Array 1 150403-150550 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGZ01000040.1 Klebsiella oxytoca strain EY52 EY52_BDMS190049432-1a_1.clean_(paired)_contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 150403 28 100.0 32 ............................ CATCATGGCATCCCAGGCGCCGCTGGCAGCAT 150463 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 150523 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCAGCAGCATGCTGGTGGCGAAAGGTCTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTACTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGGATTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTTTGGGGAGGGTATTTTAAGATCTTGATTTTTTTAATATTTTTATTGTTGTCACAAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACACTAAGGCAGGTGCGCCGGGCTAGT # Right flank : AGAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACGAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 163810-165159 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGZ01000040.1 Klebsiella oxytoca strain EY52 EY52_BDMS190049432-1a_1.clean_(paired)_contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 163810 28 100.0 32 ............................ AAAAACTGAGCGGCCGCAGAATGAAGTTGTAA 163870 28 100.0 32 ............................ TCATTTGGCGACGTGCCTTGTGCGCGCATTTC 163930 28 100.0 32 ............................ GTCAAAAGAATGATTTCCTGCACAGGGTTCAA 163990 28 100.0 32 ............................ AGGAGCGGGTCATATTCCACCGTCGCGGCTTT 164050 28 100.0 32 ............................ GGAAGACTGGCCTAATTATGAGGTGCGTTATC 164110 28 100.0 32 ............................ TGCAGCAGCGGGTAACGTTCCTGACGACGACC 164170 28 100.0 32 ............................ CAATACTCACCATTGATGAGCAACGATAAAAA 164230 28 100.0 32 ............................ GTAACCGCATGTCGGCTTTTGCTGCATGGTGG 164290 28 100.0 32 ............................ TTCGGCCATACCGCGATACGACGCTTAACCAG 164350 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 164411 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 164471 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 164531 28 100.0 32 ............................ GGCTGCGTCGGGACCCACCACATCGCCAGCAG 164591 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 164651 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 164711 28 100.0 32 ............................ TGCCGTGGCGGGGTTGGCTCCAGCCACAATCC 164771 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 164832 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 164892 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 164952 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 165012 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 165072 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 165132 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCATCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGTTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGATAAAGAGAAAAATGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACCGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAATGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGAAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGGAACGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCAGTTAGCCAGGCTGCAATGCGTGAGTTCGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCCGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 173588-174576 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGZ01000040.1 Klebsiella oxytoca strain EY52 EY52_BDMS190049432-1a_1.clean_(paired)_contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 173588 28 100.0 32 ............................ TTATCCACGGCTTCCAGCAACTCGGGGTTTTC 173648 28 100.0 32 ............................ AAATGGGCCGCCAACGAAAGCAAGAGCACCTC 173708 28 100.0 32 ............................ AATACTGGAAGGATATTAAGCGTGGCGGTATT 173768 28 100.0 32 ............................ ATATCCGCCGCGCCGGATAAGCCTTGCTGCCC 173828 28 100.0 32 ............................ ATCGTGTCTGGGAGAATGTCTTTGCTCATAAT 173888 28 100.0 32 ............................ TGAAATTGATAGAAGGTTCTGAGCAAACCTGC 173948 28 100.0 32 ............................ ACGATGTGAACGCTATCGCTATGCACACCACT 174008 28 100.0 32 ............................ TCGGTGCGCAGTCCAGATATTGCGATATACAC 174068 28 100.0 32 ............................ ATTAAAACCAATAGTCTGACGATCCAGCGCCA 174128 28 96.4 32 ..........C................. AGATAGCACCGCCTGGGCGCATATCTTTCGCC 174188 28 100.0 32 ............................ CGATGCCTCCGATAAGAGAAAAGGCGTTCTCT 174248 28 100.0 32 ............................ CTGGAAACATAGCAAATGGCACCGTGTTACAA 174308 28 100.0 32 ............................ TCAAAAAGTACGGACGGTGGACGGTGAGCGAA 174368 28 100.0 32 ............................ ATTCGCGTTAACTACGAAGACAGTAACGGTAA 174428 28 100.0 32 ............................ AGATAGCCACCGCCGAGTAAGACGATTGCCCC 174488 28 100.0 33 ............................ CTGACCGGTATCAATTACGCGCAAATCCATTTG 174549 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACACAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTGACGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTCAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTATATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTATAGTGGTTAGGCTTCA # Right flank : ATCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //