Array 1 139-1427 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXG01000036.1 Pseudomonas aeruginosa strain ENV-551 PA4_D3_NODE_23_length_86633_cov_25.4114_ID_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 139 28 100.0 32 ............................ GCGCACCCTGGGCACTTGTCCTCATCCGGTTC 199 28 100.0 32 ............................ AGGTGGTTGGATAGGTTCATGTCGGCCAGCAT 259 28 100.0 32 ............................ TCCGGCGGATCATGGCCGAGCGCAAGCTTCGC 319 28 100.0 32 ............................ TCGAAATGATGGTTCCCTACGAGGACCTGCAG 379 28 100.0 32 ............................ CCTTTGTGCCGTGCCATGACCATGACCAGGCC 439 28 100.0 32 ............................ AGCAGAACAAGGAGCATTCGATAAGCCACACG 499 28 100.0 32 ............................ GGGCAGATTCACGTCGTGTGCCCCTTCACATG 559 28 100.0 33 ............................ CTCAAGCTGGGTCTGCCCAACCGTGGCGGAATA 620 28 100.0 32 ............................ TTTCGCGCTGCCTGCTCAGCACGGAGCATGTC 680 28 100.0 32 ............................ TCGTTGACCCGCTGGCGCCAGAGCATTTCGCG 740 28 100.0 32 ............................ TGGAGCAGGTCAGCACCGCGCTGGCCGCGCAA 800 28 100.0 32 ............................ ATGATCGGATTGCCCTTCTCGTCGCGCTCGAT 860 28 100.0 32 ............................ ATCTCAAAATCGTCGCAGCCAGTTAGCAAACT 920 28 100.0 32 ............................ AAGCACTCTGGTATGCGCTGGTTGCAAAGTAC 980 28 100.0 32 ............................ ATGTCTCACCTCGCGTTCGCGTGCATGCGGCT 1040 28 100.0 32 ............................ GTCTACGGATTCGCCGGATTCGTGCCTGAGTG 1100 28 100.0 32 ............................ ATCGCCGTCAGAGCCGCCACCGCTGCCGCCAG 1160 28 100.0 32 ............................ ATTATGCGAGGCCACTTTTGGTACCGGCAGAG 1220 28 100.0 32 ............................ TATCCCTCCCTCTTTTGGCATGTGTCAAAACA 1280 28 100.0 32 ............................ CTCCCCAGCGCAGGCCGAGCAGGCAGAGGCGG 1340 28 100.0 32 ............................ AAGCAGCGCGAAGCGTTTTTGAAGCACCTGGG 1400 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCAGACAGGAAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAACAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGTGAATGCCGCCATAGACGGTATCCGCCGGTCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGGTGCCGGGCCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCACTAAGCAACAGCGCCCCCCCTCACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 139-1248 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXG01000025.1 Pseudomonas aeruginosa strain ENV-551 PA4_D3_NODE_37_length_48882_cov_23.522_ID_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 139 28 100.0 32 ............................ TTGGCGCGGATCCAGTCCGCCTCGTTGTCGAA 199 28 100.0 32 ............................ TACAGCATCAGCGAAACCGTCTGTGAGGATTG 259 28 100.0 32 ............................ AACGACGAGGCGCGTCCCTACGGCGCCATAGT 319 28 100.0 32 ............................ AAGATCATGGTGCGGCGCGCTGCTTTTTTTCC 379 28 100.0 32 ............................ AACTCGTGCTTGATCGCCTTCTGCCTGGCCTC 439 28 100.0 32 ............................ GGCACGCGAACGCCTGGTGGCCTTGAGTAGGT 499 28 100.0 32 ............................ ACCGGATAGTTCGCGCCGTTCTGTGCGTTCGC 559 28 100.0 32 ............................ TTGGTGGCCTCCGCTGTCTGCCTCATGAAGCC 619 28 100.0 32 ............................ TCGATCTCGCGCAGTTCCTTGCGGATGTGGTC 679 28 100.0 33 ............................ TGTTCTGGGGTTAGGCTGCCGGCGATCATTTCT 740 28 100.0 32 ............................ AGCACGGCATCAACTTCAGCCTGGCGATCATT 800 28 100.0 32 ............................ TTGCCGAACGGGTTGTTCTTCACGAACGCGCA 860 28 100.0 32 ............................ TGGGAGGGATGCCACTGTGACCGTCGCCCTAC 920 28 100.0 33 ............................ TGGTCGAGCCGACCGATGTAGCGCGCATCTGTT 981 28 100.0 32 ............................ ATCAGCACCCGGCGGCATGGCCCGCGCCGTGC 1041 28 100.0 32 ............................ ACACCAGCAGGGCGACGGTCACAGCGGCATCC 1101 28 100.0 32 ............................ CACCGCCCCGCCTCTACTTACAAACCGCCTTA 1161 28 100.0 32 ............................ TTTTCCGTAGCCTGCCCGGACATTGCCCTGGC 1221 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : AACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACGTCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCCCGCCCATCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10460-9773 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXG01000025.1 Pseudomonas aeruginosa strain ENV-551 PA4_D3_NODE_37_length_48882_cov_23.522_ID_73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10459 28 100.0 32 ............................ ACCTGGCAGACGTTCGTTCACCTCTGGCGTAG 10399 28 100.0 32 ............................ ACCGGGCCGACGACACCACGCCGTTAGGAGAC 10339 28 100.0 32 ............................ TCGGCGTCACGCTTGAAGATGCCCCAGTTCTT 10279 28 100.0 32 ............................ ATCGGAAAAGCAGGAACCAGCGGTACGCTGCC 10219 28 100.0 32 ............................ AGACACCGCCGGCGGTGCCGAGGCCGACCAGT 10159 28 100.0 32 ............................ TCTAGGGCGCCACGGAAGCCCACATAACCCAG 10099 28 100.0 32 ............................ GGATGCAGCCTCGACCTGCTTGGCGGCCCCCT 10039 28 100.0 32 ............................ TTGGTGGCGTCGGCGTCGATGTGCAGGCCCGG 9979 28 100.0 32 ............................ ATGCCGAGTACGTCGAGCAGCGGAGACGCATG 9919 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 9859 27 89.3 32 A....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 9800 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGGTGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //