Array 1 53-943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXP010000101.1 Leptolyngbya cf. ectocarpi LEGE 11479 NODE_215_length_17675_cov_3.58913_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 53 35 100.0 37 ................................... CCTAGACTTAACCTAGATGACCATTAATTGTCATCTA 125 35 100.0 33 ................................... TAGAGCCGCTGATCAGAATCAGCCCACCCCATC 193 35 100.0 35 ................................... AGCAGCCAATACCAAACACTGCAGCGACTTGAAGC 263 35 100.0 38 ................................... AATTCCCGTCGCTTAACACCGTTATAGAGCAGCTTTGG 336 35 100.0 37 ................................... CAACAAGAAGAAGCTGAGCGCGCCCGTGAAGAGCAAC 408 35 97.1 39 ..............G.................... ATTGATAAAACTCTCACTTCTACATCAGTAGACTGAACC 482 35 100.0 37 ................................... CTAGCGCCAGTGCTACAATGCCGAGCAGTAAGTAGGT 554 35 100.0 37 ................................... CTAGCGCCAGTGCTACAATGCCGAGCAGTAAGTAGGT 626 35 100.0 35 ................................... ATGGAATATTGCCCCATTCGTACCTTTACTCACTA 696 35 100.0 35 ................................... AGACCGAAGTTGCGAGTTGCGTTTTTCATGATGTT 766 35 100.0 36 ................................... CCAGCTATCATCATTACCAAAAGAAAAGAGAGCAAA 837 35 91.4 37 .......T..T.........T.............. ACAACAAACTGGGCAGTTCGGTGAGAACCAAGCAGTT 909 35 97.1 0 .......T........................... | ========== ====== ====== ====== =================================== ======================================= ================== 13 35 98.9 36 GTTCAAAATCCATTACCCCGCGAGGGGACGGAAAC # Left flank : CCCCGCGAGGGGACGGAAACCCTTGTTATTACGGGTAAAACTACCCCAGATCG # Right flank : CAGAAGAGAAAGCAGAAATAGAAATGATGAACGATGAATTAAACTCGCCTTTAATTCCACTGACTAGAGTGAGATTAAACACGGATTACTTCATCATTCATAGTTCCTCGTTCATCATTCATCTCATACTGCCCTAACTCCTCCGCTGCCTCAGTCCGCATCCGCCGCCGCAGCTCTAAAGGCGCAATCACCTCCCCCTTAGGCCGCCAATCTCGCAACCGCATCACAATATTAATATCCCCCAAACGCACCCACGCCTGATAATAAGCATCCTGCGGATTTAACCGAGCCAAAATATCCAAAACTTCCACCTGTTCATTAGCGTCCCCTATCTCCTGCTTTACCAATTTTGGCAATGCCCCATAATCAATCGACTGGAAAGTAGAGTGCCGCTCAGTCTGATCCACATACCACCGCGCAAACTCAGACGGAAATCGCATAATCAACAACCGTCGGGGTAAGTAAAAATTAAACCCCCAGGCCTCATCCAAGGCAGCACT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAATCCATTACCCCGCGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 835-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXP010000573.1 Leptolyngbya cf. ectocarpi LEGE 11479 NODE_1085_length_2226_cov_4.63745_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 834 35 100.0 39 ................................... GATCTTCCTCATGCAGAGACAATACCTCTGCAGCAGAAG 760 35 100.0 36 ................................... AATCCGTAAAAGCGTTGCCATGCAGCTTGCCAGCTT 689 35 100.0 36 ................................... GTCGTAACAAGACTTCCGGGTTTGAACCTCGGAAAT 618 35 100.0 37 ................................... GAGTGATCAACATAATGTTGAAGACTCTTCTGCAAAG 546 35 97.1 35 ....................T.............. TTAATCGCTTCTATATGCGCTGCTGACATTTCCTC 476 35 100.0 40 ................................... CCAAAGAGGAAAGATTGTGATTCACGCTAATCTCATCTGT 401 35 100.0 37 ................................... TTATCTACGATTCAGTCGAAACTGAACTAACTTAAAG 329 35 100.0 33 ................................... GCAGGAACTGCGATAACAGCAGAACCCACAAGA 261 35 100.0 41 ................................... CATCAATGGTCTGGCTGTCGATCGGGCAATAGAATACCTTC 185 35 100.0 36 ................................... GTCGTAACAAGACTTCCGGGTTTGAACCTCGGAAAT 114 35 100.0 37 ................................... TCCACCTTTAGAAGTGCAAGCAGCGTAAAATCCAGAC 42 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 12 35 99.8 37 GTTCAAAATCCATTACCCCGCGAGGGGACGGAAAC # Left flank : TCCTAGCCGAGCGCATGGATGAACTAACAGAGATATTTCTCTCTACCAAAAAACGTCAGGGCGGACGTCGCGCCATCGACACCGCAGAAACCTGGGCCACCATCGTAGCCCGACGAGAACAGGGCGACTCATTGCAAGAAATTGCAGACGATATGGAGCTGGCCTATGAAACAACGAAGACCTACTCGAAGCTAGCACGGCGGGCAATGAGGGAGCTGGACTGAAAGGGTTAGGAAGATGGAATGCACCTGACAGGGGCTATGGACATTTATAAAAAGGCCAGTTAAGCTATGGCATAAGCTCCCATTTCTGAGGGGGTCTAAAGAACCTTGAAAACCGCATAGTTTCGTCGACCCCCTCGGATTGCTTGCAATGCAAGAGTTTCAGCCGTTTTAGACTATGCTTTAATGCCACTGATTCTCATTATTTTTAGTGATTTTGGACCCCCTCAGAAATGGGTGTCTGAAAAGCTTATTTGGCAAGGGTTCTAGAGGGTGGGG # Right flank : CCCTTCTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAATCCATTACCCCGCGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 5432-2855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXP010000260.1 Leptolyngbya cf. ectocarpi LEGE 11479 NODE_402_length_9223_cov_3.86137_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 5431 35 100.0 34 ................................... TGTTCACTACGAGCATAGATTACAAAATAGACGT 5362 35 100.0 35 ................................... AGGAGTGGGGTTAGTGCTGAGGTTCAGCAACAACG 5292 35 100.0 39 ................................... CTTAGTCCCGTCGATCCAGTTTGCACCTGCGATCGTGGC 5218 35 100.0 35 ................................... TTGAAGTGGGAAGTGTCCCAGTAAAACTCCCCTGC 5148 35 100.0 34 ................................... CTGCTCATAGCGATAGTGTCCGTTCCGGTTCCGA 5079 35 100.0 36 ................................... TTTTCTGGCAGGTTTTTGTGAACCCAGAGTGTACAA 5008 35 100.0 35 ................................... ATTCCAACCGGCATCTGCATCAGCTTGAGTGTAAT 4938 35 100.0 36 ................................... AAACACTCCGTCATCGTCCTCCACAGAACTTGCCGG 4867 35 100.0 38 ................................... CCTGTGCAATCGTTGCTCCCTTTACAAAAACACCAGTG 4794 35 100.0 37 ................................... ATGCGGAAAGTAACAATACCGCGTAGAAATCCTGACT 4722 35 100.0 36 ................................... CCTTTCCTCAATTGCTTCAGCCACGAAATTCCAGTG 4651 35 100.0 35 ................................... GTGCTGTACGCTGTGCCAAGGCCGTCTACTAAAGT 4581 35 100.0 36 ................................... TTCGGCTCGTTTTGCCTTTTTCCACTCTTCACACTC 4510 35 100.0 36 ................................... CCATCAGAGCTTTTTGCTGTAAGCGTAGAATTGTCA 4439 35 100.0 37 ................................... TTGAAGTAAGTTGCCCTTACGACACCTATAGTCAATA 4367 35 100.0 30 ................................... ATTCATCAGGTACCCATGCGCAGCGAACGC 4302 35 100.0 37 ................................... GTAATCAGGAACTTGAACATGCTGAATATTATCACCC 4230 35 100.0 36 ................................... AATCTTAGTACTGGTCAATCCATACTCCTTTTACAG 4159 35 100.0 36 ................................... CTGCTCAAGCAGCGCCATCGTCTTTTCTTCAACATC 4088 35 100.0 37 ................................... GTGCAAGCTTATAGATTCCTTGCGTTTCGTCATAATC 4016 35 100.0 37 ................................... CTACTTCACCTACTTCAGCTGGATCACTTTCAACCTG 3944 35 100.0 34 ................................... AGGTTGCCCGACGAAAAACCCAAAAAATACAAGC 3875 35 100.0 36 ................................... ATGGTTATAGAAGTTAGCCCATAAACGTGCATACAC 3804 35 100.0 33 ................................... GAGGAGCTGGAGCTGGAGGACGCGGAGGAGCTG 3736 35 100.0 39 ................................... CAGGGTTAGTGCCACGGAAATCAAACTCAGTAGATGACG 3662 35 100.0 36 ................................... CTTGAGACCGGTAATAATATCGACTTCACCGTCGGC 3591 35 100.0 36 ................................... AAACAGTTTAATGCCGTGCGTACACAAGGCGTGATT 3520 35 97.1 34 ........T.......................... CTTTGGCTGCGCCAGAGCCGCTGTCATACCCATG 3451 35 100.0 35 ................................... AAGATACAGGGCGTAGTTAATCCCTAAATCAAACT 3381 35 100.0 36 ................................... CTGACTAGCTTACGCTAGCTGGAGGACGGGATTACC 3310 35 100.0 34 ................................... CGGCTATAGTAGAACGTGGCATCTAAGCCTTCTC 3241 35 100.0 37 ................................... CTCCATCCTCGGGAGTAATCGTCTCTGCGTGTTCTTC 3169 35 100.0 37 ................................... ACCACGAACAACGAGACTGTTTAGACGCTTATCTCGA 3097 35 100.0 35 ................................... ACGGGTACGTGCGGGGTGACGCACGAAGAGCAACC 3027 35 94.3 32 ........T.A........................ TGCACTTATCAACACGTTGGCCACGTTTCCAC 2960 35 94.3 36 ........T.A........................ TTAACTTGAGTATCAGCTGAAAAGTTGTAATCAAAG 2889 35 91.4 0 ........T.A.......................T | ========== ====== ====== ====== =================================== ======================================= ================== 37 35 99.4 36 GTTCAAATCCCATTACCCCGAAAGGGGACGGAAAC # Left flank : AAAACCCCACAGCCTCATTAGGAAATCATAGCCAAGCATCCAGACTTAGGATAAGCTCGCAGTCTATGAGGAATTAAAATAGACAATGGCCTATACATTTTTTGATGTAAGGGACTGAAGTGGCCCATGTGGTATACAGCCTGAAAGCATCAGGTGCTCTGACAGGTGAGGTGGCACTCTTAAATTGCCGGGGCACAAGCGGTGTGGTGCGAGAGGTATTAGAGCATGTCATCAAAAAGTCTGAAGAAATGCTTTAAGCGCTGGACATGGTCTAAAAAGCAGGCTAAGTTTGGGGATAGCTCCTCATTTCGTGGGGGTCTGCCGGACCTTGAAAACTGCATTATTTCGTCAACCCTAGAGAATCAACTGGTATACAAAGGTTTCAGCCTTTTTCAAGGGTGCCTTATTGCAGCTGATTCTCAATTGTGGACCCCTTGCTTAGACCCCCGCGAAAATGGGGGTCTCAAGACCTTACTACGTATAGGTTTCAAAAGGTAGGG # Right flank : AAGAAGAGAGATTTTCTCATGAGAAAACCAATAGTTCTATCTATCACATATCGTTCAACATTTATCGTTTCAGGCTGAGGCAAACCAAGAGAGCAAAACGATATAATTTCCAAATATCCCTCCTCCATCACCCTGCTTCTTTCCGATGCTTCCTCCGTCTGATGTCATCATAAGCAAACTCCACCTGAACCTAAACTCCCCAACCCTAATCAAATCGCCTGCCGATCGCAGCCAGTACCGAGCCATACTAAACTGGATCCAGCGATATCACCCCCCTGAAGCAAGCACTAACCTCGAAAAAGTCACAGGACTCATTCAAGCCTTTCACCATGCTTGCGATGTAAACAACTGGTCCATGGCCCGTCAGCTTCTATCTTTGCGCCTAAATACACCAACCCAAGAAGAACTCGACAACCAACTACAAACCTGGGGATATTACAACGAACAAATCGAACTATACACTCCCCTCCTTGGAAAACTAAACGATGAGTGGGACGCCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCCCATTACCCCGAAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 6475-5414 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXP010000256.1 Leptolyngbya cf. ectocarpi LEGE 11479 NODE_397_length_9354_cov_3.55554_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 6474 35 100.0 39 ................................... CTCTGCAGGTTCAACATAGTCTGATAACGGCTGCTCGAA 6400 35 100.0 38 ................................... CTCATGATAAGAGCAATAGCTTGGCGAGCACTAGGTAC 6327 35 100.0 38 ................................... CGGTGTGCCTCAGCCAGCAGGTCTGTTGTCTTAGCGTT 6254 35 100.0 40 ................................... CCGCTGCTTTCCCTGCATTTAGCAGGCTTCTAGCCGTACC 6179 35 100.0 36 ................................... CTCAGCTGGGCTTCGGTAGACTTGACGGCGTTGCGT 6108 35 100.0 43 ................................... AAAATTGTTTTAGTGTCGTTAGGCGGAGAGCCAACCCGATACG 6030 35 100.0 43 ................................... TTTGAACTAGATTAGCAAACATAACAGCTTTCTTCATATAACA 5952 35 100.0 39 ................................... TCTGCAAAGTTATCAGGTTGGCCCATACGTTTCCTTGAG 5878 35 100.0 40 ................................... TTTTCAAAACTAACAGAGATACTATTTACTCCTTCTTTTT 5803 35 100.0 38 ................................... AATTGCGAATGTTTGAAATACAACAGTTACAAAATCAG 5730 35 97.1 37 .......G........................... TTAAACGTATCGAGTGTTGATGTCGCTCCATTGGAGT 5658 35 100.0 33 ................................... CTTGGCCTTGGAGTTATCGCTATATTTGTTTTG 5590 35 100.0 38 ................................... CAATAAAAGTACAGGGTCCATAATTAAAGTCTCTTACT 5517 35 100.0 34 ................................... ATAGTACCAGACGCAACCAAGGAGCCCACTTCGA 5448 35 97.1 0 ......................A............ | ========== ====== ====== ====== =================================== =========================================== ================== 15 35 99.6 38 GTTTCATACCTATTACCCCTCACGGGGACGGAAAC # Left flank : TCTGATGCTTGAGGTCGATGTTTGTCCCATCATGTTAGCCACACACCTGGCCTGGAGATGATTGTCTCTGGGCCTTTTTTGGGAATTGATTGAGTGGGTGAGCCTAATCGTTTATAAGATAGAAGATCAGGTGTTTAGCTTCGTCGAATAAGCCCCCAAACCCCCAATACTGGGGGCTTTGAATCTAGTTTCCCCCAATATTGGGGGACGGAAGGGGGCCTCGGGATCTGAAGCCTAATTGGGACAACCTACTTATCAGGCTAGACAATTGGGGATAGATGGGTTAGCTTGTGGGAGCTGGGTGTGGGTCTTCGCACCCCCCTGAGAACCTTGAAAACCTGATAGCTGCGTTTACCTGCGTCGATGCCTTGCTGTGATTGGCTTCTATCGTCTGACGTGGGGCTAAAATGCTCGGTTTTGACTTGAATTCTGTGGACAGAACCGGGGTGCGTCGATTTGACGGTCAGATTGCTTGTCTGGTAAGGGCTCCTGAGAGAGGG # Right flank : TCCATCAAAGCTACAATCGTTTGTCTCAATTACTGTTTCATACCTATTACCCCTTGTATGTTTAGAGACGTAGCAGTAGACTGCAATCCCCTAGGTCAATGTAGGTGATGCTCACGAAGACGAAGACTTTGGAGAAACAGCAGTCTGTAGGGTGGGCAACTGCTTAGACGTATCTTTTACAATTCGCCAAAATTGTAGTTGCCCACCGTTGTTAGCTCATCATTACGCTCGTTCTAATCCATCCGTACCCGCTTAATCAAAATCGCCATGGCCTCATTCGGTTGCCCCGTCGGTAACGGACGGCTCCAATCATTAGCCTCAGCGTAGTTGAGCTTGTGCAGGTGTTTGATGGTGGTCTGGATATAGCTCAAACTACCAAATAGCAGATGGCGTCCAGACTCGTAGGCGTGCTCGGGGAGCGACGCAGGCTGGTTTGACGACGCATTTGCGCCGGAAGTTGATTCTTGAAACATAGGTCTGGTTCTCCAATGAAACGAGAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATACCTATTACCCCTCACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 4813-5694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXP010000380.1 Leptolyngbya cf. ectocarpi LEGE 11479 NODE_546_length_6122_cov_3.56464_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 4813 35 100.0 33 ................................... ATTAACAGTAGCTACCGTTTCAGGATCAGCAGA 4881 35 100.0 34 ................................... ACTAGAAAGGGTGTTAGATTCTTTGATCCTAATA 4950 35 100.0 37 ................................... ACGATTGTCTTAGGGGCTAGATTTAGAGTTTGAGCGG 5022 35 100.0 36 ................................... AATCAAGCAAGAATCGTTTTTGCCCAAAATATAAGT 5093 35 100.0 34 ................................... GCTCATCAAGATACGTGATCTCGTATGACTCATG 5162 35 100.0 37 ................................... TCAGTCTCGCTTGCAGTCGGACGTGGAACAGGACGTT 5234 35 100.0 36 ................................... GTTCTGAAAAGCCGTCATGTTTGCCAACTGTGCAAC 5305 35 100.0 36 ................................... CGATGCTTCGTCTTTCGCCCGGTTGCATTCCGGTGA 5376 35 100.0 34 ................................... CCGTACACTTCTCGTCAACTTGTTCTTGAGTCAA 5445 35 100.0 35 ................................... AGTTATCCAGCTGAATCTCTGGTGCAGTAATACTC 5515 35 100.0 36 ................................... TATCGTCATAGGCAACGTTATCAACGAACACATCAA 5586 35 97.1 38 ...........................G....... GAACTGGAACCCAGCTACCATCTTTCGCTCGGGCAATT G [5614] 5660 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 13 35 99.8 36 GTTCAAATCCCATTACCCCGAAAGGGGACGGAAAC # Left flank : TAGGGACATGGGTTGAAATTCCACCTCTTAGTGAAAATAGCATCAAGCGTAATGTGTTAAGGGGTAAAATTAGACGCTGCGCTCTAATTTTCATCATTACTGGCTATATGAGTCATTCGTTGACCCATGCGGTATATAGCCTGAAGGCATCAGGTGCTCTGGCAGGTGAGGTGGTACTCTTAAATTGCCGAGGTACAAGCGGTGTGGTGCGAGAGGTATTGGATCATGTCATCAAAAAGTCTGAAGAAATGCTTTAAGCGCTGGACATGGTCTAAAAAGCAGGCTAAGTTTGGGGATAGCTCCTCATTTCGTGGGGGTCTGCCGGACCTTGAAAACTGCATTATTTCGTCAACCCTAGAGAATCAACTGGTATACAAAGGTTTCAGCCTTTTTCAAGGGTGCCTTATTGCAGCTGATTCTCAATTGTGGACCCCTTGCTTAGACCCCCGCGAAAATGGGGGTCTCAAGACCTTACTACGTATAGGTTTCAAAAGGTAGGG # Right flank : CGTAAGTAGGATTAACAAACTTACGCATTTGCTCATAGCGTTCAAATTCCATTACCCCGCGAACATACAAGGAAGTGGAAACTTCTAATAAGACGGAAAAGCCAAGATAGAAGATGGAGAAAGAGCCCCTATCCAAAACCATGCTTGCCAAATGATATTTGTACGTTTACCCTCCGTTCTCCGTCCTCTCTTTTCCACTCAGCTCACTCGCCAGCTCAGCCGCCTTACGACGATACTCAGCTGCCAATGCCTCTTCGCCCGTCTCTTGGTACAGAAACGCAAAATACCGATATATGGTCGCCTCGACTGGTCGAGCCTCTATCGCTTGAATAAGGATTAGAGCCTGATGAAGCACTTCCGTAGCCTTCGAAAACCGCTTTAGCTTAGTCAAGGTCCCCCCCAGGTTAGCCAGCGTTACCCCCTAAGCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCCCATTACCCCGAAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 1769-3647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXP010000415.1 Leptolyngbya cf. ectocarpi LEGE 11479 NODE_592_length_5524_cov_2.98851_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 1769 35 94.3 36 ..........T...........A............ TTCTGAAATTATGTTTTCTAAGACTTTTCCTGACAC 1840 35 100.0 42 ................................... TATATCTACACTCCTAAACTATTTGGTCTGAAGGCTTGGTAA 1917 35 100.0 39 ................................... CGGAATACTGGCCAGCGTCTAAGCGCGTCTCACCGTATT 1991 35 100.0 36 ................................... CCGGTTACAGCAGGTGGATCAGGCTCAGCTGTGATT 2062 35 100.0 37 ................................... GCTAGCATTTCAGCTACTTCTGTGTCGCCGTCTAAGG 2134 35 100.0 32 ................................... TTAATGGTTTATCTGTTGGGCTACCATCTTTG 2201 35 100.0 40 ................................... AGTGAAGATGTTATTTAGCATGATTTTGGTTTAGGTGAAG 2276 35 100.0 41 ................................... ACAATGGACGCTCTTCTACAAGGTCATAAAGCTCGTTCTCG 2352 35 100.0 41 ................................... AACCGGCTCCAGCGGTTGAACGTGGCTGTGATCTCATCGAA 2428 35 100.0 38 ................................... GCTTTCAATATTGATTGCTCTAGTCGATACGAGTACCA 2501 35 100.0 37 ................................... TGATAACTTAGCAGATTCGCTCTTAGGCAGCCACTCG 2573 35 100.0 35 ................................... TTTTTGTCGTATATCCGTTGAGCTACTCGCTTTTT 2643 35 97.1 40 ..................................T TGACTCTTGGTTGTTAGCGGGTGGGGGTTCTTATTAATTT 2718 35 100.0 42 ................................... TACAACTCCACTAAATGCAGCTTTCAAGTCATCATCGGTCAA 2795 35 100.0 38 ................................... TCGACTAGTCAAGCTCTAAACTGGTTTTCGTCTAAAGG 2868 35 97.1 37 .............C..................... TTAACCAAATATTAAATAGTCAAATACTTATTTTTAA 2940 35 100.0 43 ................................... AGTATTACTATTTGGTATCTTTCAGGGTTTTCATAGAGTTGTC 3018 35 100.0 44 ................................... GTAGCGCTCAATCCAACCAATTAACCCAGCTACATGCTGCCCTA 3097 35 100.0 35 ................................... ATTAAAACAATCGCCCGATATAGTGTTCTCGAATT 3167 35 100.0 39 ................................... TTAAACTAGATGAATGAGGCTCTGAGTAGTTAGCTTGAC 3241 35 100.0 38 ................................... AGACTCAATGCCAAATTGTGTGAGCTAACCGATGGTGA 3314 35 100.0 40 ................................... CCAAGCACATTCAGGCCAGAAAGCTATTTAGACTGCCTGA 3389 35 100.0 36 ................................... CAGACTCTTGAAGTAAAGACGGATCGATTGAATATA 3460 35 100.0 40 ................................... AGAAGTGAGACAACTATAGGAACGGCAACAGCGAAGAATG 3535 35 88.6 41 .C........TG..................A.... TCATCACCCAACAGCGTATAGAGTACATGTCAGCTAAGAGT 3611 35 82.9 0 A...A.....TG..............A.T...... | CC [3625] ========== ====== ====== ====== =================================== ============================================ ================== 26 35 98.5 39 GTTCCAAACCCATTACCCCTAACGGGGACGGAAAC # Left flank : ATTCCGGATCATAAGCGTCGCAAAAAGCTATCGGATTTTTTGGAAGGCTATGGGCGGCGGGTGCAGCGGAGTGCGTTTGAATGCTTTTTGAATCTGGGTGAGATGAAGAAACTGTATGAGCAGCTGACTAAACGTGTGGTGCCTGCTGAGGATAATGTGCGGCTGTATTGGATTAATGCGGATGCAATGCCGCGTACGTTGACGTTGGGGAGTCGGCCACCGCAGCCGCCACCGGATGCTTATGTTTTGTAGCGGGCCTTGATTTGTGAGATTGGAGAGGCTATCGTAAGTTCAGTGATTTTATGGAGTCGATGCACTTCAGGAGAACCTTGAAAACTGCATAATTGCATGGAGGTCCGTCGATGGCCTATGGGGCCAGGGTTTCAGACGATAACTATTGGTTTTACTGATAGGTCAAAGTATGGTTTGATACACTTGGCTGTGGGGTGCGTCGATTGAGGGCCTGTAAGCTATGTTTCATAAGTGTTTCCAGGCAAAGG # Right flank : CTTCAAATGCTCAATCAACATCACACATCTTTCTCCTGAGCCATTTTAAGAATCAAAGCATAGAGCGCAGGAGAGACTCGAAAGGTGGCATCAGCCATCAGGATATCCATCACTGGCTTTACCGCTGCAATCAGCCCATTAGTCTTAGCATCCACCAAAATACCCAGTAATCCAGTAATTCGGATTCCTAACCGCTGAGCCTCTGCACGGCCCCGACGTTCATCAATCGGCATTGAGCGCCTGAACTATCACTGACAACGATCACAGGCGGTTTAGCTCCCGTAAGTTTTTCAGATCTACCTCAAAATCTTCTACGTCATATACATAAAGCGGCACTTGACGAGATTTGAGAAACTCCTGAAAAGCAGGCTTCTCCATCTCCGCCATTTGGGCCGCATAACCTAGGGTCAACCGCCCTGACTGAAACAGATGCAAAGCAATTTCCTGCAAAAATTCCGCCTGGCTTAGTTCAGAGGCTCTGATAATTTCATCTGAAATCA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAAACCCATTACCCCTAACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //