Array 1 47179-45597 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHS01000023.1 Acinetobacter baumannii AB_2009-04-01-7 AB_2009-04-01-7_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47178 28 100.0 32 ............................ TTCTACTCCTCGAAGCTCGTCGGCGGCGTCCT 47118 28 100.0 32 ............................ TAACGTGGTGTGAGCCGAGAACCTGCAAGCCA 47058 28 100.0 32 ............................ TTTTGATGAGCAGGTATTTACACAATATAAAT 46998 28 100.0 32 ............................ TGATCAAGAATGATATGTACTAGCTCACTATC 46938 28 100.0 32 ............................ TTCGAGTCATAATTATAGTAAAAAGTCATCTT 46878 28 100.0 32 ............................ TACATAAAAATGCGGACCCAACGATAAGGATT 46818 28 100.0 32 ............................ ATTAATCGAGGAAAAAAAACATGAATGTTAAT 46758 28 100.0 32 ............................ ATCACTTAACCCATCATCAATAAGTTGGCCTT 46698 28 100.0 32 ............................ AGTCACCATTGTTCGAAGCTGTTGGGTCATTA 46638 28 100.0 32 ............................ TTGTTGCATCATTTGCGACTCATGACTATTTG 46578 28 100.0 32 ............................ AAATACAAAGTTAGGTATTGGTACTGGTGAAA 46518 28 100.0 32 ............................ AATATCCACCAATGATTTTGGTAAAGATAGAG 46458 28 100.0 32 ............................ AGACACATACGTAATGGTGTCAATATCGTATA 46398 28 100.0 32 ............................ TGCCCCAGCGAGCAAACGCCTTAAAAATCCTG 46338 28 100.0 32 ............................ GAGATTTTTGTGCGCTTATAGAACATGAGCTT 46278 28 100.0 32 ............................ GTAGGGATAGTGAGATTGTAGACCTTACAATG 46218 28 100.0 32 ............................ CCGCAGATTTACGGATGCCTGTAACTGTCATG 46158 28 96.4 32 ...A........................ TATCATGAACATTGTTCCTTGACCCACGGGCA 46098 28 92.9 32 ...A.....T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 46038 28 100.0 32 ............................ TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 45978 28 82.1 27 ....C......TCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 45923 28 92.9 32 ....C....T.................. AAACAACGAGCCTTGTCGCGGGTCGCCCATGT 45863 28 96.4 32 ...A........................ CAAATCAAAAGTGCAGTTGCTGCCTCAATAAC 45803 28 96.4 32 ...A........................ TCTTCATCTGTTACATATGAAGCAAGGATCTT 45743 28 92.9 32 ...A.......T................ GTCAAACGACAGGGCTATAAACACTTAATCTT 45683 28 96.4 31 ...A........................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 45624 27 78.6 0 A..T........TC........C.-... | A [45620] ========== ====== ====== ====== ============================ ================================ ================== 27 28 97.2 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCCTCATTTAATAAAGTTCGAGCACTAAGATAGGGTAAATCAAGTGCTTGCTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAGTTAATCGTCTTTAAACTAAAGTGTACTGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : TTTCTCTTTCGAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTGTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTAGGAGCAAAGCATAAATTTGCAAACGATGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTACTAATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATCGGTAAGGCCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52269-55358 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHS01000023.1 Acinetobacter baumannii AB_2009-04-01-7 AB_2009-04-01-7_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52269 29 100.0 31 ............................. ACAGGTTTTGCTTCTAAAACCCGAATTAATG 52329 29 96.6 31 ............................A TAAAAATCTTGAAACTTCCCTCTCTGATTAC 52389 29 100.0 31 ............................. ACAGCCCGAATCCAGGCTAGAACCTCATTTT 52449 29 100.0 31 ............................. CTATGGAAAGCCTGGATGAAGCATGTACTTA 52509 29 100.0 31 ............................. AAAAGTTCTAAAACAGTAGTATTCGCGTTAG 52569 29 96.6 31 ............................A GTCTTTGCCAAGTATGTTAAAGACCCAGCAC 52629 29 96.6 31 ............................C TATTTATTTAAAAACATTAAACGATTTAATT 52689 29 96.6 31 ............................A ACTGTAGTGGGTCATAAGGAGATTTAGTTAG 52749 29 96.6 31 ............................C AACATATGGAATTGCAGCAACCGATGCATAA 52809 29 100.0 31 ............................. AGTTCATCAAATGAAACTAACGCTTCCCATT 52869 29 96.6 31 ............................A CTCAGGCAATTGTTGGGAAAAGTCGATTTCT 52929 29 100.0 31 ............................. GTTTCAAGGTCTCGGATAATTCCACATTCAT 52989 29 96.6 31 ............................A TATACATCGTTATTGCATTCTGCATATCCCA 53049 29 96.6 31 ............................A TTAAGAGAGGCTTGTTTAGATCAATACTTGC 53109 29 96.6 31 ............................A TAACAGGTCAAGTTACTGTTGACCCGGTAAA 53169 29 96.6 31 ............................A TAACCAAAATGAGAATAAAAAATTCTTTAAA 53229 29 100.0 31 ............................. TCACCTGTAGTAACAGTTGTTAGATAACCCA 53289 29 100.0 31 ............................. CTGGAGTCATGGGGGCTAATTTATTTAAACG 53349 29 100.0 31 ............................. TATCCCTCGATCTGCTGTAACGTGGTGTGAG 53409 29 96.6 31 ............................C CAAGGTGTGCGCACCAAAGCAAAACCAATCT 53469 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 53529 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 53589 29 100.0 31 ............................. TGTAAAACCTCTGGATTAAGCATTGCGTTCA 53649 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 53709 29 93.1 31 ......T.....................A AAATGACCATCAATCGACAGTGGTTTACCTT 53769 29 96.6 31 ............................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 53829 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 53889 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 53949 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 54009 29 100.0 31 ............................. CTCCCCCCTCCTCGATCGGCTGTGAAAGTAC 54069 29 100.0 31 ............................. TTAAATCGTCATATTAAGGCGCAGTTCCGAA 54129 29 96.6 32 ............................A AAGATCTGACCAGCTAAAACATTCTGGTTATC 54190 29 100.0 31 ............................. AGAAGCAGAAAATATCCAACTCATTGCTACT 54250 29 96.6 31 ............................A CATGGGAGCTTTCATTCATATATGTCATTAG 54310 29 96.6 31 ............................A CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 54370 29 100.0 31 ............................. GTTTTGCTAATTTATCAATATCGATTTTCAC 54430 29 89.7 31 ...AC.......................G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 54490 29 93.1 31 ....C.......G................ TAAATGCTCAACTACTTCTGTAGCTAATGGA 54550 29 89.7 31 ...GC........C............... CTCAACTCATTGATTTTTTCTTCTCTTGCCA 54610 29 89.7 31 ...GC.......................A TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 54670 29 89.7 31 ...GC......T................. TCAAATGATTTAATGAGCTTGTAGCCATTTT 54730 29 82.8 31 A..GC.......T...............A CGTCTTCTAATGATGGACTTTAATCCAATAT 54790 29 79.3 31 A..GA.......TC..............A TCTCACTGAAGATATGACCATCACTTTCTTC 54850 29 79.3 31 ..CGC.......CC......C........ TTATAACCACCAGTTAAAGTATTGACTAAAA 54910 29 72.4 31 ...GC.G...A..C.AT...........A CAATCGGGGACGTGGTCAAAAAGATTATCAG 54970 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 55030 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 55090 29 89.7 31 ....G........C..............A TTAAAGCATTTTCATATGAGCCTTCCTCATT 55150 29 86.2 31 ....A......TCC............... TCGGATCAGTCCAGTCATCATTCTCGTCAAT 55210 29 89.7 31 T..G........G................ ATTATTGCGCGACAGAACGTATCAATTAATG 55270 29 89.7 30 ...GC.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 55329 29 86.2 0 .G..C...................AT... | G [55333] ========== ====== ====== ====== ============================= ================================ ================== 52 29 94.4 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACCCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTCGACCTCGCTGATCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGATATATGTAGTAAAATCAAATAAAATCATATATTTAATCTAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGGATGGCGTCAATTGAACAAATATAATAATATACTGATTTATCTTAATTAATTTTTATAAAAAAATCCCAGTGTACATGACAGTGTACAAATTATATGTTGCTGGCCTATTTCCTTCGGGTTTGGTTGCTATATACGGAGTACAACTCATGTATTAAACACCTTACTGGCAATCCAGTAACACTACCCTACTCCACCACTTACACAGCATCACTTCGACATCTCGTCAACGCAATTTTGCGTTCGGCATTGTTTTCAAAAGTTTATCCAGAATTAGACGCACCTAAAACCCGATAAAACCCTATCAACTCTTATCATTAGCTCTTAATAAAACGTAGTCTTTTATCCAGGTAGCTACTACGAATTTCTCGTAGTAAGGCACTGTATTTGAAACATGGAAATGAGATTCCTTAAATTAGCGATAAACCTTGTTGTATATAGC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.40, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-56] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //