCCCGT 74874 29 96.6 32 ............................T CGACGCTGCAAACGCCGATCTATCAGCTATCG 74935 29 100.0 32 ............................. GGGCAGGACTCTTAATGCATTTTCTTTATCAC 74996 29 100.0 32 ............................. GCACGCCTGCTGCGTTACTGACGTACTCCTGA 75057 29 96.6 32 ............................A TAAGCAGGAGCCGCCAGCGGAGATGCAGGCGG 75118 29 100.0 32 ............................. TTGACCTGAGCGGTGAGCGTGGTAAACGTGCC 75179 29 100.0 32 ............................. AAAACGATACGAGCCAAAATCCTCGCCAGCAT 75240 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGGCTAGTTTCGTTTTTACCGCTTCAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGCTGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATCGCCAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGAGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //